PMC:2889865 / 4888-5147 JSONTXT

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    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T2437","span":{"begin":0,"end":5},"obj":"VB"},{"id":"T2438","span":{"begin":6,"end":12},"obj":"NN"},{"id":"T2439","span":{"begin":13,"end":20},"obj":"NN"},{"id":"T2440","span":{"begin":21,"end":28},"obj":"VB"},{"id":"T2441","span":{"begin":29,"end":31},"obj":"TO"},{"id":"T2442","span":{"begin":32,"end":35},"obj":"NN"},{"id":"T2443","span":{"begin":36,"end":39},"obj":"CC"},{"id":"T2444","span":{"begin":40,"end":44},"obj":"NN"},{"id":"T2445","span":{"begin":45,"end":51},"obj":"VB"},{"id":"T2446","span":{"begin":52,"end":53},"obj":"-LRB-"},{"id":"T2447","span":{"begin":53,"end":55},"obj":"NN"},{"id":"T2448","span":{"begin":55,"end":56},"obj":"-RRB-"},{"id":"T2449","span":{"begin":57,"end":68},"obj":"FW"},{"id":"T2450","span":{"begin":69,"end":73},"obj":"FW"},{"id":"T2451","span":{"begin":74,"end":80},"obj":"NN"},{"id":"T2452","span":{"begin":81,"end":83},"obj":"IN"},{"id":"T2453","span":{"begin":84,"end":95},"obj":"NN"},{"id":"T2454","span":{"begin":96,"end":100},"obj":"IN"},{"id":"T2455","span":{"begin":101,"end":111},"obj":"NN"},{"id":"T2456","span":{"begin":112,"end":114},"obj":"IN"},{"id":"T2457","span":{"begin":115,"end":120},"obj":"NN"},{"id":"T2458","span":{"begin":120,"end":121},"obj":"-COMMA-"},{"id":"T2459","span":{"begin":122,"end":125},"obj":"NN"},{"id":"T2460","span":{"begin":126,"end":129},"obj":"CC"},{"id":"T2461","span":{"begin":130,"end":133},"obj":"NN"},{"id":"T2462","span":{"begin":133,"end":134},"obj":"-COMMA-"},{"id":"T2463","span":{"begin":135,"end":137},"obj":"PRP"},{"id":"T2464","span":{"begin":138,"end":150},"obj":"VB"},{"id":"T2465","span":{"begin":151,"end":155},"obj":"IN"},{"id":"T2466","span":{"begin":156,"end":161},"obj":"NN"},{"id":"T2467","span":{"begin":162,"end":171},"obj":"VB"},{"id":"T2468","span":{"begin":172,"end":176},"obj":"NN"},{"id":"T2469","span":{"begin":177,"end":187},"obj":"NN"},{"id":"T2470","span":{"begin":188,"end":193},"obj":"IN"},{"id":"T2471","span":{"begin":194,"end":197},"obj":"DT"},{"id":"T2472","span":{"begin":198,"end":208},"obj":"NN"},{"id":"T2473","span":{"begin":209,"end":211},"obj":"IN"},{"id":"T2474","span":{"begin":212,"end":217},"obj":"NN"},{"id":"T2475","span":{"begin":218,"end":222},"obj":"RB"},{"id":"T2476","span":{"begin":223,"end":230},"obj":"RB"},{"id":"T2477","span":{"begin":231,"end":241},"obj":"VB"},{"id":"T2478","span":{"begin":242,"end":244},"obj":"TO"},{"id":"T2479","span":{"begin":245,"end":249},"obj":"NN"},{"id":"T2480","span":{"begin":250,"end":258},"obj":"NN"}],"relations":[{"id":"R2040","pred":"arg1Of","subj":"T2440","obj":"T2441"},{"id":"R2045","pred":"arg1Of","subj":"T2442","obj":"T2443"},{"id":"R2052","pred":"arg2Of","subj":"T2443","obj":"T2441"},{"id":"R2056","pred":"arg1Of","subj":"T2443","obj":"T2452"},{"id":"R2057","pred":"arg2Of","subj":"T2444","obj":"T2445"},{"id":"R2062","pred":"arg1Of","subj":"T2445","obj":"T2446"},{"id":"R2068","