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PMC:2889865 / 9922-10429 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T15704 10-15 NN denotes CXCL8
T15705 15-16 -COMMA- denotes ,
T15706 17-21 NN denotes IL-6
T15707 22-25 CC denotes and
T15708 26-29 NN denotes TNF
T15709 30-40 NN denotes expression
T15710 41-50 VB denotes following
T15711 51-60 JJ denotes long-term
T15712 61-72 NN denotes stimulation
T15713 73-77 IN denotes with
T15714 78-81 NN denotes PMA
T15715 83-89 NN denotes Jurkat
T15716 90-97 NN denotes T-cells
T15717 98-102 VB denotes were
T15718 103-109 RB denotes either
T15719 110-117 VB denotes treated
T15720 118-122 IN denotes with
T15721 123-128 NN denotes media
T15722 129-130 -LRB- denotes (
T15723 130-135 JJ denotes white
T15724 136-140 NN denotes bars
T15725 140-141 -RRB- denotes )
T15726 142-144 CC denotes or
T15727 145-155 VB denotes stimulated
T15728 156-160 IN denotes with
T15729 161-164 NN denotes PMA
T15730 165-166 -LRB- denotes (
T15731 166-171 JJ denotes black
T15732 172-176 NN denotes bars
T15733 176-177 -RRB- denotes )
T15734 178-181 CC denotes and
T15735 182-191 VB denotes incubated
T15736 192-195 IN denotes for
T15737 196-197 CD denotes 1
T15738 198-199 NN denotes h
T15739 199-200 -COMMA- denotes ,
T15740 201-202 CD denotes 2
T15741 203-204 NN denotes h
T15742 204-205 -COMMA- denotes ,
T15743 206-207 CD denotes 6
T15744 208-209 NN denotes h
T15745 210-213 CC denotes and
T15746 214-216 CD denotes 24
T15747 217-218 NN denotes h
T15748 220-224 JJ denotes Aged
T15749 225-230 NN denotes media
T15750 231-234 VB denotes was
T15751 235-240 VB denotes added
T15752 241-250 VB denotes following
T15753 251-255 DT denotes each
T15754 256-270 NN denotes centrifugation
T15755 271-275 NN denotes step
T15756 276-290 JJ denotes representative
T15757 291-293 TO denotes to
T15758 294-297 DT denotes the
T15759 298-309 NN denotes stimulation
T15760 310-314 NN denotes time
T15761 315-316 -LRB- denotes (
T15762 316-319 VB denotes see
T15763 320-329 NNP denotes Materials
T15764 330-333 CC denotes and
T15765 334-341 NN denotes methods
T15766 341-342 -RRB- denotes )
T15767 344-352 NN denotes Cytokine
T15768 353-359 NN denotes levels
T15769 360-361 -LRB- denotes (
T15770 361-362 NN denotes A
T15771 362-363 -RRB- denotes )
T15772 364-369 NN denotes CXCL8
T15773 369-370 -COMMA- denotes ,
T15774 371-372 -LRB- denotes (
T15775 372-373 NN denotes B
T15776 373-374 -RRB- denotes )
T15777 375-379 NN denotes IL-6
T15778 380-383 CC denotes and
T15779 384-385 -LRB- denotes (
T15780 385-386 NN denotes C
T15781 386-387 -RRB- denotes )
T15782 388-391 NN denotes TNF
T15783 392-396 VB denotes were
T15784 397-405 VB denotes detected
T15785 406-408 IN denotes by
T15786 409-414 NN denotes ELISA
T15787 416-427 JJ denotes Statistical
T15788 428-440 NN denotes significance
T15789 441-445 IN denotes from
T15790 446-449 DT denotes the
T15791 450-457 NN denotes control
T15792 458-461 VB denotes was
T15793 462-472 VB denotes determined
T15794 473-478 VB denotes using
T15795 479-486 NN denotes Student
T15796 486-488 POS denotes 's
T15797 489-496 NN denotes t-test.
