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PMC:2889865 / 33-493 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T542 0-2 IN denotes by
T543 3-8 NN denotes NF-κB
T544 9-12 CC denotes and
T545 13-17 NN denotes AP-1
T546 18-20 IN denotes in
T547 21-27 NN denotes Jurkat
T548 28-35 NN denotes T-cells
T549 47-57 NN denotes Background
T550 58-67 NN denotes Activator
T551 68-75 NN denotes protein
T552 76-77 -LRB- denotes (
T553 77-79 NN denotes AP
T554 79-80 -RRB- denotes )
T555 80-82 CD denotes -1
T556 83-86 CC denotes and
T557 87-94 JJ denotes nuclear
T558 95-101 NN denotes factor
T559 102-103 -LRB- denotes (
T560 103-105 NN denotes NF
T561 105-106 -RRB- denotes )
T562 106-109 NN denotes -κB
T563 110-117 RB denotes largely
T564 118-125 VB denotes control
T565 126-132 NN denotes T-cell
T566 133-143 NN denotes activation
T567 143-144 -COMMA- denotes ,
T568 145-154 VB denotes following
T569 155-162 NN denotes binding
T570 163-165 IN denotes of
T571 166-173 JJ denotes foreign
T572 174-182 NN denotes antigens
T573 183-185 TO denotes to
T574 186-189 DT denotes the
T575 190-196 NN denotes T-cell
T576 197-205 NN denotes receptor
T577 206-213 VB denotes leading
T578 214-216 TO denotes to
T579 217-225 NN denotes cytokine
T580 226-235 NN denotes secretion
T581 237-245 JJ denotes Elevated
T582 246-252 NN denotes levels
T583 253-255 IN denotes of
T584 256-272 JJ denotes pro-inflammatory
T585 273-282 NN denotes cytokines
T586 283-286 CC denotes and
T587 287-297 NN denotes chemokines
T588 298-302 JJ denotes such
T589 303-305 IN denotes as
T590 306-309 NN denotes TNF
T591 309-310 -COMMA- denotes ,
T592 311-315 NN denotes IL-6
T593 316-319 CC denotes and
T594 320-325 NN denotes CXCL8
T595 326-329 VB denotes are
T596 330-340 VB denotes associated
T597 341-345 IN denotes with
T598 346-353 JJ denotes several
T599 354-359 JJ denotes human
T600 360-368 NN denotes diseases
T601 369-378 VB denotes including
T602 379-385 JJ denotes cystic
T603 386-394 NN denotes fibrosis
T604 394-395 -COMMA- denotes ,
T605 396-405 JJ denotes pulmonary
T606 406-414 NN denotes fibrosis
T607 415-418 CC denotes and
T608 419-423 NN denotes AIDS
T609 425-428 DT denotes The
T610 429-432 NN denotes aim
T611 433-435 IN denotes of
T612 436-440 DT denotes this
T613 441-446 NN denotes study
T614 447-450 VB denotes was
T615 451-453 TO denotes to