pred":"arg2Of","subj":"T2447","obj":"T2446"},{"id":"R2070","pred":"arg3Of","subj":"T2448","obj":"T2446"},{"id":"R2071","pred":"arg2Of","subj":"T2439","obj":"T2437"},{"id":"R2072","pred":"arg1Of","subj":"T2439","obj":"T2438"},{"id":"R2073","pred":"arg2Of","subj":"T2439","obj":"T2440"},{"id":"R2074","pred":"arg2Of","subj":"T2451","obj":"T2443"},{"id":"R2075","pred":"arg1Of","subj":"T2451","obj":"T2444"},{"id":"R2076","pred":"arg1Of","subj":"T2451","obj":"T2449"},{"id":"R2077","pred":"arg1Of","subj":"T2451","obj":"T2450"},{"id":"R2078","pred":"arg2Of","subj":"T2453","obj":"T2452"},{"id":"R2079","pred":"arg1Of","subj":"T2453","obj":"T2454"},{"id":"R2080","pred":"arg2Of","subj":"T2455","obj":"T2454"},{"id":"R2088","pred":"arg1Of","subj":"T2455","obj":"T2456"},{"id":"R2089","pred":"arg1Of","subj":"T2457","obj":"T2458"},{"id":"R2094","pred":"arg1Of","subj":"T2458","obj":"T2460"},{"id":"R2097","pred":"arg2Of","subj":"T2459","obj":"T2458"},{"id":"R2098","pred":"arg2Of","subj":"T2460","obj":"T2456"},{"id":"R2099","pred":"arg2Of","subj":"T2461","obj":"T2460"},{"id":"R2100","pred":"arg1Of","subj":"T2463","obj":"T2437"},{"id":"R2101","pred":"arg1Of","subj":"T2463","obj":"T2464"},{"id":"R2102","pred":"modOf","subj":"T2464","obj":"T2437"},{"id":"R2103","pred":"arg1Of","subj":"T2464","obj":"T2462"},{"id":"R2104","pred":"arg1Of","subj":"T2466","obj":"T2467"},{"id":"R2105","pred":"arg2Of","subj":"T2467","obj":"T2464"},{"id":"R2106","pred":"arg1Of","subj":"T2467","obj":"T2465"},{"id":"R2107","pred":"arg1Of","subj":"T2467","obj":"T2470"},{"id":"R2108","pred":"arg2Of","subj":"T2469","obj":"T2467"},{"id":"R2109","pred":"arg1Of","subj":"T2469","obj":"T2468"},{"id":"R2110","pred":"arg1Of","subj":"T2472","obj":"T2471"},{"id":"R2111","pred":"arg1Of","subj":"T2472","obj":"T2473"},{"id":"R2112","pred":"arg2Of","subj":"T2472","obj":"T2477"},{"id":"R2113","pred":"arg2Of","subj":"T2474","obj":"T2473"},{"id":"R2114","pred":"arg1Of","subj":"T2476","obj":"T2475"},{"id":"R2115","pred":"arg2Of","subj":"T2477","obj":"T2470"},{"id":"R2116","pred":"arg1Of","subj":"T2477","obj":"T2476"}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Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1949","span":{"begin":0,"end":5},"obj":"VBG"},{"id":"T1950","span":{"begin":6,"end":12},"obj":"NNP"},{"id":"T1951","span":{"begin":13,"end":20},"obj":"NNS"},{"id":"T1952","span":{"begin":21,"end":28},"obj":"VBN"},{"id":"T1953","span":{"begin":29,"end":31},"obj":"TO"},{"id":"T1954","span":{"begin":32,"end":35},"obj":"NNP"},{"id":"T1955","span":{"begin":36,"end":39},"obj":"CC"},{"id":"T1956","span":{"begin":40,"end":44},"obj":"NN"},{"id":"T1957","span":{"begin":45,"end":51},"obj":"VBN"},{"id":"T1958","span":{"begin":52,"end":53},"obj":"-LRB-"},{"id":"T1959","span":{"begin":53,"end":55},"obj":"NNP"},{"id":"T1960","span":{"begin":55,"end":56},"obj":"-RRB-"},{"id":"T1961","span":{"begin":57,"end":68},"obj":"NNP"},{"id":"T1962","span":{"begin":69,"end":73},"obj":"NNS"},{"id":"T1963","span":{"begin":74,"end":80},"obj