T15798 497-498 -LRB- denotes (
T15799 498-499 NN denotes n
T15800 500-501 SYM denotes =
T15801 502-503 CD denotes 3
T15802 503-504 -RRB- denotes )
R12762 T15704 T15705 arg1Of CXCL8,","
R12763 T15705 T15707 arg1Of ",",and
R12764 T15706 T15705 arg2Of IL-6,","
R12765 T15708 T15707 arg2Of TNF,and
R12766 T15709 T15704 arg1Of expression,CXCL8
R12767 T15709 T15706 arg1Of expression,IL-6
R12768 T15709 T15708 arg1Of expression,TNF
R12769 T15709 T15710 arg1Of expression,following
R12770 T15712 T15710 arg2Of stimulation,following
R12771 T15712 T15711 arg1Of stimulation,long-term
R12772 T15712 T15713 arg1Of stimulation,with
R12773 T15714 T15713 arg2Of PMA,with
R12774 T15716 T15715 arg1Of T-cells,Jurkat
R12775 T15716 T15717 arg1Of T-cells,were
R12776 T15716 T15719 arg2Of T-cells,treated
R12777 T15716 T15727 arg2Of T-cells,stimulated
R12778 T15716 T15735 arg2Of T-cells,incubated
R12779 T15719 T15720 arg1Of treated,with
R12780 T15719 T15726 arg1Of treated,or
R12781 T15721 T15720 arg2Of media,with
R12782 T15721 T15722 arg1Of media,(
R12783 T15724 T15722 arg2Of bars,(
R12784 T15724 T15723 arg1Of bars,white
R12785 T15725 T15722 arg3Of ),(
R12786 T15726 T15734 arg1Of or,and
R12787 T15727 T15726 arg2Of stimulated,or
R12788 T15727 T15728 arg1Of stimulated,with
R12789 T15729 T15728 arg2Of PMA,with
R12790 T15729 T15730 arg1Of PMA,(
R12791 T15732 T15730 arg2Of bars,(
R12792 T15732 T15731 arg1Of bars,black
R12793 T15733 T15730 arg3Of ),(
R12794 T15734 T15717 arg2Of and,were
R12795 T15734 T15718 arg1Of and,either
R12796 T15735 T15734 arg2Of incubated,and
R12797 T15735 T15736 arg1Of incubated,for
R12798 T15738 T15737 arg1Of h,1
R12799 T15738 T15739 arg1Of h,","
R12800 T15739 T15742 arg1Of ",",","
R12801 T15741 T15739 arg2Of h,","
R12802 T15741 T15740 arg1Of h,2
R12803 T15742 T15745 arg1Of ",",and
R12804 T15744 T15742 arg2Of h,","
R12805 T15744 T15743 arg1Of h,6
R12806 T15745 T15736 arg2Of and,for
R12807 T15747 T15745 arg2Of h,and
R12808 T15747 T15746 arg1Of h,24
R12809 T15749 T15748 arg1Of media,Aged
R12810 T15749 T15750 arg1Of media,was
R12811 T15749 T15751 arg2Of media,added
R12812 T15751 T15750 arg2Of added,was
R12813 T15751 T15752 arg1Of added,following
R12814 T15751 T15761 arg1Of added,(
R12815 T15755 T15752 arg2Of step,following
R12816 T15755 T15753 arg1Of step,each
R12817 T15755 T15754 arg1Of step,centrifugation
R12818 T15755 T15756 arg1Of step,representative
R12819 T15756 T15757 arg1Of representative,to
R12820 T15760 T15757 arg2Of time,to
R12821 T15760 T15758 arg1Of time,the
R12822 T15760 T15759 arg1Of time,stimulation
R12823 T15762 T15761 arg2Of see,(
R12824 T15763 T15764 arg1Of Materials,and
R12825 T15764 T15762 arg2Of and,see
R12826 T15765 T15764 arg2Of methods,and
R12827 T15766 T15761 arg3Of ),(
R12828 T15768 T15767 arg1Of levels,Cytokine
