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PMC:3062687 / 0-286 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T239 0-4 O14920 denotes IKKβ
T240 31-35 P23396 denotes RPS3
T241 208-212 P23396 denotes RPS3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T100 0-4 NN denotes IKKβ
T101 5-20 NN denotes phosphorylation
T102 21-30 VB denotes regulates
T103 31-35 NN denotes RPS3
T104 36-43 JJ denotes nuclear
T105 44-57 NN denotes translocation
T106 58-61 CC denotes and
T107 62-67 NN denotes NF-κB
T108 68-76 NN denotes function
T109 77-95 NN denotes during Escherichia
T110 96-105 NN denotes coli O157
T111 105-106 -COLON- denotes :
T112 106-108 NN denotes H7
T113 109-118 NN denotes infection
T114 130-135 NN denotes NF-κB
T115 136-138 VB denotes is
T116 139-140 DT denotes a
T117 141-146 JJ denotes major
T118 147-151 NN denotes gene
T119 152-161 NN denotes regulator
T120 162-164 IN denotes in
T121 165-171 JJ denotes immune
T122 172-181 NN denotes responses
T123 182-185 CC denotes and
T124 186-195 JJ denotes ribosomal
T125 196-203 NN denotes protein
T126 204-206 NN denotes S3
T127 207-208 -LRB- denotes (
T128 208-212 NN denotes RPS3
T129 212-213 -RRB- denotes )
T130 214-216 VB denotes is
T131 217-219 DT denotes an
T132 220-225 NN denotes NF-κB
T133 226-233 NN denotes subunit
T134 234-238 WDT denotes that
T135 239-246 VB denotes directs
T136 247-255 JJ denotes specific
T137 256-260 NN denotes gene
T138 261-274 NN denotes transcription
T139 276-283 RB denotes However
T140 283-284 -COMMA- denotes ,
R78 T100 T102 modOf IKKβ,regulates
R79 T100 T111 arg1Of IKKβ,:
R80 T101 T102 arg1Of phosphorylation,regulates
R81 T105 T103 arg1Of translocation,RPS3
R82 T105 T104 arg1Of translocation,nuclear
R83 T105 T106 arg1Of translocation,and
R84 T106 T102 arg2Of and,regulates
R85 T110 T106 arg2Of coli O157,and
R86 T110 T107 arg1Of coli O157,NF-κB
R87 T110 T108 arg1Of coli O157,function
R88 T110 T109 arg1Of coli O157,during Escherichia
R89 T113 T100 arg1Of infection,IKKβ
R90 T113 T112 arg1Of infection,H7
R91 T114 T115 arg1Of NF-κB,is
R92 T115 T123 arg1Of is,and
R93 T119 T115 arg2Of regulator,is
R94 T119 T116 arg1Of regulator,a
R95 T119 T117 arg1Of regulator,major
R96 T119 T118 arg1Of regulator,gene
R97 T119 T120 arg1Of regulator,in
R98 T122 T120 arg2Of responses,in
R99 T122 T121 arg1Of responses,immune
R100 T126 T124 arg1Of S3,ribosomal
R101 T126 T125 arg1Of S3,protein
R102 T126 T127 arg1Of S3,(
R103 T126 T130 arg1Of S3,is
R104 T128 T127 arg2Of RPS3,(
R105 T129 T127 arg3Of ),(
R106 T130 T123 arg2Of is,and
R107 T133 T130 arg2Of subunit,is
R108 T133 T131 arg1Of subunit,an
R109 T133 T132 arg1Of subunit,NF-κB
R110 T133 T134 arg1Of subunit,that
R111 T133 T135 arg1Of subunit,directs
R112 T138 T135 arg2Of transcription,directs
R113 T138 T136 arg1Of transcription,specific
R114 T138 T137 arg1Of transcription,gene

