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PMC:3062687 / 12284-12551 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9795 60-64 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9203 0-11 JJ denotes Subcellular
T9204 12-21 NN denotes fractions
T9205 22-26 IN denotes from
T9206 27-33 CC denotes either
T9207 34-43 JJ denotes wild-type
T9208 44-46 CC denotes or
T9209 47-52 NN denotes S209A
T9210 53-59 JJ denotes mutant
T9211 60-76 JJ denotes RPS3-transfected
T9212 77-82 NN denotes cells
T9213 83-87 VB denotes were
T9214 88-96 VB denotes prepared
T9215 97-100 CC denotes and
T9216 101-108 VB denotes blotted
T9217 109-112 IN denotes for
T9218 113-123 NN denotes heat-shock
T9219 124-131 NN denotes protein
T9220 132-134 CD denotes 90
T9221 135-136 -LRB- denotes (
T9222 136-141 NN denotes hsp90
T9223 141-142 -RRB- denotes )
T9224 142-143 -COMMA- denotes ,
T9225 144-145 DT denotes a
T9226 146-157 JJ denotes cytoplasmic
T9227 158-165 NN denotes protein
T9228 165-166 -COMMA- denotes ,
T9229 167-170 CC denotes and
T9230 171-175 NN denotes poly
T9231 176-177 -LRB- denotes (
T9232 177-187 NN denotes ADP-ribose
T9233 187-188 -RRB- denotes )
T9234 189-199 NN denotes polymerase
T9235 200-201 -LRB- denotes (
T9236 201-205 NN denotes PARP
T9237 205-206 -RRB- denotes )
T9238 206-207 -COMMA- denotes ,
T9239 208-209 DT denotes a
T9240 210-217 JJ denotes nuclear
T9241 218-225 NN denotes protein
T9242 225-226 -COMMA- denotes ,
T9243 227-237 VB denotes confirming
T9244 238-239 DT denotes a
T9245 240-245 JJ denotes clean
T9246 246-256 NN denotes separation
T9247 257-258 -LRB- denotes (
T9248 258-262 NN denotes Fig.
T9249 263-265 NN denotes 5a
T9250 265-266 -RRB- denotes )
R7354 T9234 T9229 arg2Of polymerase,and
R7320 T9204 T9203 arg1Of fractions,Subcellular
R7321 T9204 T9205 arg1Of fractions,from
R7322 T9204 T9213 arg1Of fractions,were
R7323 T9204 T9214 arg2Of fractions,prepared
R7324 T9204 T9216 arg2Of fractions,blotted
R7325 T9207 T9208 arg1Of wild-type,or
R7326 T9209 T9208 arg2Of S209A,or
R7327 T9212 T9205 arg2Of cells,from
R7328 T9212 T9206 arg1Of cells,either
R7329 T9212 T9207 arg1Of cells,wild-type
R7330 T9212 T9209 arg1Of cells,S209A
R7331 T9212 T9210 arg1Of cells,mutant
R7332 T9212 T9211 arg1Of cells,RPS3-transfected
R7333 T9214 T9215 arg1Of prepared,and
R7334 T9215 T9213 arg2Of and,were
R7335 T9215 T9217 arg1Of and,for
R7336 T9215 T9242 arg1Of and,","
R7337 T9215 T9243 modOf and,confirming
R7338 T9216 T9215 arg2Of blotted,and
R7339 T9219 T9218 arg1Of protein,heat-shock
R7340 T9219 T9220 arg1Of protein,90
R7341 T9219 T9221 arg1Of protein,(
R7342 T9219 T9224 arg1Of protein,","
R7343 T9219 T9229 arg1Of protein,and
R7344 T9222 T9221 arg2Of hsp90,(
R7345 T9223 T9221 arg3Of ),(
R7346 T9227 T9224 arg2Of protein,","
R7347 T9227 T9225 arg1Of protein,a
R7348 T9227 T9226 arg1Of protein,cytoplasmic
R7349 T9229 T9217 arg2Of and,for
R7350 T9229 T9228 arg1Of and,","
R7351 T9229 T9238 arg1Of and,","
R7352 T9232 T9231 arg2Of ADP-ribose,(
R7353 T9233 T9231 arg3Of ),(
R7355 T9234 T9230 arg1Of polymerase,poly
R7356 T9234 T9231 arg1Of polymerase,(
R7357 T9234 T9235 arg1Of polymerase,(
R7358 T9236 T9235 arg2Of PARP,(
R7359 T9237 T9235 arg3Of ),(
R7360 T9241 T9238 arg2Of protein,","
R7361 T9241 T9239 arg1Of protein,a
R7362 T9241 T9240 arg1Of protein,nuclear
R7363 T9246 T9243 arg2Of separation,confirming
R7364 T9246 T9244 arg1Of separation,a
R7365 T9246 T9245 arg1Of separation,clean
R7366 T9246 T9247 arg1Of separation,(
R7367 T9249 T9247 arg2Of 5a,(
