PMC:3062687 / 11865-12032
Annnotations
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7667 | 33-37 | P23396 | denotes | RPS3 |
| T7668 | 77-81 | P23396 | denotes | RPS3 |
| T7669 | 141-144 | P01375 | denotes | TNF |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7592 | 0-2 | PRP | denotes | We |
| T7593 | 3-7 | RB | denotes | next |
| T7594 | 8-17 | VB | denotes | generated |
| T7595 | 18-19 | DT | denotes | a |
| T7596 | 20-32 | NN | denotes | phospho-S209 |
| T7597 | 33-37 | NN | denotes | RPS3 |
| T7598 | 38-46 | NN | denotes | antibody |
| T7599 | 47-50 | CC | denotes | and |
| T7600 | 51-60 | VB | denotes | confirmed |
| T7601 | 61-65 | IN | denotes | that |
| T7602 | 66-76 | JJ | denotes | endogenous |
| T7603 | 77-81 | NN | denotes | RPS3 |
| T7604 | 82-85 | VB | denotes | was |
| T7605 | 86-100 | VB | denotes | phosphorylated |
| T7606 | 101-103 | IN | denotes | at |
| T7607 | 104-108 | NN | denotes | S209 |
| T7608 | 109-111 | IN | denotes | in |
| T7609 | 112-113 | DT | denotes | a |
| T7610 | 114-128 | JJ | denotes | time-dependent |
| T7611 | 129-135 | NN | denotes | manner |
| T7612 | 136-140 | IN | denotes | upon |
| T7613 | 141-144 | NN | denotes | TNF |
| T7614 | 145-156 | NN | denotes | stimulation |
| T7615 | 157-158 | -LRB- | denotes | ( |
| T7616 | 158-162 | NN | denotes | Fig. |
| T7617 | 163-165 | NN | denotes | 4e |
| T7618 | 165-166 | -RRB- | denotes | ) |
| R6085 | T7592 | T7594 | arg1Of | We,generated |
| R6086 | T7592 | T7600 | arg1Of | We,confirmed |
| R6087 | T7594 | T7599 | arg1Of | generated,and |
| R6088 | T7598 | T7594 | arg2Of | antibody,generated |
| R6089 | T7598 | T7595 | arg1Of | antibody,a |
| R6090 | T7598 | T7596 | arg1Of | antibody,phospho-S209 |
| R6091 | T7598 | T7597 | arg1Of | antibody,RPS3 |
| R6092 | T7599 | T7593 | arg1Of | and,next |
| R6093 | T7600 | T7599 | arg2Of | confirmed,and |
| R6094 | T7603 | T7602 | arg1Of | RPS3,endogenous |
| R6095 | T7603 | T7604 | arg1Of | RPS3,was |
| R6096 | T7603 | T7605 | arg2Of | RPS3,phosphorylated |
| R6097 | T7605 | T7600 | arg2Of | phosphorylated,confirmed |
| R6098 | T7605 | T7601 | arg1Of | phosphorylated,that |
| R6099 | T7605 | T7604 | arg2Of | phosphorylated,was |
| R6100 | T7605 | T7606 | arg1Of | phosphorylated,at |
| R6101 | T7605 | T7608 | arg1Of | phosphorylated,in |
| R6102 | T7605 | T7612 | arg1Of | phosphorylated,upon |
| R6103 | T7607 | T7606 | arg2Of | S209,at |
| R6104 | T7611 | T7608 | arg2Of | manner,in |
| R6105 | T7611 | T7609 | arg1Of | manner,a |
| R6106 | T7611 | T7610 | arg1Of | manner,time-dependent |
| R6107 | T7614 | T7612 | arg2Of | stimulation,upon |
| R6108 | T7614 | T7613 | arg1Of | stimulation,TNF |
| R6109 | T7614 | T7615 | arg1Of | stimulation,( |
| R6110 | T7617 | T7615 | arg2Of | 4e,( |
| R6111 | T7617 | T7616 | arg1Of | 4e,Fig. |
| R6112 | T7618 | T7615 | arg3Of | ),( |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8120 | 0-2 | PRP | denotes | We |
| T8121 | 3-7 | JJ | denotes | next |
| T8122 | 8-17 | VBD | denotes | generated |
| T8123 | 18-19 | DT | denotes | a |
| T8124 | 20-32 | JJ | denotes | phospho-S209 |
| T8125 | 33-37 | NN | denotes | RPS3 |
| T8126 | 38-46 | NN | denotes | antibody |
| T8127 | 47-50 | CC | denotes | and |
| T8128 | 51-60 | VBD | denotes | confirmed |
| T8129 | 61-65 | IN | denotes | that |
| T8130 | 66-76 | JJ | denotes | endogenous |
| T8131 | 77-81 | NN | denotes | RPS3 |
| T8132 | 82-85 | VBD | denotes | was |
| T8133 | 86-100 | VBN | denotes | phosphorylated |
| T8134 | 101-103 | IN | denotes | at |
| T8135 | 104-108 | CD | denotes | S209 |
| T8136 | 109-111 | IN | denotes | in |
| T8137 | 112-113 | DT | denotes | a |
| T8138 | 114-128 | JJ | denotes | time-dependent |
| T8139 | 129-135 | NN | denotes | manner |
| T8140 | 136-140 | IN | denotes | upon |
| T8141 | 141-144 | NNP | denotes | TNF |
| T8142 | 145-156 | NN | denotes | stimulation |
| T8143 | 157-158 | -LRB- | denotes | ( |
| T8144 | 158-162 | NNP | denotes | Fig. |
| T8145 | 163-165 | CD | denotes | 4e |
