> top > docs > PMC:3062687 > spans > 13401-13609 > annotations

PMC:3062687 / 13401-13609 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9808 13-17 P23396 denotes RPS3
T9809 52-56 P23396 denotes RPS3
T9810 145-149 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9393 0-2 IN denotes As
T9394 3-11 VB denotes expected
T9395 11-12 -COMMA- denotes ,
T9396 13-17 NN denotes RPS3
T9397 18-23 NN denotes siRNA
T9398 24-32 RB denotes severely
T9399 33-40 VB denotes reduced
T9400 41-51 JJ denotes endogenous
T9401 52-56 NN denotes RPS3
T9402 57-66 NN denotes abundance
T9403 67-75 VB denotes compared
T9404 76-78 TO denotes to
T9405 79-81 NN denotes NS
T9406 82-87 NN denotes siRNA
T9407 87-88 -COMMA- denotes ,
T9408 89-92 CC denotes but
T9409 93-96 VB denotes did
T9410 97-100 RB denotes not
T9411 101-107 VB denotes affect
T9412 108-111 DT denotes the
T9413 112-118 JJ denotes robust
T9414 119-129 NN denotes expression
T9415 130-132 IN denotes of
T9416 133-144 JJ denotes Flag-tagged
T9417 145-149 NN denotes RPS3
T9418 150-154 IN denotes from
T9419 155-156 DT denotes a
T9420 157-168 VB denotes transfected
T9421 169-178 NN denotes construct
T9422 179-186 VB denotes lacking
T9423 187-190 DT denotes the
T9424 191-193 NN denotes 3′
T9425 194-197 NN denotes UTR
T9426 198-199 -LRB- denotes (
T9427 199-203 NN denotes Fig.
T9428 204-206 NN denotes 5c
T9429 206-207 -RRB- denotes )
R7509 T9394 T9393 arg2Of expected,As
R7510 T9397 T9396 arg1Of siRNA,RPS3
R7511 T9397 T9399 arg1Of siRNA,reduced
R7512 T9397 T9409 arg1Of siRNA,did
R7513 T9397 T9411 arg1Of siRNA,affect
R7514 T9399 T9403 arg1Of reduced,compared
R7515 T9399 T9408 arg1Of reduced,but
R7516 T9402 T9399 arg2Of abundance,reduced
R7517 T9402 T9400 arg1Of abundance,endogenous
R7518 T9402 T9401 arg1Of abundance,RPS3
R7519 T9404 T9403 arg2Of to,compared
R7520 T9406 T9404 arg2Of siRNA,to
R7521 T9406 T9405 arg1Of siRNA,NS
R7522 T9408 T9393 arg1Of but,As
R7523 T9408 T9395 arg1Of but,","
R7524 T9408 T9398 arg1Of but,severely
R7525 T9408 T9407 arg1Of but,","
R7526 T9411 T9408 arg2Of affect,but
R7527 T9411 T9409 arg2Of affect,did
R7528 T9411 T9410 arg1Of affect,not
R7529 T9414 T9411 arg2Of expression,affect
R7530 T9414 T9412 arg1Of expression,the
R7531 T9414 T9413 arg1Of expression,robust
R7532 T9414 T9415 arg1Of expression,of
R7533 T9417 T9415 arg2Of RPS3,of
R7534 T9417 T9416 arg1Of RPS3,Flag-tagged
R7535 T9417 T9418 arg1Of RPS3,from
R7536 T9421 T9418 arg2Of construct,from
R7537 T9421 T9419 arg1Of construct,a
R7538 T9421 T9420 arg2Of construct,transfected
R7539 T9421 T9422 arg1Of construct,lacking
R7540 T9425 T9422 arg2Of UTR,lacking
R7541 T9425 T9423 arg1Of UTR,the
R7542 T9425 T9424 arg1Of UTR,3′
R7543 T9425 T9426 arg1Of UTR,(
R7544 T9428 T9426 arg2Of 5c,(
R7545 T9428 T9427 arg1Of 5c,Fig.
R7546 T9429 T9426 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10082 0-2 IN denotes As
T10083 3-11 VBN denotes expected
T10084 11-12 , denotes ,
T10085 13-17 NNP denotes RPS3
T10086 18-23 NNP denotes siRNA
T10087 24-32 RB denotes severely
T10088 33-40 VBD denotes reduced
T10089 41-51 JJ denotes endogenous
T10090 52-56 NNP denotes RPS3
T10091 57-66 NN denotes abundance
T10092 67-75 VBN denotes compared
T10093 76-78 TO denotes to
T10094 79-81 NNP denotes NS
T10095 82-87 NNP denotes siRNA
T10096 87-88 , denotes ,
T10097 89-92 CC denotes but
T10098 93-96 VBD denotes did
T10099 97-100 RB denotes not
T10100 101-107 VB denotes affect
T10101 108-111 DT denotes the
T10102 112-118 JJ denotes robust
T10103 119-129 NN denotes expression
T10104 130-132 IN denotes of
T10105 133-144 JJ denotes Flag-tagged
T10106 145-149 NN denotes RPS3
T10107 150-154 IN denotes from
T10108 155-156 DT denotes a
T10109 157-168 VBN denotes transfected
T10110 169-178 VBP denotes construct
T10111 179-186 VBG denotes lacking
T10112 187-190 DT denotes the
T10113 191-192 CD denotes 3
T10114 192-193 NN denotes ′
T10115 194-197 NNP denotes UTR
T10116 198-199 -LRB- denotes (
T10117 199-203 NNP denotes Fig.
T10118 204-206 CD denotes 5c
T10119 206-207 -RRB- denotes )
T10120 207-208 . denotes .
R8138 T10082 T10083 mark As,expected
R8139 T10083 T10088 advcl expected,reduced
R8140 T10084 T10088 punct ",",reduced
R8141 T10085 T10086 compound RPS3,siRNA
R8142 T10086 T10088 nsubj siRNA,reduced
R8143 T10087 T10088 advmod severely,reduced
R8144 T10088 T10088 ROOT reduced,reduced
R8145 T10089 T10091 amod endogenous,abundance
R8146 T10090 T10091 compound RPS3,abundance
R8147 T10091 T10088 dobj abundance,reduced
R8148 T10092 T10088 prep compared,reduced
R8149 T10093 T10092 prep to,compared
R8150 T10094 T10095 compound NS,siRNA
R8151 T10095 T10093 pobj siRNA,to
R8152 T10096 T10088 punct ",",reduced
R8153 T10097 T10088 cc but,reduced
R8154 T10098 T10100 aux did,affect
R8155 T10099 T10100 neg not,affect
R8156 T10100 T10088 conj affect,reduced
R8157 T10101 T10103 det the,expression
R8158 T10102 T10103 amod robust,expression
R8159 T10103 T10100 dobj expression,affect
R8160 T10104 T10103 prep of,expression
R8161 T10105 T10106 amod Flag-tagged,RPS3
R8162 T10106 T10104 pobj RPS3,of
R8163 T10107 T10100 prep from,affect
R8164 T10108 T10110 det a,construct
R8165 T10109 T10110 amod transfected,construct
R8166 T10110 T10100 conj construct,affect
R8167 T10111 T10110 advcl lacking,construct
R8168 T10112 T10115 det the,UTR
R8169 T10113 T10114 nummod 3,′
R8170 T10114 T10115 compound ′,UTR
R8171 T10115 T10111 dobj UTR,lacking
R8172 T10116 T10117 punct (,Fig.
R8173 T10117 T10115 appos Fig.,UTR
R8174 T10118 T10117 nummod 5c,Fig.
R8175 T10119 T10115 punct ),UTR
R8176 T10120 T10088 punct .,reduced

