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PMC:2889865 / 6878-7474 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3615 310-315 NN denotes NF-κB
T3616 316-322 NN denotes levels
T3617 323-329 VB denotes showed
T3618 330-331 DT denotes a
T3619 332-341 JJ denotes transient
T3620 342-350 NN denotes increase
T3621 351-353 IN denotes at
T3622 354-355 CD denotes 1
T3623 356-359 NN denotes min
T3624 360-365 IN denotes after
T3625 366-374 NN denotes exposure
T3626 375-377 TO denotes to
T3627 378-381 NN denotes PMA
T3628 382-383 -LRB- denotes (
T3629 383-389 NN denotes figure
T3630 390-392 NN denotes 2a
T3631 392-393 -RRB- denotes )
T3632 395-402 RB denotes However
T3633 402-403 -COMMA- denotes ,
T3634 404-405 CD denotes 1
T3635 406-407 NN denotes h
T3636 408-413 IN denotes after
T3637 414-422 NN denotes exposure
T3638 423-426 DT denotes the
T3639 427-432 NN denotes NF-κB
T3640 433-439 NN denotes levels
T3641 440-445 VB denotes began
T3642 446-448 TO denotes to
T3643 449-453 VB denotes drop
T3644 454-462 VB denotes reaching
T3645 463-466 DT denotes the
T3646 467-473 JJ denotes lowest
T3647 474-480 NN denotes levels
T3648 481-483 IN denotes by
T3649 484-485 CD denotes 6
T3650 486-487 NN denotes h
T3651 487-488 -COMMA- denotes ,
T3652 489-494 IN denotes after
T3653 495-500 WDT denotes which
T3654 501-505 PRP denotes they
T3655 506-515 VB denotes increased
T3656 516-521 RB denotes again
T3657 522-524 IN denotes by
T3658 525-527 CD denotes 24
T3659 528-529 NN denotes h
T3660 531-539 NN denotes Exposure
T3661 540-542 IN denotes of
T3662 543-549 NN denotes Jurkat
T3663 550-557 NN denotes T-cells
T3664 558-560 TO denotes to
T3665 561-563 NN denotes HK
T3666 564-566 NNP denotes E.
T3667 567-571 FW denotes coli
T3668 572-580 VB denotes resulted
T3669 581-583 IN denotes in
T3670 584-585 DT denotes a
T15201 1-6 VB denotes using
T15202 7-10 NN denotes PMA
T15203 11-16 RB denotes alone
T15204 17-18 -LRB- denotes (
T15205 18-22 JJ denotes grey
T15206 23-27 NN denotes bars
T15207 27-28 -RRB- denotes )
T15208 29-32 CC denotes and
T15209 33-35 IN denotes in
T15210 36-47 NN denotes combination
T15211 48-52 IN denotes with
T15212 53-60 NN denotes calcium
T15213 61-70 NN denotes ionophore
T15214 71-72 -LRB- denotes (
T15215 72-75 NN denotes CaI
T15216 76-79 CD denotes 955
T15217 80-82 NN denotes μM
T15218 82-83 -COMMA- denotes ,
T15219 84-89 JJ denotes black
T15220 90-94 NN denotes bars
T15221 94-95 -RRB- denotes )
T15222 95-96 -LRB- denotes .
T15223 97-98 NN denotes (
T15224 98-99 -RRB- denotes D
T15225 99-105 JJ denotes ) TCR-
T15226 105-114 JJ denotes /- defici
T15227 114-119 NN denotes ent c
T15228 119-128 VB denotes ells resp
T15229 128-130 TO denotes on
T15230 130-133 NN denotes ded
T15231 134-135 -LRB- denotes t
T15232 135-138 CD denotes o P
T15233 138-140 NN denotes MA
T15234 141-142 -RRB- denotes (
T15235 142-144 IN denotes 16
T15236 144-157 VB denotes 2 nM) by up-r
T15237 157-161 NN denotes egul
T15238 161-169 NN denotes ating AP
T15239 182-193 JJ denotes Statistical
T15240 194-206 NN denotes significance
T15241 207-211 IN denotes from
T15242 212-215 DT denotes the
T15243 216-223 NN denotes control
T15244 224-227 VB denotes was
T15245 228-238 VB denotes determined
T15246 239-244 VB denotes using
T15247 245-252 NN denotes Student
T15248 252-254 POS denotes 's
T15249 255-262 NN denotes t-test.