| T8146 | 165-166 | -RRB- | denotes | ) |
| T8147 | 166-167 | . | denotes | . |
| R6574 | T8120 | T8122 | nsubj | We,generated |
| R6575 | T8121 | T8122 | advmod | next,generated |
| R6576 | T8122 | T8122 | ROOT | generated,generated |
| R6577 | T8123 | T8126 | det | a,antibody |
| R6578 | T8124 | T8126 | amod | phospho-S209,antibody |
| R6579 | T8125 | T8126 | compound | RPS3,antibody |
| R6580 | T8126 | T8122 | dobj | antibody,generated |
| R6581 | T8127 | T8122 | cc | and,generated |
| R6582 | T8128 | T8122 | conj | confirmed,generated |
| R6583 | T8129 | T8133 | mark | that,phosphorylated |
| R6584 | T8130 | T8131 | amod | endogenous,RPS3 |
| R6585 | T8131 | T8133 | nsubjpass | RPS3,phosphorylated |
| R6586 | T8132 | T8133 | auxpass | was,phosphorylated |
| R6587 | T8133 | T8128 | ccomp | phosphorylated,confirmed |
| R6588 | T8134 | T8133 | prep | at,phosphorylated |
| R6589 | T8135 | T8134 | pobj | S209,at |
| R6590 | T8136 | T8133 | prep | in,phosphorylated |
| R6591 | T8137 | T8139 | det | a,manner |
| R6592 | T8138 | T8139 | amod | time-dependent,manner |
| R6593 | T8139 | T8136 | pobj | manner,in |
| R6594 | T8140 | T8139 | prep | upon,manner |
| R6595 | T8141 | T8142 | compound | TNF,stimulation |
| R6596 | T8142 | T8140 | pobj | stimulation,upon |
| R6597 | T8143 | T8133 | punct | (,phosphorylated |
| R6598 | T8144 | T8133 | dep | Fig.,phosphorylated |
| R6599 | T8145 | T8144 | nummod | 4e,Fig. |
| R6600 | T8146 | T8133 | punct | ),phosphorylated |
| R6601 | T8147 | T8122 | punct | .,generated |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8286 | 38-46 | http://purl.obolibrary.org/obo/GO_0003823 | denotes | antibody |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8289 | 38-46 | http://purl.obolibrary.org/obo/GO_0019815 | denotes | antibody |
| T8290 | 38-46 | http://purl.obolibrary.org/obo/GO_0042571 | denotes | antibody |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7157 | 0-167 | Sentence | denotes | We next generated a phospho-S209 RPS3 antibody and confirmed that endogenous RPS3 was phosphorylated at S209 in a time-dependent manner upon TNF stimulation (Fig. 4e). |
| T84 | 0-167 | Sentence | denotes | We next generated a phospho-S209 RPS3 antibody and confirmed that endogenous RPS3 was phosphorylated at S209 in a time-dependent manner upon TNF stimulation (Fig. 4e). |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8614 | 20-46 | Protein | denotes | phospho-S209 RPS3 antibody |
| T8615 | 77-81 | Protein | denotes | RPS3 |
| T8616 | 86-100 | Phosphorylation | denotes | phosphorylated |
| T8617 | 104-108 | Entity | denotes | S209 |
| T8618 | 119-128 | Regulation | denotes | dependent |
| T8619 | 136-140 | Positive_regulation | denotes | upon |
| R6878 | T8616 | T8618 | themeOf | phosphorylated,dependent |
| R6879 | T8617 | T8616 | themeOf | S209,phosphorylated |
| R6880 | T8617 | T8615 | partOf | S209,RPS3 |
| R6881 | T8618 | T8619 | themeOf | dependent,upon |
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7134 | 20-46 | Protein | denotes | phospho-S209 RPS3 antibody |
| T7135 | 77-81 | Protein | denotes | RPS3 |
| T7136 | 86-100 | Phosphorylation | denotes | phosphorylated |
| T7137 | 104-108 | Entity | denotes | S209 |
| T7138 | 119-128 | Regulation | denotes | dependent |
| T7139 | 136-140 | Positive_regulation | denotes | upon |
| R5646 | T7136 | T7138 | themeOf | phosphorylated,dependent |
| R5647 | T7137 | T7136 | themeOf | S209,phosphorylated |
| R5648 | T7137 | T7135 | partOf | S209,RPS3 |
| R5649 | T7138 | T7139 | themeOf | dependent,upon |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7043 | 20-46 | Protein | denotes | phospho-S209 RPS3 antibody |
| T7044 | 77-81 | Protein | denotes | RPS3 |
| T7045 | 86-100 | Phosphorylation | denotes | phosphorylated |
| T7046 | 104-108 | Entity | denotes | S209 |
| T7047 | 119-128 | Regulation | denotes | dependent |
| R5585 | T7045 | T7047 | themeOf | phosphorylated,dependent |
| R5586 | T7046 | T7045 | themeOf | S209,phosphorylated |
| R5587 | T7046 | T7044 | partOf | S209,RPS3 |