PMC:3062687 / 16794-17038 JSONTXT

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    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T12404","span":{"begin":16,"end":21},"obj":"P23396"},{"id":"T12405","span":{"begin":31,"end":35},"obj":"P23396"},{"id":"T12406","span":{"begin":134,"end":139},"obj":"P23396"},{"id":"T12407","span":{"begin":141,"end":147},"obj":"P23396"},{"id":"T12408","span":{"begin":209,"end":214},"obj":"P23396"},{"id":"T12409","span":{"begin":237,"end":242},"obj":"Q7DB71"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    pmc-enju-pas

    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determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T12597","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T12598","span":{"begin":3,"end":12},"obj":"VB"},{"id":"T12599","span":{"begin":13,"end":15},"obj":"IN"},{"id":"T12600","span":{"begin":16,"end":21},"obj":"JJ"},{"id":"T12601","span":{"begin":22,"end":30},"obj":"NNS"},{"id":"T12602","span":{"begin":31,"end":35},"obj":"JJ"},{"id":"T12603","span":{"begin":36,"end":51},"obj":"NN"},{"id":"T12604","span":{"begin":51,"end":52},"obj":","},{"id":"T12605","span":{"begin":53,"end":55},"obj":"PRP"},{"id":"T12606","span":{"begin":56,"end":64},"obj":"VBD"},{"id":"T12607","span":{"begin":65,"end":69},"obj":"NNP"},{"id":"T12608","span":{"begin":70,"end":75},"obj":"NNS"},{"id":"T12609","span":{"begin":76,"end":80},"obj":"IN"},{"id":"T12610","span":{"begin":81,"end":83},"obj":"NNP"},{"id":"T12611","span":{"begin":84,"end":88},"obj":"NNS"},{"id":"T12612","span":{"begin":89,"end":93},"obj":"NNP"},{"id":"T12613","span":{"begin":93,"end":94},"obj":":"},{"id":"T12614","span":{"begin":94,"end":96},"obj":"NNP"},{"id":"T12615","span":{"begin":97,"end":104},"obj":"NNS"},{"id":"T12616","span":{"begin":105,"end":115},"obj":"VBG"},{"id":"T12617","span":{"begin":116,"end":118},"obj":"CC"},{"id":"T12618","span":{"begin":119,"end":126},"obj":"VBG"},{"id":"T12619","span":{"begin":127,"end":133},"obj":"CC"},{"id":"T12620","span":{"begin":134,"end":139},"obj":"NNP"},{"id":"T12621","span":{"begin":140,"end":141},"obj":"-LRB-"},{"id":"T12622","span":{"begin":141,"end":147},"obj":"NNP"},{"id":"T12623","span":{"begin":147,"end":148},"obj":"-RRB-"},{"id":"T12624","span":{"begin":149,"end":151},"obj":"CC"},{"id":"T12625","span":{"begin":152,"end":156},"obj":"IN"},{"id":"T12626","span":{"begin":157,"end":158},"obj":"DT"},{"id":"T12627","span":{"begin":159,"end":165},"obj":"NN"},{"id":"T12628","span":{"begin":166,"end":173},"obj":"VBG"},{"id":"T12629","span":{"begin":174,"end":175},"obj":"DT"},{"id":"T12630","span":{"begin":176,"end":186},"obj":"JJ"},{"id":"T12631","span":{"begin":187,"end":191},"obj":"CD"},{"id":"T12632","span":{"begin":192,"end":198},"obj":"JJ"},{"id":"T12633","span":{"begin":199,"end":201},"obj":"TO"},{"id":"T12634","span":{"begin":202,"end":208},"obj":"VB"},{"id":"T12635","span":{"begin":209,"end":214},"obj":"NNP"},{"id":"T12636","span":{"begin":215,"end":219},"obj":"IN"},{"id":"T12637","span":{"begin":220,"end":229},"obj":"JJ"},{"id":"T12638","span":{"begin":230,"end":235},"obj":"NNS"},{"id":"T12639","span":{"begin":236,"end":237},"obj":"-LRB-"},{"id":"T12640","span":{"begin":237,"end":242},"obj":"NNP"},{"id":"T12641","span":{"begin":242,"end":243},"obj":"-RRB-"},{"id":"T12642","span":{"begin":243,"end":244},"obj":"."