T15250 263-264 -LRB- denotes (
T15251 264-265 NN denotes n
T15252 266-267 SYM denotes =
T15253 268-269 CD denotes 4
T15254 269-270 -RRB- denotes )
T15255 272-280 NN denotes Controls
T15256 281-285 VB denotes were
T15257 286-297 RB denotes arbitrarily
T15258 298-301 VB denotes set
T15259 302-304 TO denotes to
T15260 305-306 CD denotes 1
R2966 T3616 T3615 arg1Of levels,NF-κB
R2967 T3616 T3617 arg1Of levels,showed
R2968 T3617 T3624 arg1Of showed,after
R2969 T3620 T3617 arg2Of increase,showed
R2970 T3620 T3618 arg1Of increase,a
R2971 T3620 T3619 arg1Of increase,transient
R2972 T3620 T3621 arg1Of increase,at
R2973 T3623 T3621 arg2Of min,at
R2974 T3623 T3622 arg1Of min,1
R2975 T3625 T3624 arg2Of exposure,after
R2976 T3625 T3626 arg1Of exposure,to
R2977 T3627 T3626 arg2Of PMA,to
R2978 T3627 T3628 arg1Of PMA,(
R2979 T3630 T3628 arg2Of 2a,(
R2980 T3630 T3629 arg1Of 2a,figure
R2981 T3631 T3628 arg3Of ),(
R2982 T3635 T3634 arg1Of h,1
R2983 T3635 T3644 arg1Of h,reaching
R2984 T3637 T3636 arg2Of exposure,after
R2985 T3637 T3643 arg2Of exposure,drop
R2986 T3640 T3638 arg1Of levels,the
R2987 T3640 T3639 arg1Of levels,NF-κB
R2988 T3640 T3641 arg1Of levels,began
R2989 T3640 T3643 arg1Of levels,drop
R2990 T3643 T3641 arg2Of drop,began
R2991 T3643 T3642 arg1Of drop,to
R2992 T3644 T3632 arg1Of reaching,However
R2993 T3644 T3633 arg1Of reaching,","
R2994 T3644 T3636 arg1Of reaching,after
R2995 T3644 T3648 arg1Of reaching,by
R2996 T3647 T3644 arg2Of levels,reaching
R2997 T3647 T3645 arg1Of levels,the
R2998 T3647 T3646 arg1Of levels,lowest
R2999 T3650 T3648 arg2Of h,by
R3000 T3650 T3649 arg1Of h,6
R3001 T3650 T3651 arg1Of h,","
R3002 T3650 T3652 arg2Of h,after
R3003 T3650 T3653 arg1Of h,which
R3004 T3654 T3655 arg1Of they,increased
R3005 T3655 T3652 arg1Of increased,after
R3006 T3655 T3656 arg1Of increased,again
R3007 T3655 T3657 arg1Of increased,by
R3008 T3659 T3657 arg2Of h,by
R3009 T3659 T3658 arg1Of h,24
R3010 T3660 T3661 arg1Of Exposure,of
R3011 T3660 T3664 arg1Of Exposure,to
R3012 T3660 T3668 arg1Of Exposure,resulted
R3013 T3663 T3661 arg2Of T-cells,of
R3014 T3663 T3662 arg1Of T-cells,Jurkat
R3015 T3666 T3664 arg2Of E.,to
R3016 T3666 T3665 arg1Of E.,HK
R3017 T3666 T3667 arg1Of E.,coli
R3018 T3668 T3669 arg1Of resulted,in
R12356 T15202 T15201 arg2Of PMA,using
R12357 T15202 T15203 arg1Of PMA,alone
R12358 T15202 T15204 arg1Of PMA,(
R12359 T15206 T15204 arg2Of bars,(
R12360 T15206 T15205 arg1Of bars,grey
R12361 T15207 T15204 arg3Of ),(
R12362 T15209 T15208 arg2Of in,and
R12363 T15210 T15209 arg2Of combination,in
R12364 T15210 T15211 arg1Of combination,with
R12365 T15213 T15211 arg2Of ionophore,with
R12366 T15213 T15212 arg1Of ionophore,calcium
R12367 T15217 T15214 arg2Of μM,(
R12368 T15217 T15215 arg1Of μM,CaI
R12369 T15217 T15216 arg1Of μM,955
R12370 T15217 T15218 arg1Of μM,","
R12371 T15220 T15218 arg2Of bars,","
R12372 T15220 T15219 arg1Of bars,black
R12373 T15221 T15214 arg3Of ),(
R12374 T15223 T15222 arg2Of (,.
