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PMC:2889865 / 1291-1718 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T746 5-6 -COMMA- denotes ,
T747 7-12 NN denotes NF-κB
T748 13-22 VB denotes responded
T749 23-25 TO denotes to
T750 26-29 NN denotes PMA
T751 30-38 NN denotes exposure
T752 39-41 IN denotes by
T753 42-43 DT denotes a
T754 44-49 JJ denotes rapid
T755 50-63 NN denotes up-regulation
T756 64-72 VB denotes followed
T757 73-75 IN denotes by
T758 76-77 DT denotes a
T759 78-88 JJ denotes subsequent
T760 89-104 NN denotes down-regulation
T761 106-115 VB denotes Increased
T762 116-129 JJ denotes intracellular
T763 130-134 NN denotes Ca2+
T764 135-149 NN denotes concentrations
T765 150-159 VB denotes countered
T766 160-163 DT denotes the
T767 164-179 NN denotes down-regulation
T768 180-182 IN denotes of
T769 183-188 NN denotes NF-κB
T770 189-191 IN denotes by
T771 192-195 NN denotes PMA
T772 195-196 -COMMA- denotes ,
T773 197-202 IN denotes while
T774 203-210 JJ denotes similar
T775 211-220 NN denotes treatment
T776 221-225 IN denotes with
T777 226-233 NN denotes calcium
T778 234-243 NN denotes ionophore
T779 244-252 VB denotes resulted
T780 253-255 IN denotes in
T781 256-257 DT denotes a
T782 258-265 VB denotes reduced
T783 266-271 NN denotes NF-κB
T784 272-280 NN denotes activity
T785 281-290 VB denotes following
T786 291-300 NN denotes induction
T787 301-305 IN denotes with
T788 306-308 NN denotes HK
T789 309-311 FW denotes E.
T790 312-316 FW denotes coli
T791 318-320 IN denotes In
T792 321-326 NN denotes order
T793 327-329 TO denotes to
T794 330-337 JJ denotes further
T795 338-343 NN denotes study
T796 344-349 NN denotes NF-κB
T797 350-360 NN denotes activation
T798 360-361 -COMMA- denotes ,
T799 362-364 PRP denotes we
T800 365-375 VB denotes considered
T801 376-379 CD denotes two
T802 380-389 JJ denotes up-stream
T803 390-400 NN denotes signalling
T804 401-409 NN denotes proteins
T805 409-410 -COMMA- denotes ,
T806 411-414 NN denotes PKC
T807 415-418 CC denotes and
T808 419-424 NN denotes Bcl10
R633 T747 T748 arg1Of NF-κB,responded
R635 T748 T746 arg1Of responded,","
R636 T748 T749 arg1Of responded,to
R637 T748 T752 arg1Of responded,by
R638 T751 T749 arg2Of exposure,to
R639 T751 T750 arg1Of exposure,PMA
R640 T755 T752 arg2Of up-regulation,by
R641 T755 T753 arg1Of up-regulation,a
R642 T755 T754 arg1Of up-regulation,rapid
R643 T755 T756 arg2Of up-regulation,followed
R644 T760 T756 arg1Of down-regulation,followed
R645 T760 T757 arg2Of down-regulation,by
R646 T760 T758 arg1Of down-regulation,a
R647 T760 T759 arg1Of down-regulation,subsequent
R648 T764 T761 arg2Of concentrations,Increased
R649 T764 T762 arg1Of concentrations,intracellular
R650 T764 T763 arg1Of concentrations,Ca2+
R651 T764 T765 arg1Of concentrations,countered
R652 T765 T772 arg1Of countered,","
R653 T765 T773 arg1Of countered,while
R654 T767 T765 arg2Of down-regulation,countered
R655 T767 T766 arg1Of down-regulation,the
R656 T767 T768 arg1Of down-regulation,of
R657 T767 T770 arg1Of down-regulation,by
R658 T769 T768 arg2Of NF-κB,of
R659 T771 T770 arg2Of PMA,by
R660 T775 T774 arg1Of treatment,similar
R661 T775 T776 arg1Of treatment,with
R662 T775 T779 arg1Of treatment,resulted
R663 T778 T776 arg2Of ionophore,with
R664 T778 T777 arg1Of ionophore,calcium
R665 T779 T773 arg2Of resulted,while
R666 T779 T780 arg1Of resulted,in
R667 T784 T780 arg2Of activity,in
R668 T784 T781 arg1Of activity,a
R669 T784 T782 arg2Of activity,reduced
R670 T784 T783 arg1Of activity,NF-κB
R671 T784 T785 arg1Of activity,following
R672 T786 T785 arg2Of induction,following
R673 T786 T787 arg1Of induction,with
R674 T790 T787 arg2Of coli,with
R675 T790 T788 arg1Of coli,HK
R676 T790 T789 arg1Of coli,E.
R677 T791 T793 arg1Of In,to
R678 T792 T791 arg2Of order,In
R679 T797 T791 arg3Of activation,In
R680 T797 T794 arg1Of activation,further
R681 T797 T795 arg1Of activation,study
R682 T797 T796 arg1Of activation,NF-κB
R683 T799 T800 arg1Of we,considered
R684 T800 T791 arg1Of considered,In
R685 T800 T798 arg1Of considered,","
R686 T804 T800 arg2Of proteins,considered
R687 T804 T801 arg1Of proteins,two
R688 T804 T802 arg1Of proteins,up-stream
R689 T804 T803 arg1Of proteins,signalling
R690 T804 T805 arg1Of proteins,","
R691 T806 T807 arg1Of PKC,and
R692 T807 T805 arg2Of and,","
R693 T808 T807 arg2Of Bcl10,and