R432 T543 T544 arg1Of NF-κB,and
R433 T544 T542 arg2Of and,by
R434 T545 T544 arg2Of AP-1,and
R435 T548 T546 arg2Of T-cells,in
R436 T548 T547 arg1Of T-cells,Jurkat
R437 T551 T550 arg1Of protein,Activator
R438 T551 T552 arg1Of protein,(
R439 T551 T555 arg1Of protein,-1
R440 T551 T556 arg1Of protein,and
R441 T553 T552 arg2Of AP,(
R442 T554 T552 arg3Of ),(
R443 T556 T564 arg1Of and,control
R444 T560 T559 arg2Of NF,(
R445 T561 T559 arg3Of ),(
R446 T562 T556 arg2Of -κB,and
R447 T562 T557 arg1Of -κB,nuclear
R448 T562 T558 arg1Of -κB,factor
R449 T562 T559 arg1Of -κB,(
R450 T564 T563 arg1Of control,largely
R451 T564 T567 arg1Of control,","
R452 T564 T568 arg1Of control,following
R453 T566 T564 arg2Of activation,control
R454 T566 T565 arg1Of activation,T-cell
R455 T569 T568 arg2Of binding,following
R456 T569 T570 arg1Of binding,of
R457 T569 T573 arg1Of binding,to
R458 T572 T570 arg2Of antigens,of
R459 T572 T571 arg1Of antigens,foreign
R460 T576 T573 arg2Of receptor,to
R461 T576 T574 arg1Of receptor,the
R462 T576 T575 arg1Of receptor,T-cell
R463 T576 T577 arg1Of receptor,leading
R464 T577 T578 arg1Of leading,to
R465 T580 T578 arg2Of secretion,to
R466 T580 T579 arg1Of secretion,cytokine
R467 T582 T581 arg1Of levels,Elevated
R468 T582 T583 arg1Of levels,of
R469 T582 T595 arg1Of levels,are
R470 T582 T596 arg2Of levels,associated
R471 T585 T586 arg1Of cytokines,and
R472 T586 T583 arg2Of and,of
R473 T586 T584 arg1Of and,pro-inflammatory
R474 T586 T589 arg1Of and,as
R475 T587 T586 arg2Of chemokines,and
R476 T589 T588 arg1Of as,such
R477 T590 T591 arg1Of TNF,","
R478 T591 T593 arg1Of ",",and
R479 T592 T591 arg2Of IL-6,","
R480 T593 T589 arg2Of and,as
R481 T594 T593 arg2Of CXCL8,and
R482 T596 T595 arg2Of associated,are
R483 T596 T597 arg1Of associated,with
R484 T600 T597 arg2Of diseases,with
R485 T600 T598 arg1Of diseases,several
R486 T600 T599 arg1Of diseases,human
R487 T600 T601 arg1Of diseases,including
R488 T603 T602 arg1Of fibrosis,cystic
R489 T603 T604 arg1Of fibrosis,","
R490 T604 T607 arg1Of ",",and
R491 T606 T604 arg2Of fibrosis,","
R492 T606 T605 arg1Of fibrosis,pulmonary
R493 T607 T601 arg2Of and,including
R494 T608 T607 arg2Of AIDS,and
R495 T610 T609 arg1Of aim,The
R496 T610 T611 arg1Of aim,of
R497 T610 T614 arg1Of aim,was
R498 T613 T611 arg2Of study,of
R499 T613 T612 arg1Of study,this

