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PMC:3062687 / 13112-13400 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9804 47-51 P23396 denotes RPS3
T9805 106-110 P23396 denotes RPS3
T9806 189-193 P23396 denotes RPS3
T9807 266-270 P23396 denotes RPS3

2_test

Id Subject Object Predicate Lexical cue
21399639-18045535-74765162 73-74 18045535 denotes 6
21399639-18045535-74765162 73-74 18045535 denotes 6
21399639-20066093-74765163 76-77 20066093 denotes 7
21399639-20066093-74765163 76-77 20066093 denotes 7
21399639-19997086-74765164 79-81 19997086 denotes 30
21399639-19997086-74765164 79-81 19997086 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9341 0-2 TO denotes To
T9342 3-10 VB denotes examine
T9343 11-14 DT denotes the
T9344 15-19 NN denotes role
T9345 20-22 IN denotes of
T9346 23-27 NN denotes S209
T9347 28-43 NN denotes phosphorylation
T9348 44-46 IN denotes of
T9349 47-51 NN denotes RPS3
T9350 52-54 TO denotes to
T9351 55-58 PRP-DOLLAR- denotes its
T9352 59-64 NN denotes NF-κB
T9353 65-74 NN denotes function6
T9354 74-75 -COMMA- denotes ,
T9355 76-77 CD denotes 7
T9356 77-78 -COMMA- denotes ,
T9357 79-81 CD denotes 30
T9358 81-82 -COMMA- denotes ,
T9359 83-85 PRP denotes we
T9360 86-94 VB denotes silenced
T9361 95-105 JJ denotes endogenous
T9362 106-110 NN denotes RPS3
T9363 111-121 NN denotes expression
T9364 122-127 VB denotes using
T9365 128-130 DT denotes an
T9366 131-136 NN denotes siRNA
T9367 137-141 WDT denotes that
T9368 142-149 VB denotes targets
T9369 150-153 DT denotes the
T9370 154-156 CD denotes 3′
T9371 157-169 JJ denotes untranslated
T9372 170-176 NN denotes region
T9373 177-178 -LRB- denotes (
T9374 178-180 CD denotes 3′
T9375 181-184 NN denotes UTR
T9376 184-185 -RRB- denotes )
T9377 186-188 IN denotes of
T9378 189-193 NN denotes RPS3
T9379 194-198 NN denotes mRNA
T9380 198-199 -COMMA- denotes ,
T9381 200-208 VB denotes followed
T9382 209-211 IN denotes by
T9383 212-227 NN denotes complementation
T9384 228-232 IN denotes with
T9385 233-239 CC denotes either
T9386 240-249 JJ denotes wild-type
T9387 250-252 CC denotes or