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T284 234-238 WDT denotes that
T285 239-246 VBZ denotes directs
T286 247-255 JJ denotes specific
T287 256-260 NN denotes gene
T288 261-274 NN denotes transcription
T289 274-275 . denotes .
T290 276-283 RB denotes However
T291 283-284 , denotes ,
T250 0-4 NNP denotes IKKβ
T251 5-20 NN denotes phosphorylation
T252 21-30 VBZ denotes regulates
T253 31-35 CD denotes RPS3
T254 36-43 JJ denotes nuclear
T255 44-57 NN denotes translocation
T256 58-61 CC denotes and
T257 62-67 JJ denotes NF-κB
T258 68-76 NN denotes function
T259 77-95 NNP denotes during Escherichia
T260 96-105 NNP denotes coli O157
T261 105-106 : denotes :
T262 106-108 NNP denotes H7
T263 109-118 NN denotes infection
T264 130-135 NN denotes NF-κB
T265 136-138 VBZ denotes is
T266 139-140 DT denotes a
T267 141-146 JJ denotes major
T268 147-151 NN denotes gene
T269 152-161 NN denotes regulator
T270 162-164 IN denotes in
T271 165-171 JJ denotes immune
T272 172-181 NNS denotes responses
T273 182-185 CC denotes and
T274 186-195 JJ denotes ribosomal
T275 196-203 NN denotes protein
T276 204-206 NNP denotes S3
T277 207-208 -LRB- denotes (
T278 208-212 NNP denotes RPS3
T279 212-213 -RRB- denotes )
T280 214-216 VBZ denotes is
T281 217-219 DT denotes an
T282 220-225 JJ denotes NF-κB
T283 226-233 NN denotes subunit
R506 T263 T264 compound infection,NF-κB
R507 T264 T265 nsubj NF-κB,is
R508 T265 T265 ROOT is,is
R509 T266 T269 det a,regulator
R510 T267 T269 amod major,regulator
R511 T268 T269 compound gene,regulator
R512 T269 T265 attr regulator,is
R513 T270 T269 prep in,regulator
R514 T271 T272 amod immune,responses
R515 T272 T270 pobj responses,in
R516 T273 T272 cc and,responses
R517 T274 T276 amod ribosomal,S3
R518 T275 T276 compound protein,S3
R519 T276 T269 appos S3,regulator
R520 T277 T278 punct (,RPS3
R521 T278 T276 appos RPS3,S3
R522 T279 T276 punct ),S3
R523 T280 T265 conj is,is
R524 T281 T283 det an,subunit
R525 T282 T283 amod NF-κB,subunit
R526 T283 T280 attr subunit,is
R223 T289 T265 punct .,is
R493 T250 T251 compound IKKβ,phosphorylation
R494 T251 T252 nsubj phosphorylation,regulates
R495 T252 T252 ROOT regulates,regulates
R496 T253 T255 nummod RPS3,translocation
R497 T254 T255 amod nuclear,translocation
R498 T255 T258 nmod translocation,function
R499 T256 T255 cc and,translocation
R500 T257 T258 compound NF-κB,function
R501 T258 T252 dobj function,regulates
R502 T259 T260 compound during Escherichia,coli O157
R503 T260 T252 npadvmod coli O157,regulates
R504 T261 T260 punct :,coli O157
R505 T262 T264 compound H7,NF-κB
R218 T284 T285 nsubj that,directs
R219 T285 T283 relcl directs,subunit
R220 T286 T288 amod specific,transcription
R221 T287 T288 compound gene,transcription
R222 T288 T285 dobj transcription,directs