R12829 T15768 T15769 arg1Of levels,(
R12830 T15770 T15769 arg2Of A,(
R12831 T15771 T15769 arg3Of ),(
R12832 T15772 T15768 arg1Of CXCL8,levels
R12833 T15772 T15773 arg1Of CXCL8,","
R12834 T15773 T15778 arg1Of ",",and
R12835 T15775 T15774 arg2Of B,(
R12836 T15776 T15774 arg3Of ),(
R12837 T15777 T15773 arg2Of IL-6,","
R12838 T15777 T15774 arg1Of IL-6,(
R12839 T15778 T15783 arg1Of and,were
R12840 T15778 T15784 arg2Of and,detected
R12841 T15780 T15779 arg2Of C,(
R12842 T15781 T15779 arg3Of ),(
R12843 T15782 T15778 arg2Of TNF,and
R12844 T15782 T15779 arg1Of TNF,(
R12845 T15784 T15783 arg2Of detected,were
R12846 T15786 T15784 arg1Of ELISA,detected
R12847 T15786 T15785 arg2Of ELISA,by
R12848 T15788 T15787 arg1Of significance,Statistical
R12849 T15788 T15789 arg1Of significance,from
R12850 T15788 T15792 arg1Of significance,was
R12851 T15788 T15793 arg2Of significance,determined
R12852 T15791 T15789 arg2Of control,from
R12853 T15791 T15790 arg1Of control,the
R12854 T15793 T15792 arg2Of determined,was
R12855 T15794 T15793 arg3Of using,determined
R12856 T15795 T15796 arg2Of Student,'s
R12857 T15797 T15794 arg2Of t-test.,using
R12858 T15797 T15796 arg1Of t-test.,'s
R12859 T15797 T15798 arg1Of t-test.,(
R12860 T15799 T15798 arg2Of n,(
R12861 T15799 T15800 arg1Of n,=
R12862 T15799 T15801 arg1Of n,3
R12863 T15802 T15798 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T15600 10-15 CD denotes CXCL8
T15601 15-16 , denotes ,
T15602 17-21 NNP denotes IL-6
T15603 22-25 CC denotes and
T15604 26-29 NNP denotes TNF
T15605 30-40 NN denotes expression
T15606 41-50 VBG denotes following
T15607 51-60 JJ denotes long-term
T15608 61-72 NN denotes stimulation
T15609 73-77 IN denotes with
T15610 78-81 NNP denotes PMA
T15611 81-82 . denotes .
T15612 83-89 NNP denotes Jurkat
T15613 90-97 NNS denotes T-cells
T15614 98-102 VBD denotes were
T15615 103-109 RB denotes either
T15616 110-117 VBN denotes treated
T15617 118-122 IN denotes with
T15618 123-128 NNS denotes media
T15619 129-130 -LRB- denotes (
T15620 130-135 JJ denotes white
T15621 136-140 NNS denotes bars
T15622 140-141 -RRB- denotes )
T15623 142-144 CC denotes or
T15624 145-155 VBN denotes stimulated
T15625 156-160 IN denotes with
T15626 161-164 NNP denotes PMA
T15627 165-166 -LRB- denotes (
T15628 166-171 JJ denotes black
T15629 172-176 NNS denotes bars
T15630 176-177 -RRB- denotes )
T15631 178-181 CC denotes and
T15632 182-191 VBN denotes incubated
T15633 192-195 IN denotes for
T15634 196-197 CD denotes 1
T15635 198-199 NN denotes h
T15636 199-200 , denotes ,
T15637 201-202 CD denotes 2
T15638 203-204 NN denotes h
T15639 204-205 , denotes ,
T15640 206-207 CD denotes 6
T15641 208-209 NN denotes h
T15642 210-213 CC denotes and
T15643 214-216 CD denotes 24
T15644 217-219 NN denotes h.
