PMC:3062687 / 1823-2044 JSONTXT

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    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1146","span":{"begin":85,"end":90},"obj":"P23396"},{"id":"T1147","span":{"begin":157,"end":161},"obj":"P23396"},{"id":"T1148","span":{"begin":203,"end":206},"obj":"P21579"},{"id":"T1149","span":{"begin":203,"end":206},"obj":"Q04206"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    pmc-enju-pas

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1314","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T1315","span":{"begin":3,"end":13},"obj":"JJ"},{"id":"T1316","span":{"begin":13,"end":14},"obj":","},{"id":"T1317","span":{"begin":15,"end":20},"obj":"NNP"},{"id":"T1318","span":{"begin":20,"end":21},"obj":"."},{"id":"T1319","span":{"begin":22,"end":31},"obj":"NNP"},{"id":"T1320","span":{"begin":31,"end":32},"obj":":"},{"id":"T1321","span":{"begin":32,"end":34},"obj":"NNP"},{"id":"T1322","span":{"begin":35,"end":39},"obj":"NN"},{"id":"T1323","span":{"begin":40,"end":43},"obj":"NNP"},{"id":"T1324","span":{"begin":44,"end":53},"obj":"NN"},{"id":"T1325","span":{"begin":54,"end":60},"obj":"NN"},{"id":"T1326","span":{"begin":61,"end":62},"obj":"-LRB-"},{"id":"T1327","span":{"begin":62,"end":66},"obj":"CD"},{"id":"T1328","span":{"begin":66,"end":67},"obj":"-RRB-"},{"id":"T1329","span":{"begin":68,"end":76},"obj":"NN"},{"id":"T1330","span":{"begin":77,"end":84},"obj":"NN"},{"id":"T1331","span":{"begin":85,"end":90},"obj":"NNP"},{"id":"T1332","span":{"begin":91,"end":102},"obj":"RB"},{"id":"T1333","span":{"begin":103,"end":109},"obj":"NNS"},{"id":"T1334","span":{"begin":110,"end":115},"obj":"JJ"},{"id":"T1335","span":{"begin":116,"end":122},"obj":"NN"},{"id":"T1336","span":{"begin":123,"end":127},"obj":"NN"},{"id":"T1337","span":{"begin":128,"end":141},"obj":"NN"},{"id":"T1338","span":{"begin":142,"end":144},"obj":"IN"},{"id":"T1339","span":{"begin":145,"end":156},"obj":"VBG"},{"id":"T1340","span":{"begin":157,"end":161},"obj":"JJ"},{"id":"T1341","span":{"begin":162,"end":169},"obj":"JJ"},{"id":"T1342","span":{"begin":170,"end":183},"obj":"NN"},{"id":"T1343","span":{"begin":183,"end":184},"obj":","},{"id":"T1344","span":{"begin":185,"end":192},"obj":"IN"},{"id":"T1345","span":{"begin":193,"end":202},"obj":"VBG"},{"id":"T1346","span":{"begin":203,"end":206},"obj":"CD"},{"id":"T1347","span":{"begin":207,"end":220},"obj":"CD"},{"id":"T1348","span":{"begin":220,"end":221},"obj":"."}],"relations":[{"id":"R1116","pred":"prep","subj":"T1314","obj":"T1317"},{"id":"R1117","pred":"amod","subj":"T1315","obj":"T1314"},{"id":"R1118","pred":"punct","subj":"T1316","obj":"T1317"},{"id":"R1119","pred":"ROOT","subj":"T1317","obj":"T1317"},{"id":"R1120","pred":"punct","subj":"T1318","obj":"T1317"},{"id":"R1121","pred":"ROOT","subj":"T1319","obj":"T1319"},{"id":"R1122","pred":"punct","subj":"T1320","obj":"T1319"},{"id":"R1123","pred":"compound","subj":"T1321","obj":"T1325"},{"id":"R1124","pred":"compound","subj":"T1322","obj":"T1325"},{"id":"R1125","pred":"compound","subj":"T1323","obj":"T1325"},{"id":"R1126","pred":"compound","subj":"T1324","obj":"T1325"},{"id":"R1127","pred":"ROOT","subj":"T1325","obj":"T1325"},{"id":"R1128","pred":"punct","subj":"T1326","obj":"T1325"},{"id":"R1129","pred":"appos","subj":"T1327","obj":"T1325"},{"id":"R1130","pred":"punct","subj":"T1328","obj":"T1325"},{"id":"R1131","pred":"compound","subj":"T1329","obj":"T1330"},{"id":"R1132","pred":"compound","subj":"T1330","obj":"T1333"},{"id":"R1133","pred":"nsubj","subj":"T1331","obj":"T1333"},{"id":"R1134","pred":"advmod","subj":"T1332","obj":"T1333"},{"id":"R1135","pred":"ROOT","subj":"T1333","obj":"T1333"},{"id":"R1136","pred":"compound","subj":"T1334","obj":"T1337"},{"id":"R1137","pred":"compound","subj":"T1335","obj":"T1336"},{"id":"R1138","pred":"compound","subj":"T1336","obj":"T1337"},{"id":"R1139","pred":"dobj","subj":"T1337","obj":"T1333"},{"id":"R1140","pred":"prep","subj":"T1338","obj":"T1333"},{"id":"R1141","pred":"pcomp","subj":"T1339","obj":"T1338"},{"id":"R1142","pred":"amod","subj":"T1340","obj":"T1342"},{"id":"R1143","pred":"amod","subj":"T1341","obj":"T1342"},{"id":"R1144","pred":"dobj","subj":"T1342","obj":"T1339"},{"id":"R1145","pred":"punct","subj":"T1343","obj":"T1333"},{"id":"R1146","pred":"prep","subj":"T1344","obj":"T1333"},{"id":"R1147","pred":"pcomp","subj":"T1345","obj":"T1344"},{"id":"R1148","pred":"nummod","subj":"T1346","obj":"T1347"},{"id":"R1149","pred":"dobj","subj":"T1347","obj":"T1345"},{"id":"R1150","pred":"punct","subj":"T1348","obj":"T1333"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1585","span":{"begin":128,"end":141},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T1590","span":{"begin":44,"end":53},"obj":"http://purl.obolibrary.org/obo/GO_0046903"},{"id":"T1591","span":{"begin":128,"end":156},"obj":"http://purl.obolibrary.org/obo/GO_0031555"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    sentences