}],"relations":[{"id":"R10174","pred":"aux","subj":"T12597","obj":"T12598"},{"id":"R10175","pred":"advcl","subj":"T12598","obj":"T12606"},{"id":"R10176","pred":"mark","subj":"T12599","obj":"T12601"},{"id":"R10177","pred":"nsubj","subj":"T12600","obj":"T12601"},{"id":"R10178","pred":"advcl","subj":"T12601","obj":"T12606"},{"id":"R10179","pred":"compound","subj":"T12602","obj":"T12603"},{"id":"R10180","pred":"dobj","subj":"T12603","obj":"T12601"},{"id":"R10181","pred":"punct","subj":"T12604","obj":"T12606"},{"id":"R10182","pred":"nsubj","subj":"T12605","obj":"T12606"},{"id":"R10183","pred":"ROOT","subj":"T12606","obj":"T12606"},{"id":"R10184","pred":"compound","subj":"T12607","obj":"T12608"},{"id":"R10185","pred":"dobj","subj":"T12608","obj":"T12606"},{"id":"R10186","pred":"prep","subj":"T12609","obj":"T12606"},{"id":"R10187","pred":"compound","subj":"T12610","obj":"T12612"},{"id":"R10188","pred":"compound","subj":"T12611","obj":"T12612"},{"id":"R10189","pred":"pobj","subj":"T12612","obj":"T12609"},{"id":"R10190","pred":"punct","subj":"T12613","obj":"T12612"},{"id":"R10191","pred":"compound","subj":"T12614","obj":"T12615"},{"id":"R10192","pred":"appos","subj":"T12615","obj":"T12612"},{"id":"R10193","pred":"acl","subj":"T12616","obj":"T12615"},{"id":"R10194","pred":"cc","subj":"T12617","obj":"T12616"},{"id":"R10195","pred":"conj","subj":"T12618","obj":"T12616"},{"id":"R10196","pred":"preconj","subj":"T12619","obj":"T12620"},{"id":"R10197","pred":"dobj","subj":"T12620","obj":"T12618"},{"id":"R10198","pred":"punct","subj":"T12621","obj":"T12622"},{"id":"R10199","pred":"appos","subj":"T12622","obj":"T12620"},{"id":"R10200","pred":"punct","subj":"T12623","obj":"T12622"},{"id":"R10201","pred":"cc","subj":"T12624","obj":"T12620"},{"id":"R10202","pred":"conj","subj":"T12625","obj":"T12620"},{"id":"R10203","pred":"det","subj":"T12626","obj":"T12627"},{"id":"R10204","pred":"pobj","subj":"T12627","obj":"T12625"},{"id":"R10205","pred":"acl","subj":"T12628","obj":"T12627"},{"id":"R10206","pred":"det","subj":"T12629","obj":"T12630"},{"id":"R10207","pred":"dobj","subj":"T12630","obj":"T12628"},{"id":"R10208","pred":"nummod","subj":"T12631","obj":"T12632"},{"id":"R10209","pred":"amod","subj":"T12632","obj":"T12630"},{"id":"R10210","pred":"aux","subj":"T12633","obj":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determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T13013","span":{"begin":36,"end":51},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T13029","span":{"begin":70,"end":75},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T13030","span":{"begin":230,"end":235},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T11945","span":{"begin":0,"end":244},"obj":"Sentence"},{"id":"T117","span":{"begin":0,"end":244},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T13498","span":{"begin":16,"end":21},"obj":"Protein"},{"id":"T13499","span":{"begin":22,"end":30},"obj":"Negative_regulation"},{"id":"T13500","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T13501","span":{"begin":36,"end":51},"obj":"Phosphorylation"},{"id":"T13502","span":{"begin":119,"end":126},"obj":"Negative_regulation"},{"id":"T13503","span":{"begin":134,"end":139},"obj":"Protein"},{"id":"T13504","span":{"begin":141,"end":147},"obj":"Protein"},{"id":"T13505","span":{"begin":209,"end":214},"obj":"Protein"},{"id":"T13506","span":{"begin":237,"end":242},"obj":"Protein"}],"relations":[{"id":"R10850","pred":"causeOf","subj":"T13498","obj":"T13499"},{"id":"R10851","