R12375 T15224 T15222 arg3Of D,.
R12376 T15227 T15222 arg1Of ent c,.
R12377 T15227 T15225 arg1Of ent c,) TCR-
R12378 T15227 T15226 arg1Of ent c,/- defici
R12379 T15227 T15228 arg1Of ent c,ells resp
R12380 T15227 T15236 arg1Of ent c,2 nM) by up-r
R12382 T15228 T15229 arg1Of ells resp,on
R12383 T15228 T15235 arg1Of ells resp,16
R12384 T15230 T15229 arg2Of ded,on
R12385 T15230 T15231 arg1Of ded,t
R12386 T15233 T15231 arg2Of MA,t
R12387 T15233 T15232 arg1Of MA,o P
R12388 T15234 T15231 arg3Of (,t
R12389 T15236 T15235 arg2Of 2 nM) by up-r,16
R12390 T15238 T15236 arg2Of ating AP,2 nM) by up-r
R12391 T15238 T15237 arg1Of ating AP,egul
R12392 T15240 T15239 arg1Of significance,Statistical
R12393 T15240 T15241 arg1Of significance,from
R12394 T15240 T15244 arg1Of significance,was
R12395 T15240 T15245 arg2Of significance,determined
R12396 T15243 T15241 arg2Of control,from
R12397 T15243 T15242 arg1Of control,the
R12398 T15245 T15244 arg2Of determined,was
R12399 T15246 T15245 arg3Of using,determined
R12400 T15247 T15248 arg2Of Student,'s
R12401 T15249 T15246 arg2Of t-test.,using
R12402 T15249 T15248 arg1Of t-test.,'s
R12403 T15249 T15250 arg1Of t-test.,(
R12404 T15251 T15250 arg2Of n,(
R12405 T15251 T15252 arg1Of n,=
R12406 T15251 T15253 arg1Of n,4
R12407 T15254 T15250 arg3Of ),(
R12408 T15255 T15256 arg1Of Controls,were
R12409 T15255 T15258 arg2Of Controls,set
R12410 T15258 T15256 arg2Of set,were
R12411 T15258 T15257 arg1Of set,arbitrarily
R12412 T15258 T15259 arg1Of set,to
R12413 T15260 T15259 arg2Of 1,to

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3270 310-315 NN denotes NF-κB
T3271 316-322 NNS denotes levels
T3272 323-329 VBD denotes showed
T3273 330-331 DT denotes a
T3274 375-377 TO denotes to
T3275 332-341 JJ denotes transient
T3276 342-350 NN denotes increase
T3277 351-353 IN denotes at
T3278 354-355 CD denotes 1
T3279 356-359 NN denotes min
T3280 360-365 IN denotes after
T3281 366-374 NN denotes exposure
T3282 378-381 NNP denotes PMA
T3283 382-383 -LRB- denotes (
T3284 383-389 NN denotes figure
T3285 390-392 NN denotes 2a
T3286 392-393 -RRB- denotes )
T3287 393-394 . denotes .