    {"project":"sentences","denotations":[{"id":"T785","span":{"begin":0,"end":221},"obj":"Sentence"},{"id":"T14","span":{"begin":0,"end":221},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T1847","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T1848","span":{"begin":145,"end":156},"obj":"Negative_regulation"},{"id":"T1849","span":{"begin":157,"end":161},"obj":"Protein"},{"id":"T1850","span":{"begin":162,"end":169},"obj":"Entity"},{"id":"T1851","span":{"begin":170,"end":183},"obj":"Localization"},{"id":"T1852","span":{"begin":193,"end":202},"obj":"Regulation"},{"id":"T1853","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T1854","span":{"begin":207,"end":219},"obj":"Localization"}],"relations":[{"id":"R1475","pred":"causeOf","subj":"T1847","obj":"T1852"},{"id":"R1476","pred":"causeOf","subj":"T1847","obj":"T1848"},{"id":"R1478","pred":"themeOf","subj":"T1849","obj":"T1851"},{"id":"R1480","pred":"locationOf","subj":"T1850","obj":"T1851"},{"id":"R1481","pred":"themeOf","subj":"T1851","obj":"T1848"},{"id":"R1482","pred":"themeOf","subj":"T1853","obj":"T1854"},{"id":"R1483","pred":"themeOf","subj":"T1854","obj":"T1852"}],"attributes":[{"id":"M31","pred":"Negation","subj":"T1852","obj":"true"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T1635","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T1636","span":{"begin":110,"end":115},"obj":"Protein"},{"id":"T1637","span":{"begin":157,"end":161},"obj":"Protein"},{"id":"T1638","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T1639","span":{"begin":207,"end":220},"obj":"Protein"},{"id":"T1640","span":{"begin":44,"end":53},"obj":"Localization"},{"id":"T1641","span":{"begin":128,"end":141},"obj":"Transcription"},{"id":"T1642","span":{"begin":162,"end":169},"obj":"Entity"},{"id":"T1643","span":{"begin":170,"end":183},"obj":"Localization"},{"id":"T1644","span":{"begin":145,"end":156},"obj":"Negative_regulation"}],"relations":[{"id":"R1377","pred":"themeOf","subj":"T1635","obj":"T1640"},{"id":"R1378","pred":"themeOf","subj":"T1636","obj":"T1641"},{"id":"R1379","pred":"themeOf","subj":"T1637","obj":"T1643"},{"id":"R1382","pred":"locationOf","subj":"T1642","obj":"T1643"},{"id":"R1383","pred":"themeOf","subj":"T1643","obj":"T1644"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T742","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T743","span":{"begin":145,"end":156},"obj":"Negative_regulation"},{"id":"T744","span":{"begin":157,"end":161},"obj":"Protein"},{"id":"T745","span":{"begin":162,"end":169},"obj":"Entity"},{"id":"T746","span":{"begin":170,"end":183},"obj":"Localization"},{"id":"T747","span":{"begin":193,"end":202},"obj":"Regulation"},{"id":"T748","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T749","span":{"begin":207,"end":219},"obj":"Localization"}],"relations":[{"id":"R597","pred":"causeOf","subj":"T742","obj":"T747"},{"id":"R598","pred":"causeOf","subj":"T742","obj":"T743"},{"id":"R599","pred":"themeOf","subj":"T744","obj":"T746"},{"id":"R600","pred":"locationOf","subj":"T745","obj":"T746"},{"id":"R601","pred":"themeOf","subj":"T746","obj":"T743"},{"id":"R602","pred":"themeOf","subj":"T748","obj":"T749"},{"id":"R603","pred":"themeOf","subj":"T749","obj":"T747"}],"attributes":[{"id":"M17","pred":"Negation","subj":"T747","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}