T15645 220-224 VBN denotes Aged
T15646 225-230 NNS denotes media
T15647 231-234 VBD denotes was
T15648 235-240 VBN denotes added
T15649 241-250 VBG denotes following
T15650 251-255 DT denotes each
T15651 256-270 NN denotes centrifugation
T15652 271-275 NN denotes step
T15653 276-290 NN denotes representative
T15654 291-293 TO denotes to
T15655 294-297 DT denotes the
T15656 298-309 NN denotes stimulation
T15657 310-314 NN denotes time
T15658 315-316 -LRB- denotes (
T15659 316-319 VB denotes see
T15660 320-329 NNPS denotes Materials
T15661 330-333 CC denotes and
T15662 334-341 NNS denotes methods
T15663 341-342 -RRB- denotes )
T15664 342-343 . denotes .
T15665 344-352 NNP denotes Cytokine
T15666 353-359 NNS denotes levels
T15667 360-361 -LRB- denotes (
T15668 361-362 NNP denotes A
T15669 362-363 -RRB- denotes )
T15670 364-369 NNP denotes CXCL8
T15671 369-370 , denotes ,
T15672 371-372 -LRB- denotes (
T15673 372-373 NNP denotes B
T15674 373-374 -RRB- denotes )
T15675 375-379 NNP denotes IL-6
T15676 380-383 CC denotes and
T15677 384-385 -LRB- denotes (
T15678 385-386 NNP denotes C
T15679 386-387 -RRB- denotes )
T15680 388-391 NNP denotes TNF
T15681 392-396 VBD denotes were
T15682 397-405 VBN denotes detected
T15683 406-408 IN denotes by
T15684 409-414 NNP denotes ELISA
T15685 414-415 . denotes .
T15686 416-427 NNP denotes Statistical
T15687 428-440 NN denotes significance
T15688 441-445 IN denotes from
T15689 446-449 DT denotes the
T15690 450-457 NN denotes control
T15691 458-461 VBD denotes was
T15692 462-472 VBN denotes determined
T15693 473-478 VBG denotes using
T15694 479-486 NN denotes Student
T15695 486-488 POS denotes 's
T15696 489-495 JJS denotes t-test
T15697 495-496 . denotes .
T15698 497-498 -LRB- denotes (
T15699 498-499 FW denotes n
T15700 500-501 SYM denotes =
T15701 502-503 LS denotes 3
T15702 503-504 -RRB- denotes )
T15703 504-505 . denotes .
R12658 T15600 T15600 ROOT CXCL8,CXCL8
R12659 T15601 T15600 punct ",",CXCL8
R12660 T15602 T15606 nsubj IL-6,following
R12661 T15603 T15602 cc and,IL-6
R12662 T15604 T15605 compound TNF,expression
R12663 T15605 T15602 conj expression,IL-6
R12664 T15606 T15600 prep following,CXCL8
R12665 T15607 T15608 amod long-term,stimulation
R12666 T15608 T15606 pobj stimulation,following
R12667 T15609 T15608 prep with,stimulation
R12668 T15610 T15609 pobj PMA,with
R12669 T15611 T15606 punct .,following
R12670 T15612 T15613 compound Jurkat,T-cells
R12671 T15613 T15616 nsubjpass T-cells,treated
R12672 T15614 T15616 auxpass were,treated
R12673 T15615 T15616 preconj either,treated
R12674 T15616 T15616 ROOT treated,treated
R12675 T15617 T15616 prep with,treated
R12676 T15618 T15617 pobj media,with
R12677 T15619 T15618 punct (,media
R12678 T15620 T15621 amod white,bars
R12679 T15621 T15618 appos bars,media
R12680 T15622 T15616 punct ),treated
R12681 T15623 T15616 cc or,treated
R12682 T15624 T15616 conj stimulated,treated
R12683 T15625 T15624 prep with,stimulated
R12684 T15626 T15625 pobj PMA,with
R12685 T15627 T15626 punct (,PMA
R12686 T15628 T15629 amod black,bars
R12687 T15629 T15626 appos bars,PMA
R12688 T15630 T15629 punct ),bars
R12689 T15631 T15624 cc and,stimulated
R12690 T15632 T15624 conj incubated,stimulated
R12691 T15633 T15632 prep for,incubated
R12692 T15634 T15635 nummod 1,h
R12693 T15635 T15633 pobj h,for
R12694 T15636 T15635 punct ",",h
R12695 T15637 T15638 nummod 2,h
R12696 T15638 T15635 appos h,h
R12697 T15639 T15638 punct ",",h
R12698 T15640 T15641 nummod 6,h
R12699 T15641 T15638 conj h,h
R12700 T15642 T15641 cc and,h
R12701 T15643 T15644 nummod 24,h.
