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PMC:2889865 / 871-1179 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T679 0-3 DT denotes The
T680 4-12 NN denotes cytokine
T681 13-20 NN denotes profile
T682 21-29 VB denotes revealed
T683 30-32 DT denotes an
T684 33-46 NN denotes up-regulation
T685 47-49 IN denotes of
T686 50-53 DT denotes the
T687 54-63 NN denotes chemokine
T688 64-69 NN denotes CXCL8
T689 70-73 CC denotes and
T690 74-77 DT denotes the
T691 78-94 JJ denotes pro-inflammatory
T692 95-104 NN denotes cytokines
T693 105-108 NN denotes TNF
T694 108-109 -COMMA- denotes ,
T695 110-114 NN denotes IL-2
T696 115-118 CC denotes and
T697 119-123 NN denotes IL-6
T698 124-133 VB denotes following
T699 134-143 NN denotes treatment
T700 144-148 IN denotes with
T701 149-153 CC denotes both
T702 154-157 NN denotes PMA
T703 158-161 CC denotes and
T704 162-164 NN denotes HK
T705 165-167 FW denotes E.
T706 168-172 FW denotes coli
T707 172-173 -COMMA- denotes ,
T708 174-179 IN denotes while
T709 180-183 DT denotes the
T710 184-190 NN denotes levels
T711 191-193 IN denotes of
T712 194-197 DT denotes the
T713 198-215 JJ denotes anti-inflammatory
T714 216-224 NN denotes cytokine
T715 225-230 NN denotes IL-10
T716 231-235 VB denotes were
T717 236-239 RB denotes not
T718 240-248 VB denotes affected
T719 249-251 IN denotes by
T720 252-255 NN denotes PMA
T721 256-259 CC denotes but
T722 260-264 VB denotes were
T723 265-278 RB denotes significantly
T724 279-293 VB denotes down-regulated
T725 294-296 IN denotes by
T726 297-299 NNP denotes HK
T727 300-302 NNP denotes E.
T728 303-307 FW denotes coli
R563 T681 T679 arg1Of profile,The
R564 T681 T680 arg1Of profile,cytokine
R565 T681 T682 arg1Of profile,revealed
R566 T682 T698 arg1Of revealed,following
R567 T682 T707 arg1Of revealed,","
R568 T682 T708 arg1Of revealed,while
R569 T684 T683 arg1Of up-regulation,an
R570 T684 T685 arg1Of up-regulation,of
R571 T684 T689 arg1Of up-regulation,and
R572 T688 T685 arg2Of CXCL8,of
R573 T688 T686 arg1Of CXCL8,the
R574 T688 T687 arg1Of CXCL8,chemokine
R575 T689 T682 arg2Of and,revealed
R576 T692 T690 arg1Of cytokines,the
R577 T692 T691 arg1Of cytokines,pro-inflammatory
R578 T693 T694 arg1Of TNF,","
R579 T694 T696 arg1Of ",",and
R580 T695 T694 arg2Of IL-2,","
R581 T696 T689 arg2Of and,and
R582 T696 T692 arg1Of and,cytokines
R583 T697 T696 arg2Of IL-6,and
R584 T699 T698 arg2Of treatment,following
R585 T699 T700 arg1Of treatment,with
R586 T702 T703 arg1Of PMA,and
R587 T703 T700 arg2Of and,with
R588 T703 T701 arg1Of and,both
R589 T703 T706 arg1Of and,coli
R590 T704 T703 arg2Of HK,and
R591 T706 T705 arg1Of coli,E.
R592 T710 T709 arg1Of levels,the
R593 T710 T711 arg1Of levels,of
R594 T710 T716 arg1Of levels,were
R595 T710 T718 arg2Of levels,affected
R596 T710 T722 arg1Of levels,were
R597 T710 T724 arg2Of levels,down-regulated
R598 T715 T711 arg2Of IL-10,of
R599 T715 T712 arg1Of IL-10,the
R600 T715 T713 arg1Of IL-10,anti-inflammatory
R601 T715 T714 arg1Of IL-10,cytokine
R602 T718 T716 arg2Of affected,were
R603 T718 T717 arg1Of affected,not
R604 T718 T721 arg1Of affected,but
R605 T720 T718 arg1Of PMA,affected
R606 T720 T719 arg2Of PMA,by
R607 T721 T708 arg2Of but,while
R608 T724 T721 arg2Of down-regulated,but
R609 T724 T722 arg2Of down-regulated,were
R610 T724 T723 arg1Of down-regulated,significantly
R611 T727 T724 arg1Of E.,down-regulated
R612 T727 T725 arg2Of E.,by
R613 T727 T726 arg1Of E.,HK
R614 T727 T728 arg1Of E.,coli