GO-BP

Id Subject Object Predicate Lexical cue
T432 5-20 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T435 165-181 http://purl.obolibrary.org/obo/GO_0006955 denotes immune responses
T436 261-274 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T440 186-203 http://purl.obolibrary.org/obo/GO_0003735 denotes ribosomal protein

sentences

Id Subject Object Predicate Lexical cue
T94 0-118 Sentence denotes IKKβ phosphorylation regulates RPS3 nuclear translocation and NF-κB function during Escherichia coli O157:H7 infection
T95 130-275 Sentence denotes NF-κB is a major gene regulator in immune responses and ribosomal protein S3 (RPS3) is an NF-κB subunit that directs specific gene transcription.
T1 0-118 Sentence denotes IKKβ phosphorylation regulates RPS3 nuclear translocation and NF-κB function during Escherichia coli O157:H7 infection
T2 121-129 Sentence denotes Abstract
T3 130-275 Sentence denotes NF-κB is a major gene regulator in immune responses and ribosomal protein S3 (RPS3) is an NF-κB subunit that directs specific gene transcription.

events-check-again

Id Subject Object Predicate Lexical cue
T562 0-4 Protein denotes IKKβ
T563 5-20 Phosphorylation denotes phosphorylation
T564 21-30 Regulation denotes regulates
T565 31-35 Protein denotes RPS3
T566 36-43 Entity denotes nuclear
T567 44-57 Localization denotes translocation
T568 186-206 Protein denotes ribosomal protein S3
T569 208-212 Protein denotes RPS3
R439 T562 T563 themeOf IKKβ,phosphorylation
R440 T563 T564 causeOf phosphorylation,regulates
R441 T565 T567 themeOf RPS3,translocation
R442 T566 T567 locationOf nuclear,translocation
R443 T567 T564 themeOf translocation,regulates
R444 T569 T568 equivalentTo RPS3,ribosomal protein S3

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T499 0-4 Protein denotes IKKβ
T500 31-35 Protein denotes RPS3
T501 62-67 Protein denotes NF-κB
T502 5-20 Phosphorylation denotes phosphorylation
T503 36-43 Entity denotes nuclear
T504 44-57 Localization denotes translocation
T505 21-30 Regulation denotes regulates
T506 130-135 Protein denotes NF-κB
T507 186-206 Protein denotes ribosomal protein S3
T508 208-212 Protein denotes RPS3
T509 220-225 Protein denotes NF-κB
R395 T499 T502 themeOf IKKβ,phosphorylation
R396 T500 T504 themeOf RPS3,translocation
R397 T502 T505 causeOf phosphorylation,regulates
R398 T503 T504 locationOf nuclear,translocation
R399 T504 T505 themeOf translocation,regulates

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T62 0-4 Protein denotes IKKβ
T63 5-20 Phosphorylation denotes phosphorylation
T64 21-30 Regulation denotes regulates
T65 31-35 Protein denotes RPS3
T66 36-43 Entity denotes nuclear
T67 44-57 Localization denotes translocation
T68 186-206 Protein denotes ribosomal protein S3
T69 208-212 Protein denotes RPS3
R51 T62 T63 themeOf IKKβ,phosphorylation
R52 T63 T64 causeOf phosphorylation,regulates
R53 T65 T67 themeOf RPS3,translocation
R54 T66 T67 locationOf nuclear,translocation
R55 T67 T64 themeOf translocation,regulates
R56 T69 T68 equivalentTo RPS3,ribosomal protein S3

test2

Id Subject Object Predicate Lexical cue Speculation
T33 0-4 Protein denotes IKKβ
T34 5-20 Phosphorylation denotes phosphorylation
T35 21-30 Regulation denotes regulates
T36 31-35 Protein denotes RPS3
T37 36-43 Entity denotes nuclear true
T38 44-57 Localization denotes translocation
T39 186-206 Protein denotes ribosomal protein S3
T40 208-212 Protein denotes RPS3
R28 T33 T34 themeOf IKKβ,phosphorylation
R29 T34 T35 causeOf phosphorylation,regulates
R30 T36 T38 themeOf RPS3,translocation
R31 T37 T38 locationOf nuclear,translocation
R32 T38 T35 themeOf translocation,regulates
R33 T40 T39 equivalentTo RPS3,ribosomal protein S3