R12702 T15644 T15646 amod h.,media
R12703 T15645 T15646 amod Aged,media
R12704 T15646 T15641 conj media,h
R12705 T15647 T15648 auxpass was,added
R12706 T15648 T15616 conj added,treated
R12707 T15649 T15648 prep following,added
R12708 T15650 T15653 det each,representative
R12709 T15651 T15653 amod centrifugation,representative
R12710 T15652 T15653 compound step,representative
R12711 T15653 T15649 pobj representative,following
R12712 T15654 T15653 prep to,representative
R12713 T15655 T15657 det the,time
R12714 T15656 T15657 compound stimulation,time
R12715 T15657 T15654 pobj time,to
R12716 T15658 T15659 punct (,see
R12717 T15659 T15653 parataxis see,representative
R12718 T15660 T15659 dobj Materials,see
R12719 T15661 T15660 cc and,Materials
R12720 T15662 T15660 conj methods,Materials
R12721 T15663 T15659 punct ),see
R12722 T15664 T15648 punct .,added
R12723 T15665 T15666 amod Cytokine,levels
R12724 T15666 T15682 nsubjpass levels,detected
R12725 T15667 T15666 punct (,levels
R12726 T15668 T15682 nsubjpass A,detected
R12727 T15669 T15670 punct ),CXCL8
R12728 T15670 T15668 pobj CXCL8,A
R12729 T15671 T15670 punct ",",CXCL8
R12730 T15672 T15673 punct (,B
R12731 T15673 T15670 appos B,CXCL8
R12732 T15674 T15670 punct ),CXCL8
R12733 T15675 T15670 conj IL-6,CXCL8
R12734 T15676 T15675 cc and,IL-6
R12735 T15677 T15678 punct (,C
R12736 T15678 T15675 conj C,IL-6
R12737 T15679 T15678 punct ),C
R12738 T15680 T15675 conj TNF,IL-6
R12739 T15681 T15682 auxpass were,detected
R12740 T15682 T15682 ROOT detected,detected
R12741 T15683 T15682 agent by,detected
R12742 T15684 T15683 pobj ELISA,by
R12743 T15685 T15682 punct .,detected
R12744 T15686 T15687 compound Statistical,significance
R12745 T15687 T15692 nsubjpass significance,determined
R12746 T15688 T15687 prep from,significance
R12747 T15689 T15690 det the,control
R12748 T15690 T15688 pobj control,from
R12749 T15691 T15692 auxpass was,determined
R12750 T15692 T15692 ROOT determined,determined
R12751 T15693 T15692 advcl using,determined
R12752 T15694 T15696 poss Student,t-test
R12753 T15695 T15694 case 's,Student
R12754 T15696 T15693 dobj t-test,using
R12755 T15697 T15692 punct .,determined
R12756 T15698 T15701 punct (,3
R12757 T15699 T15701 advmod n,3
R12758 T15700 T15701 punct =,3
R12759 T15701 T15701 ROOT 3,3
R12760 T15702 T15701 punct ),3
R12761 T15703 T15701 punct .,3

GO-MF

Id Subject Object Predicate Lexical cue
T15814 17-21 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T15815 375-379 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T15816 92-97 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T15595 10-82 Sentence denotes CXCL8, IL-6 and TNF expression following long-term stimulation with PMA.