R7368 T9249 T9248 arg1Of 5a,Fig.
R7369 T9250 T9247 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9883 0-11 JJ denotes Subcellular
T9884 12-21 NNS denotes fractions
T9885 22-26 IN denotes from
T9886 27-33 DT denotes either
T9887 34-43 JJ denotes wild-type
T9888 44-46 CC denotes or
T9889 47-52 JJ denotes S209A
T9890 53-59 JJ denotes mutant
T9891 60-76 JJ denotes RPS3-transfected
T9892 77-82 NNS denotes cells
T9893 83-87 VBD denotes were
T9894 88-96 VBN denotes prepared
T9895 97-100 CC denotes and
T9896 101-108 VBN denotes blotted
T9897 109-112 IN denotes for
T9898 113-123 JJ denotes heat-shock
T9899 124-131 NN denotes protein
T9900 132-134 CD denotes 90
T9901 135-136 -LRB- denotes (
T9902 136-141 CD denotes hsp90
T9903 141-142 -RRB- denotes )
T9904 142-143 , denotes ,
T9905 144-145 DT denotes a
T9906 146-157 JJ denotes cytoplasmic
T9907 158-165 NN denotes protein
T9908 165-166 , denotes ,
T9909 167-170 CC denotes and
T9910 171-175 NN denotes poly
T9911 176-177 -LRB- denotes (
T9912 177-187 JJ denotes ADP-ribose
T9913 187-188 -RRB- denotes )
T9914 189-199 NN denotes polymerase
T9915 200-201 -LRB- denotes (
T9916 201-205 NNP denotes PARP
T9917 205-206 -RRB- denotes )
T9918 206-207 , denotes ,
T9919 208-209 DT denotes a
T9920 210-217 JJ denotes nuclear
T9921 218-225 NN denotes protein
T9922 225-226 , denotes ,
T9923 227-237 VBG denotes confirming
T9924 238-239 DT denotes a
T9925 240-245 JJ denotes clean
T9926 246-256 NN denotes separation
T9927 257-258 -LRB- denotes (
T9928 258-262 NNP denotes Fig.
T9929 263-265 CD denotes 5a
T9930 265-266 -RRB- denotes )
T9931 266-267 . denotes .
R7939 T9883 T9884 amod Subcellular,fractions
R7940 T9884 T9894 nsubjpass fractions,prepared
R7941 T9885 T9884 prep from,fractions
R7942 T9886 T9887 preconj either,wild-type
R7943 T9887 T9892 nmod wild-type,cells
R7944 T9888 T9887 cc or,wild-type
R7945 T9889 T9890 advmod S209A,mutant
R7946 T9890 T9887 conj mutant,wild-type
R7947 T9891 T9892 amod RPS3-transfected,cells
R7948 T9892 T9885 pobj cells,from
R7949 T9893 T9894 auxpass were,prepared
R7950 T9894 T9894 ROOT prepared,prepared
R7951 T9895 T9894 cc and,prepared
R7952 T9896 T9894 conj blotted,prepared
R7953 T9897 T9896 prep for,blotted
R7954 T9898 T9899 compound heat-shock,protein
R7955 T9899 T9897 pobj protein,for
R7956 T9900 T9899 nummod 90,protein
R7957 T9901 T9899 punct (,protein
R7958 T9902 T9899 appos hsp90,protein
R7959 T9903 T9899 punct ),protein
R7960 T9904 T9896 punct ",",blotted
R7961 T9905 T9907 det a,protein
R7962 T9906 T9907 amod cytoplasmic,protein
R7963 T9907 T9896 conj protein,blotted
R7964 T9908 T9907 punct ",",protein
R7965 T9909 T9907 cc and,protein
R7966 T9910 T9907 conj poly,protein
R7967 T9911 T9910 punct (,poly
R7968 T9912 T9910 appos ADP-ribose,poly
R7969 T9913 T9910 punct ),poly
R7970 T9914 T9907 conj polymerase,protein
R7971 T9915 T9914 punct (,polymerase
R7972 T9916 T9914 appos PARP,polymerase
R7973 T9917 T9914 punct ),polymerase
R7974 T9918 T9914 punct ",",polymerase
R7975 T9919 T9921 det a,protein
R7976 T9920 T9921 amod nuclear,protein
R7977 T9921 T9907 appos protein,protein
R7978 T9922 T9907 punct ",",protein
R7979 T9923 T9907 acl confirming,protein
R7980 T9924 T9926 det a,separation
R7981 T9925 T9926 amod clean,separation
R7982 T9926 T9923 dobj separation,confirming
R7983 T9927 T9926 punct (,separation
R7984 T9928 T9926 appos Fig.,separation
R7985 T9929 T9928 nummod 5a,Fig.
R7986 T9930 T9926 punct ),separation
R7987 T9931 T9894 punct .,prepared