":"NNP"},{"id":"T1964","span":{"begin":81,"end":83},"obj":"IN"},{"id":"T1965","span":{"begin":84,"end":95},"obj":"NN"},{"id":"T1966","span":{"begin":96,"end":100},"obj":"IN"},{"id":"T1967","span":{"begin":101,"end":111},"obj":"NNS"},{"id":"T1968","span":{"begin":112,"end":114},"obj":"IN"},{"id":"T1969","span":{"begin":115,"end":120},"obj":"NNP"},{"id":"T1970","span":{"begin":120,"end":121},"obj":","},{"id":"T1971","span":{"begin":122,"end":125},"obj":"NNP"},{"id":"T1972","span":{"begin":126,"end":129},"obj":"CC"},{"id":"T1973","span":{"begin":130,"end":133},"obj":"NNP"},{"id":"T1974","span":{"begin":133,"end":134},"obj":","},{"id":"T1975","span":{"begin":135,"end":137},"obj":"PRP"},{"id":"T1976","span":{"begin":138,"end":150},"obj":"VBD"},{"id":"T1977","span":{"begin":151,"end":155},"obj":"IN"},{"id":"T1978","span":{"begin":156,"end":161},"obj":"JJ"},{"id":"T1979","span":{"begin":162,"end":171},"obj":"VBZ"},{"id":"T1980","span":{"begin":172,"end":176},"obj":"NNP"},{"id":"T1981","span":{"begin":177,"end":187},"obj":"NN"},{"id":"T1982","span":{"begin":188,"end":193},"obj":"IN"},{"id":"T1983","span":{"begin":194,"end":197},"obj":"DT"},{"id":"T1984","span":{"begin":198,"end":208},"obj":"NN"},{"id":"T1985","span":{"begin":209,"end":211},"obj":"IN"},{"id":"T1986","span":{"begin":212,"end":217},"obj":"CD"},{"id":"T1987","span":{"begin":218,"end":222},"obj":"JJR"},{"id":"T1988","span":{"begin":223,"end":230},"obj":"RB"},{"id":"T1989","span":{"begin":231,"end":241},"obj":"JJ"},{"id":"T1990","span":{"begin":242,"end":244},"obj":"TO"},{"id":"T1991","span":{"begin":245,"end":249},"obj":"JJ"},{"id":"T1992","span":{"begin":250,"end":258},"obj":"NN"},{"id":"T1993","span":{"begin":258,"end":259},"obj":"."}],"relations":[{"id":"R1559","pred":"ROOT","subj":"T1949","obj":"T1949"},{"id":"R1560","pred":"compound","subj":"T1950","obj":"T1951"},{"id":"R1561","pred":"dobj","subj":"T1951","obj":"T1949"},{"id":"R1562","pred":"acl","subj":"T1952","obj":"T1951"},{"id":"R1563","pred":"prep","subj":"T1953","obj":"T1952"},{"id":"R1564","pred":"pobj","subj":"T1954","obj":"T1953"},{"id":"R1565","pred":"cc","subj":"T1955","obj":"T1954"},{"id":"R1566","pred":"conj","subj":"T1956","obj":"T1954"},{"id":"R1567","pred":"acl","subj":"T1957","obj":"T1951"},{"id":"R1568","pred":"punct","subj":"T1958","obj":"T1951"},{"id":"R1569","pred":"appos","subj":"T1959","obj":"T1951"},{"id":"R1570","pred":"punct","subj":"T1960","obj":"T1951"},{"id":"R1571","pred":"compound","subj":"T1961","obj":"T1963"},{"id":"R1572","pred":"compound","subj":"T1962","obj":"T1963"},{"id":"R1573","pred":"advcl","subj":"T1963","obj":"T1976"},{"id":"R1574","pred":"prep","subj":"T1964","obj":"T1963"},{"id":"R1575","pred":"pobj","subj":"T1965","obj":"T1964"},{"id":"R1576","pred":"prep","subj":"T1966","obj":"T1963"},{"id":"R1577","pred":"pobj","subj":"T1967","obj":"T1966"},{"id":"R1578","pred":"prep","subj":"T1968","obj":"T1967"},{"id":"R1579","pred":"pobj","subj":"T1969","obj":"T1968"},{"id":"R1580","pred":"punct","subj":"T1970","obj":"T1969"},{"id":"R1581","pred":"conj","subj":"T1971","obj":"T1969"},{"id":"R1582","pred":"cc","subj":"T1972","obj":"T1971"},{"id":"R1583","pred":"conj","subj":"T1973","obj":"T1971"},{"id":"R1584","pred":"punct","subj":"T1974","obj":"T1976"},{"id":"R1585","pred":"nsubj","subj":"T1975","obj":"T1976"},{"id":"R1586","pred":"ROOT","subj":"T1976","obj":"T1976"},{"id":"R1587","pred":"mark","subj":"T1977","obj":"T1979"},{"id":"R1588","pred":"nsubj","subj":"T1978","obj":"T1979"},{"id":"R1589","pred":"ccomp","subj":"T1979","obj":"T1976"},{"id":"R1590","pred":"compound","subj":"T1980","obj":"T1981"},{"id":"R1591","pred":"dobj","subj":"T1981","obj":"T1979"},{"id":"R1592","pred":"mark","subj":"T1982","obj":"T1989"},{"id":"R1593","pred":"det","subj":"T1983","obj":"T1984"},{"id":"R1594","pred":"nsubj","subj":"T1984","obj":"T1989"},{"id":"R1595","pred":"prep","subj":"T1985","obj":"T1984"},{"id":"R1596","pred":"pobj","subj":"T1986","obj":"T1985"},{"id":"R1597","pred":"amod","subj":"T1987","obj":"T1986"},{"id":"R1598","pred":"advmod","subj":"T1988","obj":"T1989"},{"id":"R1599","pred":"advcl","subj":"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Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T2580","span":{"begin":198,"end":208},"obj":"http://purl.obolibrary.org/obo/GO_0065007"},{"id":"T2610","span":{"begin":101,"end":120},"obj":"http://purl.obolibrary.org/obo/GO_0032088"},{"id":"T2611","span":{"begin":101,"end":120},"obj":"http://purl.obolibrary.org/obo/GO_0007252"},{"id":"T2612","span":{"begin":122,"end":125},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T2613","span":{"begin":130,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0004697"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T2626","span":{"begin":172,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0005138"},{"id":"T2631","span":{"begin":122,"end":125},"obj":"http://purl.obolibrary.org/obo/GO_0004705"},{"id":"T2632","span":{"begin":130,"end":133},"obj":"http://purl.obolibrary.org/obo/GO_0004697"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T2638","span":{"begin":15,"end":20},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1519","span":{"begin":0,"end":259},"obj":"Sentence"},{"id":"T35","span":{"begin":0,"end":259},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2966","span":{"begin":162,"end":171},"obj":"Regulation"},{"id":"T2967","span":{"begin":172,"end":176},"obj":"Protein"},{"id":"T2968","span":{"begin":177,"end":187},"obj":"Gene_expression"},{"id":"T2969","span":{"begin":198,"end":208},"obj":"Regulation"},{"id":"T2970","span":{"begin":212,"end":217},"obj":"Protein"},{"id":"T2971","span":{"begin":245,"end":249},"obj":"Protein"}],"relations":[{"id":"R2387","pred":"themeOf","subj":"T2967","obj":"T2968"},{"id":"R2388","pred":"themeOf","subj":"T2968","obj":"T2966"},{"id":"R2390","pred":"themeOf","subj":"T2970","obj":"T2969"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T3034","span":{"begin":115,"end":120},"obj":"Protein"},{"id":"T3035","span":{"begin":122