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T166 143-144 , denotes ,
T167 145-154 VBG denotes following
T168 155-162 JJ denotes binding
T169 163-165 IN denotes of
T170 166-173 JJ denotes foreign
T171 174-182 NNS denotes antigens
T172 183-185 TO denotes to
T173 186-189 DT denotes the
T174 190-196 NN denotes T-cell
T175 197-205 NN denotes receptor
T176 206-213 VBG denotes leading
T177 214-216 TO denotes to
T178 217-225 VB denotes cytokine
T179 226-235 NN denotes secretion
T180 235-236 . denotes .
T181 237-245 JJ denotes Elevated
T182 246-252 NNS denotes levels
T183 253-255 IN denotes of
T184 256-272 JJ denotes pro-inflammatory
T185 273-282 NNS denotes cytokines
T186 283-286 CC denotes and
T187 287-297 NNS denotes chemokines
T188 298-302 JJ denotes such
T189 303-305 IN denotes as
T190 306-309 NNP denotes TNF
T191 309-310 , denotes ,
T192 311-315 NNP denotes IL-6
T193 316-319 CC denotes and
T194 320-325 NNP denotes CXCL8
T195 326-329 VBP denotes are
T196 330-340 VBN denotes associated
T197 341-345 IN denotes with
T198 346-353 JJ denotes several
T199 354-359 JJ denotes human
T200 360-368 NNS denotes diseases
T201 369-378 VBG denotes including
T202 379-385 JJ denotes cystic
T203 386-394 NN denotes fibrosis
T204 394-395 , denotes ,
T205 396-405 JJ denotes pulmonary
T206 406-414 NN denotes fibrosis
T207 415-418 CC denotes and
T208 419-423 NNP denotes AIDS
T209 423-424 . denotes .
T210 425-428 DT denotes The
T211 429-432 NN denotes aim
T212 433-435 IN denotes of
T213 436-440 DT denotes this
T214 441-446 NN denotes study
T215 447-450 VBD denotes was
T216 451-453 TO denotes to
T140 0-2 IN denotes by
T141 3-8 NNP denotes NF-κB
T142 9-12 CC denotes and
T143 13-17 NNP denotes AP-1
T144 18-20 IN denotes in
T145 21-27 NNP denotes Jurkat
T146 28-35 NNP denotes T-cells
T147 47-57 NNP denotes Background
T148 58-67 NNP denotes Activator
T149 68-75 NN denotes protein
T150 76-77 -LRB- denotes (
T151 77-79 NNP denotes AP
T152 79-80 -RRB- denotes )
T153 80-82 CD denotes -1
T154 83-86 CC denotes and
T155 87-94 JJ denotes nuclear
T156 95-101 NN denotes factor
T157 102-103 -LRB- denotes (
T158 103-105 NNP denotes NF
T159 105-106 -RRB- denotes )
T160 106-107 : denotes -
T161 107-109 NN denotes κB
T162 110-117 RB denotes largely
T163 118-125 JJ denotes control
T164 126-132 NNP denotes T-cell
T165 133-143 NN denotes activation
R58 T168 T167 pobj binding,following
R59 T169 T168 prep of,binding
R60 T170 T171 amod foreign,antigens
R61 T171 T169 pobj antigens,of
R62 T172 T168 prep to,binding
R63 T173 T175 det the,receptor
R56 T166 T165 punct ",",activation
R64 T174 T175 compound T-cell,receptor
R65 T175 T172 pobj receptor,to
R66 T176 T175 acl leading,receptor
R67 T177 T176 prep to,leading
R68 T178 T179 amod cytokine,secretion
R69 T179 T177 pobj secretion,to
R71 T181 T182 amod Elevated,levels
R72 T182 T196 nsubjpass levels,associated
R73 T183 T182 prep of,levels
R74 T184 T185 amod pro-inflammatory,cytokines
R75 T185 T183 pobj cytokines,of
R76 T186 T185 cc and,cytokines
R77 T187 T185 conj chemokines,cytokines
R78 T188 T189 amod such,as
R79 T189 T187 prep as,chemokines
R80 T190 T189 pobj TNF,as
R81 T191 T190 punct ",",TNF
R82 T192 T190 conj IL-6,TNF
R83 T193 T192 cc and,IL-6
R84 T194 T192 conj CXCL8,IL-6
R85 T195 T196 auxpass are,associated
R86 T196 T196 ROOT associated,associated
R87 T197 T196 prep with,associated
R88 T198 T200 amod several,diseases
R89 T199 T200 amod human,diseases
R90 T200 T197 pobj diseases,with
R91 T201 T200 prep including,diseases
R92 T202 T203 amod cystic,fibrosis
R93 T203 T201 pobj fibrosis,including
R94 T204 T203 punct ",",fibrosis
R95 T205 T206 amod pulmonary,fibrosis
R96 T206 T203 conj fibrosis,fibrosis
R97 T207 T206 cc and,fibrosis
R98 T208 T206 conj AIDS,fibrosis
R99 T209 T196 punct .,associated
R100 T210 T211 det The,aim
R101 T211 T215 nsubj aim,was
R102 T212 T211 prep of,aim
R103 T213 T214 det this,study
R104 T214 T212 pobj study,of
R105 T215 T215 ROOT was,was
R962 T142 T141 cc and,NF-κB
R963 T143 T141 conj AP-1,NF-κB
R965 T145 T149 compound Jurkat,protein
R966 T146 T149 compound T-cells,protein
R967 T147 T148 compound Background,Activator
R968 T148 T149 compound Activator,protein
R969 T149 T144 pobj protein,in
R970 T150 T151 punct (,AP
R971 T151 T149 appos AP,protein
R972 T152 T151 punct ),AP
R973 T153 T151 nummod -1,AP
R974 T154 T149 cc and,protein
R975 T155 T156 amod nuclear,factor
R976 T156 T149 conj factor,protein
R977 T157 T158 punct (,NF
R978 T158 T156 appos NF,factor
R979 T159 T158 punct ),NF
R980 T160 T161 punct -,κB
R981 T161 T165 amod κB,activation
R982 T162 T163 advmod largely,control
R983 T163 T165 amod control,activation
R984 T164 T165 compound T-cell,activation
R961 T141 T140 pobj NF-κB,by