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T283 0-3 DT denotes The
T284 4-12 NN denotes cytokine
T285 13-20 NN denotes profile
T286 21-29 VBD denotes revealed
T287 30-32 DT denotes an
T288 33-46 NN denotes up-regulation
T289 47-49 IN denotes of
T290 50-53 DT denotes the
T291 54-63 NN denotes chemokine
T292 64-69 NNP denotes CXCL8
T293 70-73 CC denotes and
T294 74-77 DT denotes the
T295 78-94 JJ denotes pro-inflammatory
T296 95-104 NNS denotes cytokines
T297 105-108 NNP denotes TNF
T298 108-109 , denotes ,
T299 110-114 NNP denotes IL-2
T300 115-118 CC denotes and
T301 119-123 NNP denotes IL-6
T302 124-133 VBG denotes following
T303 134-143 NN denotes treatment
T304 144-148 IN denotes with
T305 149-153 DT denotes both
T306 154-157 NNP denotes PMA
T307 158-161 CC denotes and
T308 162-164 NNP denotes HK
T309 165-167 NNP denotes E.
T310 168-172 NNS denotes coli
T311 172-173 , denotes ,
T312 174-179 IN denotes while
T313 180-183 DT denotes the
T314 184-190 NNS denotes levels
T315 191-193 IN denotes of
T316 194-197 DT denotes the
T317 198-215 JJ denotes anti-inflammatory
T318 216-224 NN denotes cytokine
T319 225-230 NN denotes IL-10
T320 231-235 VBD denotes were
T321 236-239 RB denotes not
T322 240-248 VBN denotes affected
T323 249-251 IN denotes by
T324 252-255 NNP denotes PMA
T325 256-259 CC denotes but
T326 260-264 VBD denotes were
T327 265-278 RB denotes significantly
T328 279-293 VBN denotes down-regulated
T329 294-296 IN denotes by
T330 297-299 NNP denotes HK
T331 300-302 NNP denotes E.
T332 303-307 NNS denotes coli
T333 307-308 . denotes .
R173 T283 T285 det The,profile
R174 T284 T285 compound cytokine,profile
R175 T285 T286 nsubj profile,revealed
R176 T286 T286 ROOT revealed,revealed
R177 T287 T288 det an,up-regulation
R178 T288 T286 dobj up-regulation,revealed
R179 T289 T288 prep of,up-regulation
R180 T290 T292 det the,CXCL8
R181 T291 T292 compound chemokine,CXCL8
R182 T292 T289 pobj CXCL8,of
R183 T293 T292 cc and,CXCL8
R184 T294 T296 det the,cytokines
R185 T295 T296 nsubj pro-inflammatory,cytokines
R186 T296 T292 conj cytokines,CXCL8
R187 T297 T296 conj TNF,cytokines
R188 T298 T297 punct ",",TNF
R189 T299 T297 conj IL-2,TNF
R190 T300 T299 cc and,IL-2
R191 T301 T299 conj IL-6,IL-2
R192 T302 T286 prep following,revealed
R193 T303 T302 pobj treatment,following
R194 T304 T303 prep with,treatment
R195 T305 T306 det both,PMA
R196 T306 T304 pobj PMA,with
R197 T307 T306 cc and,PMA
R198 T308 T310 compound HK,coli
R199 T309 T310 compound E.,coli
R200 T310 T306 conj coli,PMA
R201 T311 T286 punct ",",revealed
R202 T312 T322 mark while,affected
R203 T313 T314 det the,levels
R204 T314 T322 nsubjpass levels,affected
R205 T315 T314 prep of,levels
R206 T316 T319 det the,IL-10
R207 T317 T319 amod anti-inflammatory,IL-10
R208 T318 T319 compound cytokine,IL-10
R209 T319 T315 pobj IL-10,of
R210 T320 T322 auxpass were,affected
R211 T321 T322 neg not,affected
R212 T322 T286 advcl affected,revealed
R213 T323 T322 agent by,affected
R214 T324 T323 pobj PMA,by
R215 T325 T322 cc but,affected
R216 T326 T328 auxpass were,down-regulated
R217 T327 T328 advmod significantly,down-regulated
R218 T328 T322 conj down-regulated,affected
R219 T329 T328 agent by,down-regulated
R220 T330 T332 compound HK,coli
R221 T331 T332 compound E.,coli
R222 T332 T329 pobj coli,by
R223 T333 T286 punct .,revealed