T3288 395-402 RB denotes However
T3289 402-403 , denotes ,
T3290 404-405 CD denotes 1
T3291 406-407 NN denotes h
T3292 408-413 IN denotes after
T3293 414-422 NN denotes exposure
T3294 423-426 DT denotes the
T3295 427-432 NN denotes NF-κB
T3296 433-439 NNS denotes levels
T3297 440-445 VBD denotes began
T3298 446-448 TO denotes to
T3299 449-453 VB denotes drop
T3300 454-462 VBG denotes reaching
T3301 463-466 DT denotes the
T3302 467-473 JJS denotes lowest
T3303 474-480 NNS denotes levels
T3304 481-483 IN denotes by
T3305 484-485 CD denotes 6
T3306 486-487 NN denotes h
T3307 487-488 , denotes ,
T3308 489-494 IN denotes after
T3309 495-500 WDT denotes which
T3310 501-505 PRP denotes they
T3311 506-515 VBD denotes increased
T3312 516-521 RB denotes again
T3313 522-524 IN denotes by
T3314 525-527 CD denotes 24
T3315 528-530 NN denotes h.
T3316 531-539 NN denotes Exposure
T3317 540-542 IN denotes of
T3318 543-549 NNP denotes Jurkat
T3319 550-557 NNS denotes T-cells
T3320 558-560 TO denotes to
T3321 561-563 NNP denotes HK
T3322 564-566 NNP denotes E.
T3323 567-571 NNS denotes coli
T3324 572-580 VBD denotes resulted
T3325 581-583 IN denotes in
T3326 584-585 DT denotes a
T15082 1-6 VBG denotes using
T15083 7-10 NNP denotes PMA
T15084 11-16 RB denotes alone
T15085 17-18 -LRB- denotes (
T15086 18-22 NN denotes grey
T15087 23-27 NNS denotes bars
T15088 27-28 -RRB- denotes )
T15089 29-32 CC denotes and
T15090 33-35 IN denotes in
T15091 36-47 NN denotes combination
T15092 48-52 IN denotes with
T15093 53-60 NN denotes calcium
T15094 61-70 NN denotes ionophore
T15095 71-72 -LRB- denotes (
T15096 72-75 NNP denotes CaI
T15097 76-79 CD denotes 955
T15098 80-82 NNP denotes μM
T15099 82-83 , denotes ,
T15100 84-89 JJ denotes black
T15101 90-94 NNS denotes bars
T15102 94-95 -RRB- denotes )
T15103 95-96 . denotes .
T15104 97-98 -LRB- denotes (
T15105 98-99 NNP denotes D
T15106 99-100 -RRB- denotes )
T15107 101-104 SYM denotes TCR
T15108 104-105 : denotes -
T15109 105-106 SYM denotes /
T15110 106-107 : denotes -
T15111 108-117 NN denotes deficient
T15112 118-123 NNS denotes cells
T15113 124-133 VBD denotes responded
T15114 134-136 TO denotes to
T15115 137-140 NNP denotes PMA
T15116 141-142 -LRB- denotes (
T15117 142-145 CD denotes 162
T15118 146-148 NNP denotes nM
T15119 148-149 -RRB- denotes )
T15120 150-152 IN denotes by
T15121 153-166 JJ denotes up-regulating
T15122 167-171 NN denotes AP-1
T15123 172-180 NN denotes activity
T15124 180-181 . denotes .
T15125 182-193 NNP denotes Statistical
T15126 194-206 NN denotes significance
T15127 207-211 IN denotes from
T15128 212-215 DT denotes the
T15129 216-223 NN denotes control
T15130 224-227 VBD denotes was
T15131 228-238 VBN denotes determined
T15132 239-244 VBG denotes using
T15133 245-252 NN denotes Student
T15134 252-254 POS denotes 's
T15135 255-261 JJS denotes t-test
T15136 261-262 . denotes .
T15137 263-264 -LRB- denotes (
T15138 264-265 FW denotes n
T15139 266-267 SYM denotes =
T15140 268-269 LS denotes 4
T15141 269-270 -RRB- denotes )
T15142 270-271 . denotes .
T15143 272-280 NNP denotes Controls
T15144 281-285 VBD denotes were
T15145 286-297 RB denotes arbitrarily
T15146 298-301 VBN denotes set
T15147 302-304 TO denotes to
T15148 305-306 CD denotes 1
T15149 306-307 . denotes .