T9388 253-258 NN denotes S209A
T9389 259-265 JJ denotes mutant
T9390 266-270 NN denotes RPS3
T9391 271-274 IN denotes via
T9392 275-287 NN denotes transfection
R7458 T9342 T9341 arg1Of examine,To
R7459 T9344 T9342 arg2Of role,examine
R7460 T9344 T9343 arg1Of role,the
R7461 T9344 T9345 arg1Of role,of
R7462 T9347 T9345 arg2Of phosphorylation,of
R7463 T9347 T9346 arg1Of phosphorylation,S209
R7464 T9347 T9348 arg1Of phosphorylation,of
R7465 T9349 T9348 arg2Of RPS3,of
R7466 T9349 T9350 arg1Of RPS3,to
R7467 T9353 T9350 arg2Of function6,to
R7468 T9353 T9351 arg1Of function6,its
R7469 T9353 T9352 arg1Of function6,NF-κB
R7470 T9353 T9354 arg1Of function6,","
R7471 T9353 T9356 arg1Of function6,","
R7472 T9355 T9354 arg2Of 7,","
R7473 T9357 T9356 arg2Of 30,","
R7474 T9359 T9360 arg1Of we,silenced
R7475 T9360 T9341 modOf silenced,To
R7476 T9360 T9358 arg1Of silenced,","
R7477 T9363 T9360 arg2Of expression,silenced
R7478 T9363 T9361 arg1Of expression,endogenous
R7479 T9363 T9362 arg1Of expression,RPS3
R7480 T9363 T9364 arg1Of expression,using
R7481 T9366 T9364 arg2Of siRNA,using
R7482 T9366 T9365 arg1Of siRNA,an
R7483 T9366 T9367 arg1Of siRNA,that
R7484 T9366 T9368 arg1Of siRNA,targets
R7485 T9368 T9380 arg1Of targets,","
R7486 T9368 T9381 modOf targets,followed
R7487 T9372 T9368 arg2Of region,targets
R7488 T9372 T9369 arg1Of region,the
R7489 T9372 T9370 arg1Of region,3′
R7490 T9372 T9371 arg1Of region,untranslated
R7491 T9372 T9373 arg1Of region,(
R7492 T9372 T9377 arg1Of region,of
R7493 T9375 T9373 arg2Of UTR,(
R7494 T9375 T9374 arg1Of UTR,3′
R7495 T9376 T9373 arg3Of ),(
R7496 T9379 T9377 arg2Of mRNA,of
R7497 T9379 T9378 arg1Of mRNA,RPS3
R7498 T9381 T9391 arg1Of followed,via
R7499 T9383 T9381 arg1Of complementation,followed
R7500 T9383 T9382 arg2Of complementation,by
R7501 T9383 T9384 arg1Of complementation,with
R7502 T9390 T9384 arg2Of RPS3,with
R7503 T9390 T9385 arg1Of RPS3,either
R7504 T9390 T9386 arg1Of RPS3,wild-type
R7505 T9390 T9387 arg1Of RPS3,or
R7506 T9390 T9388 arg1Of RPS3,S209A
R7507 T9390 T9389 arg1Of RPS3,mutant
R7508 T9392 T9391 arg2Of transfection,via