T15596 83-219 Sentence denotes Jurkat T-cells were either treated with media (white bars) or stimulated with PMA (black bars) and incubated for 1 h, 2 h, 6 h and 24 h.
T15597 220-343 Sentence denotes Aged media was added following each centrifugation step representative to the stimulation time (see Materials and methods).
T15598 344-415 Sentence denotes Cytokine levels (A) CXCL8, (B) IL-6 and (C) TNF were detected by ELISA.
T15599 416-505 Sentence denotes Statistical significance from the control was determined using Student's t-test. (n = 3).
T72 0-82 Sentence denotes Figure 3 CXCL8, IL-6 and TNF expression following long-term stimulation with PMA.
T73 83-219 Sentence denotes Jurkat T-cells were either treated with media (white bars) or stimulated with PMA (black bars) and incubated for 1 h, 2 h, 6 h and 24 h.
T74 220-343 Sentence denotes Aged media was added following each centrifugation step representative to the stimulation time (see Materials and methods).
T75 344-415 Sentence denotes Cytokine levels (A) CXCL8, (B) IL-6 and (C) TNF were detected by ELISA.
T76 416-505 Sentence denotes Statistical significance from the control was determined using Student's t-test. (n = 3).

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T15853 10-15 Protein denotes CXCL8
T15854 17-21 Protein denotes IL-6
T15855 30-40 Gene_expression denotes expression
T15856 30-40 Gene_expression denotes expression
T15857 41-50 Positive_regulation denotes following true
T15858 41-50 Positive_regulation denotes following true
T15859 364-369 Protein denotes CXCL8
T15860 375-379 Protein denotes IL-6
R12882 T15853 T15856 themeOf CXCL8,expression
R12883 T15854 T15855 themeOf IL-6,expression
R12884 T15855 T15857 themeOf expression,following
R12885 T15856 T15858 themeOf expression,following

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T15861 10-15 Protein denotes CXCL8
T15862 17-21 Protein denotes IL-6
T15863 26-29 Protein denotes TNF
T15864 30-40 Gene_expression denotes expression
T15865 30-40 Gene_expression denotes expression
T15866 30-40 Gene_expression denotes expression
T15867 364-369 Protein denotes CXCL8
R12886 T15861 T15864 themeOf CXCL8,expression
R12887 T15862 T15865 themeOf IL-6,expression
R12888 T15863 T15866 themeOf TNF,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T15587 10-15 Protein denotes CXCL8
T15588 17-21 Protein denotes IL-6
T15589 30-40 Gene_expression denotes expression
T15590 30-40 Gene_expression denotes expression
T15591 41-50 Positive_regulation denotes following true
T15592 41-50 Positive_regulation denotes following true
T15593 364-369 Protein denotes CXCL8
T15594 375-379 Protein denotes IL-6
R12654 T15587 T15590 themeOf CXCL8,expression
R12655 T15588 T15589 themeOf IL-6,expression
R12656 T15589 T15591 themeOf expression,following
R12657 T15590 T15592 themeOf expression,following

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15803 10-15 P10145 denotes CXCL8
T15804 17-21 P05231 denotes IL-6
T15805 26-29 P01375 denotes TNF
T15806 364-369 P10145 denotes CXCL8
T15807 375-379 P05231 denotes IL-6
T15808 388-391 P01375 denotes TNF

test2

Id Subject Object Predicate Lexical cue Speculation
T15581 10-15 Protein denotes CXCL8
T15582 17-21 Protein denotes IL-6
T15583 30-40 Gene_expression denotes expression true
T15584 41-50 Positive_regulation denotes following true
T15585 364-369 Protein denotes CXCL8
T15586 375-379 Protein denotes IL-6
R12651 T15581 T15583 themeOf CXCL8,expression
R12652 T15582 T15583 themeOf IL-6,expression
R12653 T15583 T15584 themeOf expression,following