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T352 5-6 , denotes ,
T353 7-12 NNP denotes NF-κB
T354 13-22 VBD denotes responded
T355 23-25 TO denotes to
T356 26-29 NNP denotes PMA
T357 30-38 NN denotes exposure
T358 189-191 IN denotes by
T359 39-41 IN denotes by
T360 42-43 DT denotes a
T361 44-49 JJ denotes rapid
T362 50-63 NN denotes up-regulation
T363 64-72 VBN denotes followed
T364 73-75 IN denotes by
T365 76-77 DT denotes a
T366 78-88 JJ denotes subsequent
T367 89-104 NN denotes down-regulation
T368 104-105 . denotes .
T369 106-115 VBN denotes Increased
T370 116-129 JJ denotes intracellular
T371 130-133 NNP denotes Ca2
T372 133-134 NN denotes +
T373 135-149 NNS denotes concentrations
T374 150-159 VBD denotes countered
T375 160-163 DT denotes the
T376 164-179 NN denotes down-regulation
T377 180-182 IN denotes of
T378 183-188 NN denotes NF-κB
T379 192-195 NNP denotes PMA
T380 195-196 , denotes ,
T381 197-202 IN denotes while
T382 203-210 JJ denotes similar
T383 211-220 NN denotes treatment
T384 221-225 IN denotes with
T385 226-233 NN denotes calcium
T386 234-243 NN denotes ionophore
T387 244-252 VBD denotes resulted
T388 253-255 IN denotes in
T389 256-257 DT denotes a
T390 258-265 VBN denotes reduced
T391 266-271 NN denotes NF-κB
T392 272-280 NN denotes activity
T393 281-290 VBG denotes following
T394 291-300 NN denotes induction
T395 301-305 IN denotes with
T396 306-308 NNP denotes HK
T397 309-311 NNP denotes E.
T398 312-316 NNS denotes coli
T399 316-317 . denotes .
T400 318-320 IN denotes In
T401 321-326 NN denotes order
T402 327-329 TO denotes to
T403 330-337 JJ denotes further
T404 338-343 NN denotes study
T405 344-349 NN denotes NF-κB
T406 350-360 NN denotes activation
T407 360-361 , denotes ,
T408 362-364 PRP denotes we
T409 365-375 VBD denotes considered
T410 376-379 CD denotes two
T411 380-389 JJ denotes up-stream
T412 390-400 JJ denotes signalling
T413 401-409 NNS denotes proteins
T414 409-410 , denotes ,
T415 411-414 NNP denotes PKC
T416 415-418 CC denotes and
T417 419-424 NNP denotes Bcl10
T418 424-425 . denotes .
R242 T352 T354 punct ",",responded
R243 T353 T354 nsubj NF-κB,responded
R244 T354 T354 ROOT responded,responded
R245 T355 T354 prep to,responded
R246 T356 T357 compound PMA,exposure
R247 T357 T355 pobj exposure,to
R248 T358 T376 prep by,down-regulation
R249 T359 T357 prep by,exposure
R250 T360 T362 det a,up-regulation
R251 T361 T362 amod rapid,up-regulation
R252 T362 T359 pobj up-regulation,by
R253 T363 T357 acl followed,exposure
R254 T364 T363 agent by,followed
R255 T365 T367 det a,down-regulation
R256 T366 T367 amod subsequent,down-regulation
R257 T367 T364 pobj down-regulation,by
R258 T368 T354 punct .,responded
R259 T369 T373 amod Increased,concentrations
R260 T370 T373 amod intracellular,concentrations
R261 T371 T373 compound Ca2,concentrations
R262 T372 T373 compound +,concentrations
R263 T373 T374 nsubj concentrations,countered
R264 T374 T374 ROOT countered,countered
R265 T375 T376 det the,down-regulation
R266 T376 T374 dobj down-regulation,countered
R267 T377 T376 prep of,down-regulation
R268 T378 T377 pobj NF-κB,of
R269 T379 T358 pobj PMA,by
R270 T380 T374 punct ",",countered
R271 T381 T387 mark while,resulted
R272 T382 T383 amod similar,treatment
R273 T383 T387 nsubj treatment,resulted
R274 T384 T383 prep with,treatment
R275 T385 T386 compound calcium,ionophore
R276 T386 T384 pobj ionophore,with
R277 T387 T374 advcl resulted,countered
R278 T388 T387 prep in,resulted
R279 T389 T392 det a,activity
R280 T390 T392 amod reduced,activity
R281 T391 T392 compound NF-κB,activity
R282 T392 T388 pobj activity,in
R283 T393 T392 acl following,activity
R284 T394 T393 pobj induction,following
R285 T395 T394 prep with,induction
R286 T396 T398 compound HK,coli
R287 T397 T398 compound E.,coli
R288 T398 T395 pobj coli,with
R289 T399 T374 punct .,countered
R290 T400 T409 prep In,considered
R291 T401 T400 pobj order,In
R292 T402 T404 aux to,study
R293 T403 T404 advmod further,study
R294 T404 T409 advcl study,considered
R295 T405 T406 compound NF-κB,activation
R296 T406 T404 dobj activation,study
R297 T407 T409 punct ",",considered
R298 T408 T409 nsubj we,considered
R299 T409 T409 ROOT considered,considered
R300 T410 T413 nummod two,proteins
R301 T411 T413 amod up-stream,proteins
R302 T412 T413 amod signalling,proteins
R303 T413 T409 dobj proteins,considered
R304 T414 T413 punct ",",proteins
R305 T415 T413 appos PKC,proteins
R306 T416 T415 cc and,PKC
R307 T417 T415 conj Bcl10,PKC
R308 T418 T409 punct .,considered