GO-BP

Id Subject Object Predicate Lexical cue
T978 126-143 http://purl.obolibrary.org/obo/GO_0051132 denotes T-cell activation
T979 126-143 http://purl.obolibrary.org/obo/GO_0042110 denotes T-cell activation
T980 126-143 http://purl.obolibrary.org/obo/GO_0050798 denotes T-cell activation
T981 126-143 http://purl.obolibrary.org/obo/GO_0050863 denotes T-cell activation
T982 126-143 http://purl.obolibrary.org/obo/GO_1903905 denotes T-cell activation
T983 128-143 http://purl.obolibrary.org/obo/GO_0001775 denotes cell activation
T984 217-235 http://purl.obolibrary.org/obo/GO_0050663 denotes cytokine secretion
T985 226-235 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

GO-MF

Id Subject Object Predicate Lexical cue
T1003 155-162 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T1004 190-205 http://purl.obolibrary.org/obo/GO_0042608 denotes T-cell receptor
T1005 311-315 http://purl.obolibrary.org/obo/GO_0005138 denotes IL-6

GO-CC

Id Subject Object Predicate Lexical cue
T1018 30-35 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1021 190-205 http://purl.obolibrary.org/obo/GO_0042101 denotes T-cell receptor

sentences

Id Subject Object Predicate Lexical cue
T120 47-57 Sentence denotes Background
T121 58-236 Sentence denotes Activator protein (AP)-1 and nuclear factor (NF)-κB largely control T-cell activation, following binding of foreign antigens to the T-cell receptor leading to cytokine secretion.
T122 237-424 Sentence denotes Elevated levels of pro-inflammatory cytokines and chemokines such as TNF, IL-6 and CXCL8 are associated with several human diseases including cystic fibrosis, pulmonary fibrosis and AIDS.
T2 38-46 Sentence denotes Abstract
T3 47-57 Sentence denotes Background
T4 58-236 Sentence denotes Activator protein (AP)-1 and nuclear factor (NF)-κB largely control T-cell activation, following binding of foreign antigens to the T-cell receptor leading to cytokine secretion.
T5 237-424 Sentence denotes Elevated levels of pro-inflammatory cytokines and chemokines such as TNF, IL-6 and CXCL8 are associated with several human diseases including cystic fibrosis, pulmonary fibrosis and AIDS.

ICD10

Id Subject Object Predicate Lexical cue
T1002 379-405 http://purl.bioontology.org/ontology/ICD10/E84.0 denotes cystic fibrosis, pulmonary
T1000 379-394 http://purl.bioontology.org/ontology/ICD10/E84 denotes cystic fibrosis
T1001 379-394 http://purl.bioontology.org/ontology/ICD10/E84.9 denotes cystic fibrosis

events-check-again

Id Subject Object Predicate Lexical cue
T1212 311-315 Protein denotes IL-6
T1213 320-325 Protein denotes CXCL8

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T1252 3-8 Protein denotes NF-κB
T1253 13-17 Protein denotes AP-1
T1254 107-109 Protein denotes κB
T1255 155-162 Binding denotes binding
T1256 306-309 Protein denotes TNF
T1257 311-315 Protein denotes IL-6
T1258 320-325 Protein denotes CXCL8
R898 T1254 T1255 themeOf κB,binding

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T79 311-315 Protein denotes IL-6
T80 320-325 Protein denotes CXCL8

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T928 429-432 P26358 denotes aim
T924 13-17 P05412 denotes AP-1
T925 306-309 P01375 denotes TNF
T926 311-315 P05231 denotes IL-6
T927 320-325 P10145 denotes CXCL8

test2

Id Subject Object Predicate Lexical cue Negation
T41 311-315 Protein denotes IL-6 true
T42 320-325 Protein denotes CXCL8
T43 330-340 Binding denotes associated true
R22 T41 T43 themeOf IL-6,associated
R23 T42 T43 themeOf CXCL8,associated