PMC:3062687 / 17794-17970 JSONTXT

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    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T12423","span":{"begin":19,"end":24},"obj":"P23396"},{"id":"T12424","span":{"begin":34,"end":38},"obj":"P23396"},{"id":"T12425","span":{"begin":97,"end":101},"obj":"P23396"},{"id":"T12426","span":{"begin":150,"end":153},"obj":"P10145"},{"id":"T12427","span":{"begin":155,"end":161},"obj":"P25963"},{"id":"T12428","span":{"begin":167,"end":174},"obj":"P21580"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T12272","span":{"begin":0,"end":3},"obj":"PRP-DOLLAR-"},{"id":"T12273","span":{"begin":4,"end":13},"obj":"NN"},{"id":"T12274","span":{"begin":14,"end":18},"obj":"IN"},{"id":"T12275","span":{"begin":19,"end":24},"obj":"NN"},{"id":"T12276","span":{"begin":25,"end":33},"obj":"VB"},{"id":"T12277","span":{"begin":34,"end":38},"obj":"NN"},{"id":"T12278","span":{"begin":39,"end":43},"obj":"NN"},{"id":"T12279","span":{"begin":44,"end":59},"obj":"NN"},{"id":"T12280","span":{"begin":60,"end":69},"obj":"VB"},{"id":"T12281","span":{"begin":70,"end":74},"obj":"IN"},{"id":"T12282","span":{"begin":75,"end":77},"obj":"PRP"},{"id":"T12283","span":{"begin":78,"end":84},"obj":"MD"},{"id":"T12284","span":{"begin":85,"end":89},"obj":"RB"},{"id":"T12285","span":{"begin":90,"end":96},"obj":"VB"},{"id":"T12286","span":{"begin":97,"end":111},"obj":"JJ"},{"id":"T12287","span":{"begin":112,"end":117},"obj":"NN"},{"id":"T12288","span":{"begin":118,"end":124},"obj":"NN"},{"id":"T12289","span":{"begin":125,"end":129},"obj":"NN"},{"id":"T12290","span":{"begin":130,"end":143},"obj":"NN"},{"id":"T12291","span":{"begin":144,"end":145},"obj":"-LRB-"},{"id":"T12292","span":{"begin":145,"end":149},"obj":"FW"},{"id":"T12293","span":{"begin":150,"end":153},"obj":"NN"},{"id":"T12294","span":{"begin":153,"end":154},"obj":"-COMMA-"},{"id":"T12295","span":{"begin":155,"end":161},"obj":"NN"},{"id":"T12296","span":{"begin":161,"end":162},"obj":"-COMMA-"},{"id":"T12297","span":{"begin":163,"end":166},"obj":"CC"},{"id":"T12298","span":{"begin":167,"end":174},"obj":"NN"},{"id":"T12299","span":{"begin":174,"end":175},"obj":"-RRB-"}],"relations":[{"id":"R9900","pred":"arg1Of","subj":"T12273","obj":"T12272"},{"id":"R9901","pred":"arg1Of","subj":"T12273","obj":"T12280"},{"id":"R9902","pred":"arg1Of","subj":"T12275","obj":"T12276"},{"id":"R9903","pred":"arg2Of","subj":"T12276","obj":"T12273"},{"id":"R9904","pred":"arg1Of","subj":"T12276","obj":"T12274"},{"id":"R9905","pred":"arg2Of","subj":"T12279","obj":"T12276"},{"id":"R9906","pred":"arg1Of","subj":"T12279","obj":"T12277"},{"id":"R9907","pred":"arg1Of","subj":"T12279","obj":"T12278"},{"id":"R9908","pred":"arg1Of","subj":"T12282","obj":"T12283"},{"id":"R9909","pred":"arg1Of","subj":"T12282","obj":"T12285"},{"id":"R9910","pred":"arg2Of","subj":"T12285","obj":"T12280"},{"id":"R9911","pred":"arg1Of","subj":"T12285","obj":"T12281"},{"id":"R9912","pred":"arg2Of","subj":"T12285","obj":"T12283"},{"id":"R9913","pred":"arg1Of","subj":"T12285","obj":"T12284"},{"id":"R9914","pred":"arg2Of","subj":"T12290","obj":"T12285"},{"id":"R9915","pred":"arg1Of","subj":"T12290","obj":"T12286"},{"id":"R9916","pred":"arg1Of","subj":"T12290","obj":"T12287"},{"id":"R9917","pred":"arg1Of","subj":"T12290","obj":"T12288"},{"id":"R9918","pred":"arg1Of","subj":"T12290","obj":"T12289"},{"id":"R9919","pred":