GO-BP

Id Subject Object Predicate Lexical cue
T974 53-63 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T975 94-104 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T976 169-179 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T988 234-243 http://purl.obolibrary.org/obo/GO_0022809 denotes ionophore
T989 344-360 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation
T991 390-400 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T993 411-414 http://purl.obolibrary.org/obo/GO_0004697 denotes PKC

GO-MF

Id Subject Object Predicate Lexical cue
T1013 234-243 http://purl.obolibrary.org/obo/GO_0022809 denotes ionophore
T1014 411-414 http://purl.obolibrary.org/obo/GO_0004697 denotes PKC

GO-CC

Id Subject Object Predicate Lexical cue
T1022 116-129 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T129 106-317 Sentence denotes Increased intracellular Ca2+ concentrations countered the down-regulation of NF-κB by PMA, while similar treatment with calcium ionophore resulted in a reduced NF-κB activity following induction with HK E. coli.
T130 318-425 Sentence denotes In order to further study NF-κB activation, we considered two up-stream signalling proteins, PKC and Bcl10.
T12 106-317 Sentence denotes Increased intracellular Ca2+ concentrations countered the down-regulation of NF-κB by PMA, while similar treatment with calcium ionophore resulted in a reduced NF-κB activity following induction with HK E. coli.
T13 318-425 Sentence denotes In order to further study NF-κB activation, we considered two up-stream signalling proteins, PKC and Bcl10.

events-check-again

Id Subject Object Predicate Lexical cue
T1229 419-424 Protein denotes Bcl10

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T1292 7-12 Protein denotes NF-κB
T1293 50-63 Positive_regulation denotes up-regulation
T1294 89-104 Negative_regulation denotes down-regulation
T1295 50-63 Positive_regulation denotes up-regulation
T1296 183-188 Protein denotes NF-κB
T1297 266-271 Protein denotes NF-κB
T1298 306-316 Protein denotes HK E. coli
T1299 164-179 Negative_regulation denotes down-regulation
T1300 291-300 Positive_regulation denotes induction
T1301 258-265 Negative_regulation denotes reduced
T1302 347-349 Protein denotes κB
T1303 411-414 Protein denotes PKC
T1304 419-424 Protein denotes Bcl10
T1305 350-360 Positive_regulation denotes activation
R920 T1292 T1293 themeOf NF-κB,up-regulation
R921 T1293 T1294 themeOf up-regulation,down-regulation
R922 T1294 T1295 themeOf down-regulation,up-regulation
R923 T1296 T1299 themeOf NF-κB,down-regulation
R924 T1298 T1300 themeOf HK E. coli,induction
R925 T1300 T1301 themeOf induction,reduced
R926 T1302 T1305 themeOf κB,activation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T96 419-424 Protein denotes Bcl10

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T940 419-424 O95999 denotes Bcl10

test2

Id Subject Object Predicate Lexical cue
T56 419-424 Protein denotes Bcl10