GO-BP

Id Subject Object Predicate Lexical cue
T10679 113-131 http://purl.obolibrary.org/obo/GO_0006986 denotes heat-shock protein
T10680 113-131 http://purl.obolibrary.org/obo/GO_0034620 denotes heat-shock protein
T10681 113-131 http://purl.obolibrary.org/obo/GO_0042026 denotes heat-shock protein

GO-CC

Id Subject Object Predicate Lexical cue
T10700 77-82 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9157 0-267 Sentence denotes Subcellular fractions from either wild-type or S209A mutant RPS3-transfected cells were prepared and blotted for heat-shock protein 90 (hsp90), a cytoplasmic protein, and poly (ADP-ribose) polymerase (PARP), a nuclear protein, confirming a clean separation (Fig. 5a).
T88 0-267 Sentence denotes Subcellular fractions from either wild-type or S209A mutant RPS3-transfected cells were prepared and blotted for heat-shock protein 90 (hsp90), a cytoplasmic protein, and poly (ADP-ribose) polymerase (PARP), a nuclear protein, confirming a clean separation (Fig. 5a).

ICD10

Id Subject Object Predicate Lexical cue
T10693 118-123 http://purl.bioontology.org/ontology/ICD10/R57.9 denotes shock

events-check-again

Id Subject Object Predicate Lexical cue
T11319 47-52 Entity denotes S209A
T11320 53-59 Regulation denotes mutant
T11321 60-64 Protein denotes RPS3
R9104 T11319 T11320 themeOf S209A,mutant
R9106 T11319 T11321 partOf S209A,RPS3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10990 60-64 Protein denotes RPS3
T10991 113-134 Protein denotes heat-shock protein 90
T10992 136-141 Protein denotes hsp90
T10993 201-205 Protein denotes PARP
T10994 65-76 Gene_expression denotes transfected
R8867 T10990 T10994 themeOf RPS3,transfected

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T9010 47-52 Entity denotes S209A
T9011 53-59 Regulation denotes mutant
T9012 60-64 Protein denotes RPS3
R7179 T9010 T9011 themeOf S209A,mutant
R7180 T9010 T9012 partOf S209A,RPS3

test2

Id Subject Object Predicate Lexical cue Speculation
T8872 60-64 Protein denotes RPS3
T8873 65-76 Gene_expression denotes transfected true
R7076 T8872 T8873 themeOf RPS3,transfected