,"end":125},"obj":"Protein"},{"id":"T3036","span":{"begin":130,"end":133},"obj":"Protein"},{"id":"T3037","span":{"begin":156,"end":161},"obj":"Protein"},{"id":"T3038","span":{"begin":172,"end":176},"obj":"Protein"},{"id":"T3039","span":{"begin":212,"end":217},"obj":"Protein"},{"id":"T3040","span":{"begin":245,"end":249},"obj":"Protein"},{"id":"T3041","span":{"begin":101,"end":111},"obj":"Negative_regulation"},{"id":"T3042","span":{"begin":101,"end":111},"obj":"Negative_regulation"},{"id":"T3043","span":{"begin":101,"end":111},"obj":"Negative_regulation"},{"id":"T3044","span":{"begin":177,"end":187},"obj":"Gene_expression"},{"id":"T3045","span":{"begin":198,"end":208},"obj":"Regulation"},{"id":"T3046","span":{"begin":162,"end":171},"obj":"Regulation"}],"relations":[{"id":"R2396","pred":"themeOf","subj":"T3044","obj":"T3046"},{"id":"R2402","pred":"themeOf","subj":"T3034","obj":"T3041"},{"id":"R2403","pred":"themeOf","subj":"T3035","obj":"T3042"},{"id":"R2404","pred":"themeOf","subj":"T3036","obj":"T3043"},{"id":"R2405","pred":"causeOf","subj":"T3037","obj":"T3046"},{"id":"R2406","pred":"themeOf","subj":"T3038","obj":"T3044"},{"id":"R2407","pred":"themeOf","subj":"T3039","obj":"T3045"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1497","span":{"begin":162,"end":171},"obj":"Regulation"},{"id":"T1498","span":{"begin":172,"end":176},"obj":"Protein"},{"id":"T1499","span":{"begin":177,"end":187},"obj":"Gene_expression"},{"id":"T1500","span":{"begin":198,"end":208},"obj":"Regulation"},{"id":"T1501","span":{"begin":212,"end":217},"obj":"Protein"},{"id":"T1502","span":{"begin":245,"end":249},"obj":"Protein"}],"relations":[{"id":"R1127","pred":"themeOf","subj":"T1498","obj":"T1499"},{"id":"R1128","pred":"themeOf","subj":"T1499","obj":"T1497"},{"id":"R1129","pred":"themeOf","subj":"T1501","obj":"T1500"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T2557","span":{"begin":172,"end":176},"obj":"P05231"},{"id":"T2558","span":{"begin":212,"end":217},"obj":"P10145"},{"id":"T2559","span":{"begin":245,"end":249},"obj":"P05412"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}

    test2

    {"project":"test2","denotations":[{"id":"T1434","span":{"begin":162,"end":171},"obj":"Regulation"},{"id":"T1435","span":{"begin":172,"end":176},"obj":"Protein"},{"id":"T1436","span":{"begin":177,"end":187},"obj":"Gene_expression"},{"id":"T1437","span":{"begin":198,"end":208},"obj":"Regulation"},{"id":"T1438","span":{"begin":212,"end":217},"obj":"Protein"},{"id":"T1439","span":{"begin":245,"end":249},"obj":"Protein"}],"relations":[{"id":"R1079","pred":"themeOf","subj":"T1435","obj":"T1436"},{"id":"R1080","pred":"themeOf","subj":"T1436","obj":"T1434"},{"id":"R1081","pred":"themeOf","subj":"T1438","obj":"T1437"}],"text":"Using Jurkat T-cells exposed to PMA and heat killed (HK) Escherichia coli MG1655 in combination with inhibitors of NF-κB, JNK and PKC, we demonstrated that NF-κB regulates IL-6 expression while the regulation of CXCL8 more closely correlated to AP-1 activity."}