    test2

    {"project":"test2","denotations":[{"id":"T689","span":{"begin":85,"end":90},"obj":"Protein"},{"id":"T690","span":{"begin":145,"end":156},"obj":"Negative_regulation"},{"id":"T691","span":{"begin":157,"end":161},"obj":"Protein"},{"id":"T692","span":{"begin":162,"end":169},"obj":"Entity"},{"id":"T693","span":{"begin":170,"end":183},"obj":"Localization"},{"id":"T694","span":{"begin":193,"end":202},"obj":"Regulation"},{"id":"T695","span":{"begin":203,"end":206},"obj":"Protein"},{"id":"T696","span":{"begin":207,"end":220},"obj":"Localization"}],"relations":[{"id":"R564","pred":"causeOf","subj":"T689","obj":"T690"},{"id":"R565","pred":"causeOf","subj":"T689","obj":"T694"},{"id":"R566","pred":"themeOf","subj":"T691","obj":"T693"},{"id":"R567","pred":"locationOf","subj":"T692","obj":"T693"},{"id":"R568","pred":"themeOf","subj":"T693","obj":"T690"},{"id":"R569","pred":"themeOf","subj":"T695","obj":"T696"},{"id":"R570","pred":"themeOf","subj":"T696","obj":"T694"}],"text":"In particular, the E. coli O157:H7 type III secretion system (T3SS) effector protein NleH1 selectively blocks NF-κB target gene transcription by attenuating RPS3 nuclear translocation, without affecting p65 localization9."}