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10027 0-2 TO denotes To
T10028 3-10 VB denotes examine
T10029 11-14 DT denotes the
T10030 15-19 NN denotes role
T10031 20-22 IN denotes of
T10032 23-27 CD denotes S209
T10033 28-43 NN denotes phosphorylation
T10034 44-46 IN denotes of
T10035 47-51 CD denotes RPS3
T10036 52-54 TO denotes to
T10037 55-58 PRP$ denotes its
T10038 59-64 NNP denotes NF-κB
T10039 65-74 CD denotes function6
T10040 74-75 , denotes ,
T10041 76-77 CD denotes 7
T10042 77-78 , denotes ,
T10043 79-81 CD denotes 30
T10044 81-82 , denotes ,
T10045 83-85 PRP denotes we
T10046 86-94 VBD denotes silenced
T10047 95-105 JJ denotes endogenous
T10048 106-110 NNP denotes RPS3
T10049 111-121 NN denotes expression
T10050 122-127 VBG denotes using
T10051 128-130 DT denotes an
T10052 131-136 NN denotes siRNA
T10053 137-141 WDT denotes that
T10054 142-149 VBZ denotes targets
T10055 150-153 DT denotes the
T10056 154-155 CD denotes 3
T10057 155-156 NN denotes ′
T10058 157-169 JJ denotes untranslated
T10059 170-176 NN denotes region
T10060 177-178 -LRB- denotes (
T10061 178-179 CD denotes 3
T10062 179-180 CD denotes ′
T10063 181-184 NNP denotes UTR
T10064 184-185 -RRB- denotes )
T10065 186-188 IN denotes of
T10066 189-193 CD denotes RPS3
T10067 194-198 NNP denotes mRNA
T10068 198-199 , denotes ,
T10069 200-208 VBN denotes followed
T10070 209-211 IN denotes by
T10071 212-227 NN denotes complementation
T10072 228-232 IN denotes with
T10073 233-239 DT denotes either
T10074 240-249 JJ denotes wild-type
T10075 250-252 CC denotes or
T10076 253-258 JJ denotes S209A
T10077 259-265 JJ denotes mutant
T10078 266-270 NN denotes RPS3
T10079 271-274 IN denotes via
T10080 275-287 NN denotes transfection
T10081 287-288 . denotes .
R8083 T10027 T10028 aux To,examine
R8084 T10028 T10046 advcl examine,silenced
R8085 T10029 T10030 det the,role
R8086 T10030 T10028 dobj role,examine
R8087 T10031 T10030 prep of,role
R8088 T10032 T10033 nummod S209,phosphorylation
R8089 T10033 T10031 pobj phosphorylation,of
R8090 T10034 T10033 prep of,phosphorylation
R8091 T10035 T10034 pobj RPS3,of
R8092 T10036 T10046 prep to,silenced
R8093 T10037 T10039 poss its,function6
R8094 T10038 T10039 compound NF-κB,function6
R8095 T10039 T10036 pobj function6,to
R8096 T10040 T10039 punct ",",function6
R8097 T10041 T10039 appos 7,function6
R8098 T10042 T10039 punct ",",function6
R8099 T10043 T10039 appos 30,function6
R8100 T10044 T10046 punct ",",silenced
R8101 T10045 T10046 nsubj we,silenced
R8102 T10046 T10046 ROOT silenced,silenced
R8103 T10047 T10049 amod endogenous,expression
R8104 T10048 T10049 compound RPS3,expression
R8105 T10049 T10046 dobj expression,silenced
R8106 T10050 T10046 advcl using,silenced
R8107 T10051 T10052 det an,siRNA
R8108 T10052 T10050 dobj siRNA,using
R8109 T10053 T10054 nsubj that,targets
R8110 T10054 T10052 relcl targets,siRNA
R8111 T10055 T10059 det the,region
R8112 T10056 T10057 nummod 3,′
R8113 T10057 T10059 nmod ′,region
R8114 T10058 T10059 amod untranslated,region
R8115 T10059 T10054 dobj region,targets
R8116 T10060 T10059 punct (,region
R8117 T10061 T10062 nummod 3,′
R8118 T10062 T10063 nummod ′,UTR
R8119 T10063 T10059 appos UTR,region
R8120 T10064 T10059 punct ),region
R8121 T10065 T10059 prep of,region
R8122 T10066 T10067 nummod RPS3,mRNA
R8123 T10067 T10065 pobj mRNA,of
R8124 T10068 T10046 punct ",",silenced
R8125 T10069 T10046 advcl followed,silenced
R8126 T10070 T10069 agent by,followed
R8127 T10071 T10070 pobj complementation,by
R8128 T10072 T10069 prep with,followed
R8129 T10073 T10074 preconj either,wild-type
R8130 T10074 T10078 amod wild-type,RPS3
R8131 T10075 T10074 cc or,wild-type
R8132 T10076 T10074 conj S209A,wild-type
R8133 T10077 T10078 amod mutant,RPS3
R8134 T10078 T10072 pobj RPS3,with
R8135 T10079 T10078 prep via,RPS3
R8136 T10080 T10079 pobj transfection,via
R8137 T10081 T10046 punct .,silenced