"arg1Of","subj":"T12290","obj":"T12291"},{"id":"R9920","pred":"arg1Of","subj":"T12293","obj":"T12294"},{"id":"R9921","pred":"arg1Of","subj":"T12294","obj":"T12297"},{"id":"R9922","pred":"arg2Of","subj":"T12295","obj":"T12294"},{"id":"R9923","pred":"arg2Of","subj":"T12297","obj":"T12291"},{"id":"R9924","pred":"arg1Of","subj":"T12297","obj":"T12292"},{"id":"R9925","pred":"arg1Of","subj":"T12297","obj":"T12296"},{"id":"R9926","pred":"arg2Of","subj":"T12298","obj":"T12297"},{"id":"R9927","pred":"arg3Of","subj":"T12299","obj":"T12291"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T12768","span":{"begin":0,"end":3},"obj":"PRP$"},{"id":"T12769","span":{"begin":4,"end":13},"obj":"NN"},{"id":"T12770","span":{"begin":14,"end":18},"obj":"IN"},{"id":"T12771","span":{"begin":19,"end":24},"obj":"NNP"},{"id":"T12772","span":{"begin":25,"end":33},"obj":"VBZ"},{"id":"T12773","span":{"begin":34,"end":38},"obj":"NNP"},{"id":"T12774","span":{"begin":39,"end":43},"obj":"NNP"},{"id":"T12775","span":{"begin":44,"end":59},"obj":"NN"},{"id":"T12776","span":{"begin":60,"end":69},"obj":"VBD"},{"id":"T12777","span":{"begin":70,"end":74},"obj":"IN"},{"id":"T12778","span":{"begin":75,"end":77},"obj":"PRP"},{"id":"T12779","span":{"begin":78,"end":84},"obj":"MD"},{"id":"T12780","span":{"begin":85,"end":89},"obj":"RB"},{"id":"T12781","span":{"begin":90,"end":96},"obj":"NNS"},{"id":"T12782","span":{"begin":97,"end":111},"obj":"JJ"},{"id":"T12783","span":{"begin":112,"end":117},"obj":"NN"},{"id":"T12784","span":{"begin":118,"end":124},"obj":"NN"},{"id":"T12785","span":{"begin":125,"end":129},"obj":"NN"},{"id":"T12786","span":{"begin":130,"end":143},"obj":"NN"},{"id":"T12787","span":{"begin":144,"end":145},"obj":"-LRB-"},{"id":"T12788","span":{"begin":145,"end":149},"obj":"FW"},{"id":"T12789","span":{"begin":150,"end":153},"obj":"FW"},{"id":"T12790","span":{"begin":153,"end":154},"obj":","},{"id":"T12791","span":{"begin":155,"end":161},"obj":"NNP"},{"id":"T12792","span":{"begin":161,"end":162},"obj":","},{"id":"T12793","span":{"begin":163,"end":166},"obj":"CC"},{"id":"T12794","span":{"begin":167,"end":174},"obj":"CD"},{"id":"T12795","span":{"begin":174,"end":175},"obj":"-RRB-"},{"id":"T12796","span":{"begin":175,"end":176},"obj":"."}],"relations":[{"id":"R10345","pred":"poss","subj":"T12768","obj":"T12769"},{"id":"R10346","pred":"nsubj","subj":"T12769","obj":"T12776"},{"id":"R10347","pred":"mark","subj":"T12770","obj":"T12772"},{"id":"R10348","pred":"nsubj","subj":"T12771","obj":"T12772"},{"id":"R10349","pred":"acl","subj":"T12772","obj":"T12769"},{"id":"R10350","pred":"compound","subj":"T12773","obj":"T12775"},{"id":"R10351","pred":"compound","subj":"T12774","obj":"T12775"},{"id":"R10352","pred":"nsubj","subj":"T12775","obj":"T12776"},{"id":"R10353","pred":"ROOT","subj":"T12776","obj":"T12776"},{"id":"R10354","pred":"mark","subj":"T12777","obj":"T12781"},{"id":"R10355","pred":"nsubj","subj":"T12778","obj":"T12781"},{"id":"R10356","pred":"aux","subj":"T12779","obj":"T12781"},{"id":"R10357","pred":"advmod","subj":"T12780","obj":"T12781"},{"id":"R10358","pred":"ccomp","subj":"T12781","obj":"T12776"},{"id":"R10359","pred":"nmod","subj":"T12782","obj":"T12786"},{"id":"R10360","pred":"compound","subj":"T12783","obj":"T12786"},{"id":"R10361","pred":"compound","subj":"T12784","obj":"T12786"},{"id":"R10362","pred":"compound","subj":"T12785","obj":"T12786"