R2615 T3270 T3271 compound NF-κB,levels
R2616 T3271 T3272 nsubj levels,showed
R2617 T3272 T3272 ROOT showed,showed
R2618 T3273 T3276 det a,increase
R2619 T3274 T3281 prep to,exposure
R2620 T3275 T3276 amod transient,increase
R2621 T3276 T3272 dobj increase,showed
R2622 T3277 T3272 prep at,showed
R2623 T3278 T3279 nummod 1,min
R2624 T3279 T3277 pobj min,at
R2625 T3280 T3272 prep after,showed
R2626 T3281 T3280 pobj exposure,after
R2627 T3282 T3274 pobj PMA,to
R2628 T3283 T3285 punct (,2a
R2629 T3284 T3285 compound figure,2a
R2630 T3285 T3282 appos 2a,PMA
R2631 T3286 T3272 punct ),showed
R2632 T3287 T3272 punct .,showed
R2633 T3288 T3297 advmod However,began
R2634 T3289 T3297 punct ",",began
R2635 T3290 T3291 nummod 1,h
R2636 T3291 T3297 nsubj h,began
R2637 T3292 T3291 prep after,h
R2638 T3293 T3292 pobj exposure,after
R2639 T3294 T3296 det the,levels
R2640 T3295 T3296 compound NF-κB,levels
R2641 T3296 T3297 nsubj levels,began
R2642 T3297 T3297 ROOT began,began
R2643 T3298 T3299 aux to,drop
R2644 T3299 T3297 xcomp drop,began
R2645 T3300 T3299 xcomp reaching,drop
R2646 T3301 T3303 det the,levels
R2647 T3302 T3303 amod lowest,levels
R2648 T3303 T3300 dobj levels,reaching
R2649 T3304 T3303 prep by,levels
R2650 T3305 T3306 nummod 6,h
R2651 T3306 T3304 pobj h,by
R2652 T3307 T3300 punct ",",reaching
R2653 T3308 T3311 prep after,increased
R2654 T3309 T3308 pobj which,after
R2655 T3310 T3311 nsubj they,increased
R2656 T3311 T3297 advcl increased,began
R2657 T3312 T3311 advmod again,increased
R2658 T3313 T3311 prep by,increased
R2659 T3314 T3316 nummod 24,Exposure
R2660 T3315 T3316 compound h.,Exposure
R2661 T3316 T3313 pobj Exposure,by
R2662 T3317 T3316 prep of,Exposure
R2663 T3318 T3319 compound Jurkat,T-cells
R2664 T3319 T3317 pobj T-cells,of
R2665 T3320 T3311 prep to,increased
R2666 T3321 T3323 compound HK,coli
R2667 T3322 T3323 compound E.,coli
R2668 T3323 T3320 pobj coli,to
R2669 T3324 T3311 conj resulted,increased
R2670 T3325 T3324 prep in,resulted
R12233 T15083 T15082 dobj PMA,using
R12234 T15084 T15083 advmod alone,PMA
R12235 T15085 T15083 punct (,PMA
R12236 T15086 T15087 amod grey,bars
R12237 T15087 T15083 appos bars,PMA
R12238 T15088 T15083 punct ),PMA
R12241 T15091 T15090 pobj combination,in
R12242 T15092 T15091 prep with,combination
R12243 T15093 T15094 compound calcium,ionophore
R12244 T15094 T15092 pobj ionophore,with
R12245 T15095 T15094 punct (,ionophore
R12246 T15096 T15098 nmod CaI,μM
R12247 T15097 T15098 nummod 955,μM
R12248 T15098 T15094 appos μM,ionophore
R12249 T15099 T15101 punct ",",bars
R12250 T15100 T15101 amod black,bars
R12251 T15101 T15098 appos bars,μM
R12252 T15102 T15098 punct ),μM
R12254 T15104 T15105 punct (,D
R12255 T15105 T15105 ROOT D,D
R12256 T15106 T15105 punct ),D
R12257 T15107 T15112 amod TCR,cells
R12258 T15108 T15111 punct -,deficient
R12259 T15109 T15111 punct /,deficient
R12260 T15110 T15111 punct -,deficient
R12261 T15111 T15112 amod deficient,cells
R12262 T15112 T15113 nsubj cells,responded
R12263 T15113 T15113 ROOT responded,responded
R12264 T15114 T15113 prep to,responded
R12265 T15115 T15114 pobj PMA,to
R12266 T15116 T15115 punct (,PMA
R12267 T15117 T15118 nummod 162,nM
R12268 T15118 T15115 appos nM,PMA
R12269 T15119 T15115 punct ),PMA