GO-BP

Id Subject Object Predicate Lexical cue
T10672 28-43 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

sentences

Id Subject Object Predicate Lexical cue
T9163 0-288 Sentence denotes To examine the role of S209 phosphorylation of RPS3 to its NF-κB function6, 7, 30, we silenced endogenous RPS3 expression using an siRNA that targets the 3′ untranslated region (3′ UTR) of RPS3 mRNA, followed by complementation with either wild-type or S209A mutant RPS3 via transfection.
T94 0-288 Sentence denotes To examine the role of S209 phosphorylation of RPS3 to its NF-κB function6, 7, 30, we silenced endogenous RPS3 expression using an siRNA that targets the 3′ untranslated region (3′ UTR) of RPS3 mRNA, followed by complementation with either wild-type or S209A mutant RPS3 via transfection.

events-check-again

Id Subject Object Predicate Lexical cue
T11350 23-27 Entity denotes S209
T11351 28-43 Phosphorylation denotes phosphorylation
T11352 47-51 Protein denotes RPS3
T11353 86-94 Negative_regulation denotes silenced
T11354 106-110 Protein denotes RPS3
T11355 111-121 Gene_expression denotes expression
T11356 189-193 Protein denotes RPS3
T11357 266-270 Protein denotes RPS3
T11358 275-287 Gene_expression denotes transfection
R9167 T11350 T11351 themeOf S209,phosphorylation
R9171 T11350 T11352 partOf S209,RPS3
R9172 T11354 T11355 themeOf RPS3,expression
R9174 T11355 T11353 themeOf expression,silenced
R9175 T11357 T11358 themeOf RPS3,transfection

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T11038 23-27 Protein denotes S209
T11039 47-51 Protein denotes RPS3
T11040 59-64 Protein denotes NF-κB
T11041 106-110 Protein denotes RPS3
T11042 189-198 Protein denotes RPS3 mRNA
T11043 253-265 Protein denotes S209A mutant
T11044 266-270 Protein denotes RPS3
T11045 28-43 Phosphorylation denotes phosphorylation
T11046 28-43 Phosphorylation denotes phosphorylation
T11047 111-121 Gene_expression denotes expression
T11191 212-227 Binding denotes complementation
T11192 212-227 Binding denotes complementation
T11193 15-19 Positive_regulation denotes role
T11194 15-19 Positive_regulation denotes role
T11195 86-94 Positive_regulation denotes silenced
T11196 142-149 Regulation denotes targets
T11197 142-149 Regulation denotes targets
R8924 T11038 T11045 themeOf S209,phosphorylation
R8927 T11039 T11046 themeOf RPS3,phosphorylation
R8932 T11041 T11047 themeOf RPS3,expression
R8939 T11042 T11196 themeOf RPS3 mRNA,targets
R8941 T11042 T11197 themeOf RPS3 mRNA,targets
R8943 T11043 T11191 themeOf S209A mutant,complementation
R8947 T11044 T11192 themeOf RPS3,complementation
R8949 T11045 T11193 themeOf phosphorylation,role
R8952 T11046 T11194 themeOf phosphorylation,role
R8955 T11047 T11195 themeOf expression,silenced
R9004 T11191 T11196 causeOf complementation,targets
R9008 T11192 T11197 causeOf complementation,targets

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T9041 23-27 Entity denotes S209
T9042 28-43 Phosphorylation denotes phosphorylation
T9043 47-51 Protein denotes RPS3
T9044 86-94 Negative_regulation denotes silenced
T9045 106-110 Protein denotes RPS3
T9046 111-121 Gene_expression denotes expression
T9047 189-193 Protein denotes RPS3
T9048 266-270 Protein denotes RPS3
T9049 275-287 Gene_expression denotes transfection
R7203 T9041 T9042 themeOf S209,phosphorylation
R7204 T9041 T9043 partOf S209,RPS3
R7205 T9045 T9046 themeOf RPS3,expression
R7206 T9046 T9044 themeOf expression,silenced
R7207 T9048 T9049 themeOf RPS3,transfection

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T8900 15-19 Regulation denotes role
T8901 23-27 Entity denotes S209 true
T8902 28-43 Phosphorylation denotes phosphorylation
T8903 47-51 Protein denotes RPS3 true
T8904 86-94 Negative_regulation denotes silenced
T8905 106-110 Protein denotes RPS3
T8906 111-121 Gene_expression denotes expression true
T8907 189-193 Protein denotes RPS3
T8908 266-270 Protein denotes RPS3 true
R7096 T8901 T8902 themeOf S209,phosphorylation
R7097 T8901 T8903 partOf S209,RPS3
R7098 T8903 T8902 themeOf RPS3,phosphorylation
R7099 T8905 T8906 themeOf RPS3,expression
R7100 T8906 T8904 themeOf expression,silenced