pred":"themeOf","subj":"T13500","obj":"T13501"},{"id":"R10852","pred":"themeOf","subj":"T13501","obj":"T13499"},{"id":"R10853","pred":"themeOf","subj":"T13503","obj":"T13502"}],"attributes":[{"id":"M460","pred":"Speculation","subj":"T13499","obj":"true"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T13080","span":{"begin":16,"end":21},"obj":"Protein"},{"id":"T13081","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T13082","span":{"begin":134,"end":139},"obj":"Protein"},{"id":"T13083","span":{"begin":141,"end":147},"obj":"Protein"},{"id":"T13084","span":{"begin":209,"end":214},"obj":"Protein"},{"id":"T13085","span":{"begin":36,"end":51},"obj":"Phosphorylation"},{"id":"T13086","span":{"begin":119,"end":126},"obj":"Negative_regulation"},{"id":"T13087","span":{"begin":119,"end":126},"obj":"Negative_regulation"},{"id":"T13088","span":{"begin":22,"end":30},"obj":"Negative_regulation"}],"relations":[{"id":"R10564","pred":"causeOf","subj":"T13080","obj":"T13088"},{"id":"R10565","pred":"themeOf","subj":"T13081","obj":"T13085"},{"id":"R10566","pred":"themeOf","subj":"T13082","obj":"T13086"},{"id":"R10567","pred":"themeOf","subj":"T13083","obj":"T13087"},{"id":"R10568","pred":"themeOf","subj":"T13085","obj":"T13088"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T11870","span":{"begin":16,"end":21},"obj":"Protein"},{"id":"T11871","span":{"begin":22,"end":30},"obj":"Negative_regulation"},{"id":"T11872","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T11873","span":{"begin":36,"end":51},"obj":"Phosphorylation"},{"id":"T11874","span":{"begin":119,"end":126},"obj":"Negative_regulation"},{"id":"T11875","span":{"begin":134,"end":139},"obj":"Protein"},{"id":"T11876","span":{"begin":141,"end":147},"obj":"Protein"},{"id":"T11877","span":{"begin":209,"end":214},"obj":"Protein"},{"id":"T11878","span":{"begin":237,"end":242},"obj":"Protein"}],"relations":[{"id":"R9537","pred":"causeOf","subj":"T11870","obj":"T11871"},{"id":"R9538","pred":"themeOf","subj":"T11872","obj":"T11873"},{"id":"R9539","pred":"themeOf","subj":"T11873","obj":"T11871"},{"id":"R9540","pred":"themeOf","subj":"T11875","obj":"T11874"}],"attributes":[{"id":"M448","pred":"Speculation","subj":"T11871","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}

    test2

    {"project":"test2","denotations":[{"id":"T11761","span":{"begin":16,"end":21},"obj":"Protein"},{"id":"T11762","span":{"begin":22,"end":30},"obj":"Negative_regulation"},{"id":"T11763","span":{"begin":31,"end":35},"obj":"Protein"},{"id":"T11764","span":{"begin":36,"end":51},"obj":"Phosphorylation"},{"id":"T11765","span":{"begin":119,"end":126},"obj":"Negative_regulation"},{"id":"T11766","span":{"begin":134,"end":139},"obj":"Protein"},{"id":"T11767","span":{"begin":141,"end":147},"obj":"Protein"},{"id":"T11768","span":{"begin":209,"end":214},"obj":"Protein"},{"id":"T11769","span":{"begin":237,"end":242},"obj":"Protein"}],"relations":[{"id":"R9455","pred":"causeOf","subj":"T11761","obj":"T11762"},{"id":"R9456","pred":"themeOf","subj":"T11763","obj":"T11764"},{"id":"R9457","pred":"themeOf","subj":"T11764","obj":"T11762"},{"id":"R9458","pred":"themeOf","subj":"T11766","obj":"T11765"}],"text":"To determine if NleH1 inhibits RPS3 phosphorylation, we infected HeLa cells with E. coli O157:H7 strains possessing or lacking either nleH1 (ΔnleH1) or with a strain lacking a functional T3SS unable to inject NleH1 into mammalian cells (ΔescN)."}