R12270 T15120 T15113 prep by,responded
R12271 T15121 T15123 amod up-regulating,activity
R12272 T15122 T15123 compound AP-1,activity
R12273 T15123 T15120 pobj activity,by
R12274 T15124 T15113 punct .,responded
R12275 T15125 T15126 compound Statistical,significance
R12276 T15126 T15131 nsubjpass significance,determined
R12277 T15127 T15126 prep from,significance
R12278 T15128 T15129 det the,control
R12279 T15129 T15127 pobj control,from
R12280 T15130 T15131 auxpass was,determined
R12281 T15131 T15131 ROOT determined,determined
R12282 T15132 T15131 advcl using,determined
R12283 T15133 T15135 poss Student,t-test
R12284 T15134 T15133 case 's,Student
R12285 T15135 T15132 dobj t-test,using
R12286 T15136 T15131 punct .,determined
R12287 T15137 T15140 punct (,4
R12288 T15138 T15140 advmod n,4
R12289 T15139 T15140 punct =,4
R12290 T15140 T15146 meta 4,set
R12291 T15141 T15140 punct ),4
R12292 T15142 T15140 punct .,4
R12293 T15143 T15146 nsubjpass Controls,set
R12294 T15144 T15146 auxpass were,set
R12295 T15145 T15146 advmod arbitrarily,set
R12296 T15146 T15146 ROOT set,set
R12297 T15147 T15146 prep to,set
R12298 T15148 T15147 pobj 1,to
R12299 T15149 T15146 punct .,set

GO-BP

Id Subject Object Predicate Lexical cue
T15273 61-70 http://purl.obolibrary.org/obo/GO_0022809 denotes ionophore
T15274 101-104 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR

GO-MF

Id Subject Object Predicate Lexical cue
T15275 61-70 http://purl.obolibrary.org/obo/GO_0022809 denotes ionophore

GO-CC

Id Subject Object Predicate Lexical cue
T3809 552-557 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15278 118-123 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T15279 101-104 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR

sentences

Id Subject Object Predicate Lexical cue
T3058 310-394 Sentence denotes NF-κB levels showed a transient increase at 1 min after exposure to PMA (figure 2a).
T3059 395-530 Sentence denotes However, 1 h after exposure the NF-κB levels began to drop reaching the lowest levels by 6 h, after which they increased again by 24 h.
T15025 182-271 Sentence denotes Statistical significance from the control was determined using Student's t-test. (n = 4).
T15026 272-307 Sentence denotes Controls were arbitrarily set to 1.
T48 182-271 Sentence denotes Statistical significance from the control was determined using Student's t-test. (n = 4).
T49 272-307 Sentence denotes Controls were arbitrarily set to 1.
T50 310-394 Sentence denotes NF-κB levels showed a transient increase at 1 min after exposure to PMA (figure 2a).
T51 395-530 Sentence denotes However, 1 h after exposure the NF-κB levels began to drop reaching the lowest levels by 6 h, after which they increased again by 24 h.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3844 310-315 Protein denotes NF-κB
T3845 342-350 Positive_regulation denotes increase
T3846 427-432 Protein denotes NF-κB
T3847 561-565 Protein denotes HK E
T15296 72-82 Protein denotes CaI 955 μM
T15298 167-171 Protein denotes AP-1
T15299 153-166 Positive_regulation denotes up-regulating
R12419 T15298 T15299 themeOf AP-1,up-regulating
R3133 T3844 T3845 themeOf NF-κB,increase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T15267 167-171 P05412 denotes AP-1