GO-BP

Id Subject Object Predicate Lexical cue
T973 36-46 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T987 33-63 http://purl.obolibrary.org/obo/GO_0032722 denotes up-regulation of the chemokine

GO-MF

Id Subject Object Predicate Lexical cue
T1007 119-123 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6
T1011 110-114 http://purl.obolibrary.org/obo/GO_0005134 denotes IL-2
T1012 225-230 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T126 0-308 Sentence denotes The cytokine profile revealed an up-regulation of the chemokine CXCL8 and the pro-inflammatory cytokines TNF, IL-2 and IL-6 following treatment with both PMA and HK E. coli, while the levels of the anti-inflammatory cytokine IL-10 were not affected by PMA but were significantly down-regulated by HK E. coli.
T9 0-308 Sentence denotes The cytokine profile revealed an up-regulation of the chemokine CXCL8 and the pro-inflammatory cytokines TNF, IL-2 and IL-6 following treatment with both PMA and HK E. coli, while the levels of the anti-inflammatory cytokine IL-10 were not affected by PMA but were significantly down-regulated by HK E. coli.

events-check-again

Id Subject Object Predicate Lexical cue Negation
T1220 33-46 Positive_regulation denotes up-regulation
T1221 33-46 Positive_regulation denotes up-regulation
T1222 33-46 Positive_regulation denotes up-regulation
T1223 64-69 Protein denotes CXCL8
T1224 110-114 Protein denotes IL-2
T1225 119-123 Protein denotes IL-6
T1226 225-230 Protein denotes IL-10
T1227 240-248 Regulation denotes affected true
T1228 279-293 Negative_regulation denotes down-regulated
R881 T1223 T1222 themeOf CXCL8,up-regulation
R882 T1224 T1220 themeOf IL-2,up-regulation
R883 T1225 T1221 themeOf IL-6,up-regulation
R884 T1226 T1227 themeOf IL-10,affected
R885 T1226 T1228 themeOf IL-10,down-regulated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T1278 64-69 Protein denotes CXCL8
T1279 95-114 Protein denotes cytokines TNF, IL-2
T1280 119-123 Protein denotes IL-6
T1281 33-46 Positive_regulation denotes up-regulation
T1282 33-46 Positive_regulation denotes up-regulation
T1283 33-46 Positive_regulation denotes up-regulation
T1284 240-248 Regulation denotes affected
T1285 240-248 Regulation denotes affected
T1286 240-248 Regulation denotes affected
T1287 240-248 Regulation denotes affected
R910 T1278 T1281 themeOf CXCL8,up-regulation
R911 T1279 T1282 themeOf "cytokines TNF, IL-2",up-regulation
R912 T1280 T1283 themeOf IL-6,up-regulation
R913 T1280 T1284 themeOf IL-6,affected
R914 T1281 T1285 themeOf up-regulation,affected
R915 T1282 T1286 themeOf up-regulation,affected
R916 T1283 T1287 themeOf up-regulation,affected

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T87 33-46 Positive_regulation denotes up-regulation
T88 33-46 Positive_regulation denotes up-regulation
T89 33-46 Positive_regulation denotes up-regulation
T90 64-69 Protein denotes CXCL8
T91 110-114 Protein denotes IL-2
T92 119-123 Protein denotes IL-6
T93 225-230 Protein denotes IL-10
T94 240-248 Regulation denotes affected true
T95 279-293 Negative_regulation denotes down-regulated
R49 T90 T89 themeOf CXCL8,up-regulation
R50 T91 T87 themeOf IL-2,up-regulation
R51 T92 T88 themeOf IL-6,up-regulation
R52 T93 T94 themeOf IL-10,affected
R53 T93 T95 themeOf IL-10,down-regulated

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T934 64-69 P10145 denotes CXCL8
T935 105-108 P01375 denotes TNF
T936 110-114 P60568 denotes IL-2
T937 119-123 P05231 denotes IL-6
T938 225-230 P22301 denotes IL-10

test2

Id Subject Object Predicate Lexical cue Negation
T48 33-46 Positive_regulation denotes up-regulation true
T49 64-69 Protein denotes CXCL8
T50 110-114 Protein denotes IL-2
T51 119-123 Protein denotes IL-6
T52 124-133 Positive_regulation denotes following
T53 225-230 Protein denotes IL-10
T54 240-248 Regulation denotes affected
T55 279-293 Negative_regulation denotes down-regulated
R26 T49 T48 themeOf CXCL8,up-regulation
R27 T50 T48 themeOf IL-2,up-regulation
R28 T51 T48 themeOf IL-6,up-regulation
R29 T53 T54 themeOf IL-10,affected
R30 T53 T55 themeOf IL-10,down-regulated