sentences

Id Subject Object Predicate Lexical cue
T9164 0-208 Sentence denotes As expected, RPS3 siRNA severely reduced endogenous RPS3 abundance compared to NS siRNA, but did not affect the robust expression of Flag-tagged RPS3 from a transfected construct lacking the 3′ UTR (Fig. 5c).
T95 0-208 Sentence denotes As expected, RPS3 siRNA severely reduced endogenous RPS3 abundance compared to NS siRNA, but did not affect the robust expression of Flag-tagged RPS3 from a transfected construct lacking the 3′ UTR (Fig. 5c).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T11359 13-23 Protein denotes RPS3 siRNA
T11360 33-40 Negative_regulation denotes reduced
T11361 52-56 Protein denotes RPS3
T11362 101-107 Regulation denotes affect true
T11363 119-129 Gene_expression denotes expression
T11364 133-149 Protein denotes Flag-tagged RPS3
R9176 T11359 T11360 causeOf RPS3 siRNA,reduced
R9177 T11359 T11362 causeOf RPS3 siRNA,affect
R9178 T11361 T11360 themeOf RPS3,reduced
R9179 T11363 T11362 themeOf expression,affect
R9180 T11364 T11363 themeOf Flag-tagged RPS3,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11203 33-40 Negative_regulation denotes reduced
T11204 119-129 Gene_expression denotes expression
T11205 101-107 Regulation denotes affect
T11198 13-23 Protein denotes RPS3 siRNA
T11199 52-56 Protein denotes RPS3
T11200 79-87 Protein denotes NS siRNA
T11201 133-137 Protein denotes Flag
T11202 145-149 Protein denotes RPS3
R9010 T11198 T11203 causeOf RPS3 siRNA,reduced
R9016 T11198 T11205 causeOf RPS3 siRNA,affect
R9018 T11200 T11203 themeOf NS siRNA,reduced
R9019 T11202 T11204 themeOf RPS3,expression
R9022 T11204 T11205 themeOf expression,affect

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T9050 13-23 Protein denotes RPS3 siRNA
T9051 33-40 Negative_regulation denotes reduced
T9052 52-56 Protein denotes RPS3
T9053 101-107 Regulation denotes affect true
T9054 119-129 Gene_expression denotes expression
T9055 133-149 Protein denotes Flag-tagged RPS3
R7208 T9050 T9051 causeOf RPS3 siRNA,reduced
R7209 T9050 T9053 causeOf RPS3 siRNA,affect
R7210 T9052 T9051 themeOf RPS3,reduced
R7211 T9054 T9053 themeOf expression,affect
R7212 T9055 T9054 themeOf Flag-tagged RPS3,expression

test2

Id Subject Object Predicate Lexical cue Negation
T8909 13-23 Protein denotes RPS3 siRNA
T8910 33-40 Negative_regulation denotes reduced true
T8911 52-56 Protein denotes RPS3
T8912 101-107 Regulation denotes affect true
T8913 119-129 Gene_expression denotes expression
T8914 133-149 Protein denotes Flag-tagged RPS3
T8915 179-186 Negative_regulation denotes lacking true
R7101 T8909 T8910 causeOf RPS3 siRNA,reduced
R7102 T8909 T8912 causeOf RPS3 siRNA,affect
R7103 T8911 T8910 themeOf RPS3,reduced
R7104 T8913 T8912 themeOf expression,affect
R7105 T8914 T8913 themeOf Flag-tagged RPS3,expression