},{"id":"R10363","pred":"dobj","subj":"T12786","obj":"T12781"},{"id":"R10364","pred":"punct","subj":"T12787","obj":"T12789"},{"id":"R10365","pred":"nmod","subj":"T12788","obj":"T12789"},{"id":"R10366","pred":"nmod","subj":"T12789","obj":"T12791"},{"id":"R10367","pred":"punct","subj":"T12790","obj":"T12791"},{"id":"R10368","pred":"conj","subj":"T12791","obj":"T12781"},{"id":"R10369","pred":"punct","subj":"T12792","obj":"T12791"},{"id":"R10370","pred":"cc","subj":"T12793","obj":"T12791"},{"id":"R10371","pred":"conj","subj":"T12794","obj":"T12791"},{"id":"R10372","pred":"punct","subj":"T12795","obj":"T12791"},{"id":"R10373","pred":"punct","subj":"T12796","obj":"T12776"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T13019","span":{"begin":44,"end":59},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T13026","span":{"begin":130,"end":143},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T11951","span":{"begin":0,"end":176},"obj":"Sentence"},{"id":"T123","span":{"begin":0,"end":176},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T13544","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T13545","span":{"begin":25,"end":33},"obj":"Negative_regulation"},{"id":"T13546","span":{"begin":34,"end":38},"obj":"Protein"},{"id":"T13547","span":{"begin":39,"end":43},"obj":"Entity"},{"id":"T13548","span":{"begin":44,"end":59},"obj":"Phosphorylation"},{"id":"T13549","span":{"begin":97,"end":101},"obj":"Protein"},{"id":"T13550","span":{"begin":150,"end":153},"obj":"Protein"},{"id":"T13551","span":{"begin":155,"end":161},"obj":"Protein"},{"id":"T13552","span":{"begin":167,"end":174},"obj":"Protein"}],"relations":[{"id":"R10886","pred":"causeOf","subj":"T13544","obj":"T13545"},{"id":"R10887","pred":"themeOf","subj":"T13547","obj":"T13548"},{"id":"R10888","pred":"partOf","subj":"T13547","obj":"T13546"},{"id":"R10889","pred":"themeOf","subj":"T13548","obj":"T13545"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T13120","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T13121","span":{"begin":34,"end":43},"obj":"Protein"},{"id":"T13122","span":{"begin":97,"end":101},"obj":"Protein"},{"id":"T13123","span":{"begin":112,"end":117},"obj":"Protein"},{"id":"T13124","span":{"begin":150,"end":153},"obj":"Protein"},{"id":"T13125","span":{"begin":155,"end":161},"obj":"Protein"},{"id":"T13126","span":{"begin":167,"end":174},"obj":"Protein"},{"id":"T13127","span":{"begin":44,"end":59},"obj":"Phosphorylation"},{"id":"T13128","span":{"begin":130,"end":143},"obj":"Transcription"},{"id":"T13129","span":{"begin":130,"end":143},"obj":"Transcription"},{"id":"T13130","span":{"begin":130,"end":143},"obj":"Transcription"},{"id":"T13131","span":{"begin":130,"end":143},"obj":"Transcription"},{"id":"T13132","span":{"begin":25,"end":33},"obj":"Negative_regulation"},{"id":"T13133","span":{"begin":90,"end":96},"obj":"Negative_regulation"},{"id":"T13134","span":{"begin":90,"end":96},"obj":"Negative_regulation"},{"id":"T13135","span":{"begin":90,"end":96},"obj":"Negative_regulation"},{"id":"T13136","span":{"begin":90,"end":96},"obj":"Negative_regulation"},{"id":"T13137","span":{"begin":102,"end":111},"obj":"Positive_regulation"},{"id":"T13138","span":{"begin":102,"end":111},"obj":"Positive_regulation"},{"id":"T13139","span":{"begin":102,"end":111},"obj":"Positive_regulation"},{"id":"T13140","span":{"begin":102,"end":111},"obj":"Positive_regulation"}],"relations":[{"id":"R10589","pred":"causeOf","subj":"T13120","obj":"T13132"},{"id":"R10590","pred":"themeOf","subj":"T13121","obj":"T13127"},{"id":"R10591","pred":"causeOf","subj":"T13122","obj":"T13137"},{"id":"R10592","pred":"causeOf","subj":"T13122","obj":"T13138"},{"id":"R10593","pred":"causeOf","subj":"T13122","obj":"T13139"},{"id":"R10594","pred":"causeOf","subj":"T13122","obj":"T13140"},{"id":"R10595","pred":"themeOf","subj":"T13123","obj":"T13128"},{"id":"R10596","pred":"themeOf","subj":"T13124","obj":"T13129"},{"id":"R10597","pred":"themeOf","subj":"T13125","obj":"T13130"},{"id":"R10598","pred":"themeOf","subj":"T13126","obj":"T13131"},{"id":"R10599","pred":"themeOf","subj":"T13127","obj":"T13132"},{"id":"R10600","pred":"themeOf","subj":"T13128","obj":"T13133"},{"id":"R10601","pred":"themeOf","subj":"T13128","obj":"T13137"},{"id":"R10602","pred":"themeOf","subj":"T13129","obj":"T13134"},{"id":"R10603","pred":"themeOf","subj":"T13129","obj":"T13138"},{"id":"R10604","pred":"themeOf","subj":"T13130","obj":"T13135"},{"id":"R10605","pred":"themeOf","subj":"T13130","obj":"T13139"},{"id":"R10606","pred":"themeOf","subj":"T13131","obj":"T13136"},{"id":"R10607","pred":"themeOf","subj":"T13131","obj":"T13140"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T11916","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T11917","span":{"begin":25,"end":33},"obj":"Negative_regulation"},{"id":"T11918","span":{"begin":34,"end":38},"obj":"Protein"},{"id":"T11919","span":{"begin":39,"end":43},"obj":"Entity"},{"id":"T11920","span":{"begin":44,"end":59},"obj":"Phosphorylation"},{"id":"T11921","span":{"begin":97,"end":101},"obj":"Protein"},{"id":"T11922","span":{"begin":150,"end":153},"obj":"Protein"},{"id":"T11923","span":{"begin":155,"end":161},"obj":"Protein"},{"id":"T11924","span":{"begin":167,"end":174},"obj":"Protein"}],"relations":[{"id":"R9573","pred":"causeOf","subj":"T11916","obj":"T11917"},{"id":"R9574","pred":"themeOf","subj":"T11919","obj":"T11920"},{"id":"R9575","pred":"partOf","subj":"T11919","obj":"T11918"},{"id":"R9576","pred":"themeOf","subj":"T11920","obj":"T11917"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}

    test2

    {"project":"test2","denotations":[{"id":"T11805","span":{"begin":19,"end":24},"obj":"Protein"},{"id":"T11806","span":{"begin":25,"end":33},"obj":"Negative_regulation"},{"id":"T11807","span":{"begin":34,"end":38},"obj":"Protein"},{"id":"T11808","span":{"begin":39,"end":43},"obj":"Entity"},{"id":"T11809","span":{"begin":44,"end":59},"obj":"Phosphorylation"},{"id":"T11810","span":{"begin":97,"end":101},"obj":"Protein"},{"id":"T11811","span":{"begin":150,"end":153},"obj":"Protein"},{"id":"T11812","span":{"begin":155,"end":161},"obj":"Protein"},{"id":"T11813","span":{"begin":167,"end":174},"obj":"Protein"}],"relations":[{"id":"R9490","pred":"causeOf","subj":"T11805","obj":"T11806"},{"id":"R9491","pred":"partOf","subj":"T11808","obj":"T11807"},{"id":"R9492","pred":"themeOf","subj":"T11808","obj":"T11809"},{"id":"R9493","pred":"themeOf","subj":"T11809","obj":"T11806"},{"id":"R9494","pred":"themeOf","subj":"T11811","obj":"T11813"},{"id":"R9495","pred":"themeOf","subj":"T11812","obj":"T11813"}],"text":"Our discovery that NleH1 inhibits RPS3 S209 phosphorylation suggested that it should also blocks RPS3-dependent NF-κB target gene transcription (e.g. IL8, NFKBIA, and TNFAIP3)."}