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PMC:2817507 / 17551-17798 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7499 241-246 NN denotes brain
T7498 237-240 NN denotes IHC
T7497 234-236 IN denotes in
T7496 224-233 NN denotes responses
T7495 211-223 JJ denotes inflammatory
T7494 207-210 DT denotes the
T7493 198-206 VB denotes initiate
T7492 194-197 CC denotes and
T7491 192-193 -COMMA- denotes ,
T7490 183-192 NN denotes signaling
T7489 178-182 NN denotes NFκB
T7488 164-177 JJ denotes TLR4-mediated
T7487 155-163 VB denotes activate
T7486 153-154 -COMMA- denotes ,
T7485 146-153 NN denotes ligands
T7484 141-145 NN denotes TLR4
T7483 130-140 JJ denotes endogenous
T7482 127-129 IN denotes as
T7481 120-126 NN denotes server
T7480 113-119 NN denotes plasma
T7479 110-112 IN denotes of
T7478 97-109 NN denotes constituents
T7477 93-96 CC denotes and
T7476 87-92 NN denotes cells
T7475 81-86 NN denotes blood
T7474 76-80 IN denotes from
T7473 71-75 VB denotes came
T7472 68-70 CC denotes or
T7471 62-67 NN denotes brain
T7470 54-61 VB denotes damaged
T7469 51-53 IN denotes in
T7468 42-50 VB denotes produced
T7467 32-41 NN denotes molecules
T7466 26-31 DT denotes these
T7465 21-25 IN denotes that
T7464 10-20 VB denotes speculated
T7463 7-9 VB denotes be
T7462 3-6 MD denotes may
T7461 0-2 PRP denotes It
R5661 T7467 T7466 arg1Of molecules,these
R5662 T7467 T7468 arg2Of molecules,produced
R5663 T7467 T7473 arg1Of molecules,came
R5664 T7467 T7487 arg1Of molecules,activate
R5665 T7468 T7469 arg1Of produced,in
R5666 T7471 T7469 arg2Of brain,in
R5667 T7471 T7470 arg2Of brain,damaged
R5668 T7471 T7472 arg1Of brain,or
R5669 T7473 T7474 arg1Of came,from
R5670 T7473 T7482 arg1Of came,as
R5671 T7473 T7486 arg1Of came,","
R5672 T7476 T7475 arg1Of cells,blood
R5673 T7476 T7477 arg1Of cells,and
R5674 T7477 T7474 arg2Of and,from
R5675 T7478 T7477 arg2Of constituents,and
R5676 T7478 T7479 arg1Of constituents,of
R5677 T7481 T7479 arg2Of server,of
R5678 T7481 T7480 arg1Of server,plasma
R5679 T7485 T7482 arg2Of ligands,as
R5680 T7485 T7483 arg1Of ligands,endogenous
R5681 T7485 T7484 arg1Of ligands,TLR4
R5682 T7486 T7464 arg2Of ",",speculated
R5683 T7486 T7465 arg1Of ",",that
R5684 T7487 T7486 arg2Of activate,","
R5685 T7490 T7487 arg2Of signaling,activate
R5686 T7490 T7488 arg1Of signaling,TLR4-mediated
R5687 T7490 T7489 arg1Of signaling,NFκB
R5688 T7492 T7491 arg1Of and,","
R5689 T7493 T7492 arg2Of initiate,and
R5690 T7496 T7493 arg2Of responses,initiate
R5691 T7496 T7494 arg1Of responses,the
R5692 T7496 T7495 arg1Of responses,inflammatory
R5693 T7496 T7497 arg1Of responses,in
R5694 T7499 T7497 arg2Of brain,in
R5695 T7499 T7498 arg1Of brain,IHC

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T6288 26-41 Anaphor denotes these molecules

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T6309 164-168 Protein denotes TLR4
T6308 141-145 Protein denotes TLR4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T8664 164-168 http://www.uniprot.org/uniprot/O00206 denotes TLR4
T8663 141-145 http://www.uniprot.org/uniprot/O00206 denotes TLR4

UBERON-AE

Id Subject Object Predicate Lexical cue
T6189 81-86 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T6174 241-246 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T6173 62-67 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain

GO-BP

Id Subject Object Predicate Lexical cue
T6350 183-192 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T6397 146-153 http://purl.obolibrary.org/obo/GO_0005488 denotes ligands

GO-CC

Id Subject Object Predicate Lexical cue
T6404 87-92 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T6229 0-247 Sentence denotes It may be speculated that these molecules produced in damaged brain or came from blood cells and constituents of plasma server as endogenous TLR4 ligands, activate TLR4-mediated NFκB signaling, and initiate the inflammatory responses in IHC brain.
T163 0-247 Sentence denotes It may be speculated that these molecules produced in damaged brain or came from blood cells and constituents of plasma server as endogenous TLR4 ligands, activate TLR4-mediated NFκB signaling, and initiate the inflammatory responses in IHC brain.

simple1

Id Subject Object Predicate Lexical cue
T6543 164-168 Protein denotes TLR4
T6542 141-145 Protein denotes TLR4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8920 164-168 Protein denotes TLR4
T8919 141-145 Protein denotes TLR4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8707 146-153 Binding denotes ligands
T8690 164-168 Protein denotes TLR4
T8689 141-145 Protein denotes TLR4
R6862 T8689 T8707 themeOf TLR4,ligands

DLUT931

Id Subject Object Predicate Lexical cue
T8728 164-168 Protein denotes TLR4
T8727 141-145 Protein denotes TLR4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9009 26-67 Entity denotes these molecules produced in damaged brain
T9004 130-193 Entity denotes endogenous TLR4 ligands, activate TLR4-mediated NFκB signaling,
T8886 164-192 Positive_regulation denotes TLR4-mediated NFκB signaling
T8892 164-192 Regulation denotes TLR4-mediated NFκB signaling
T8997 141-145 Protein denotes TLR4
T8988 81-92 Entity denotes blood cells
T8973 164-177 Protein denotes TLR4-mediated
T8963 178-182 Protein denotes NFκB
R6977 T8963 T8886 causeOf NFκB,TLR4-mediated NFκB signaling
R6979 T8973 T8892 causeOf TLR4-mediated,TLR4-mediated NFκB signaling
R6946 T8886 T8892 themeOf TLR4-mediated NFκB signaling,TLR4-mediated NFκB signaling

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8568 246-247 . denotes .
T8567 241-246 NN denotes brain
T8566 237-240 NNP denotes IHC
T8565 234-236 IN denotes in
T8564 224-233 NNS denotes responses
T8563 211-223 JJ denotes inflammatory
T8562 207-210 DT denotes the
T8561 198-206 VB denotes initiate
T8560 194-197 CC denotes and
T8559 192-193 , denotes ,
T8558 183-192 VBG denotes signaling
T8557 178-182 NNP denotes NFκB
T8556 164-177 JJ denotes TLR4-mediated
T8555 155-163 VBP denotes activate
T8554 153-154 , denotes ,
T8553 146-153 NNS denotes ligands
T8552 141-145 CD denotes TLR4
T8551 130-140 JJ denotes endogenous
T8550 127-129 IN denotes as
T8549 120-126 NN denotes server
T8548 113-119 NN denotes plasma
T8547 110-112 IN denotes of
T8546 97-109 NNS denotes constituents
T8545 93-96 CC denotes and
T8544 87-92 NNS denotes cells
T8543 81-86 NN denotes blood
T8542 76-80 IN denotes from
T8541 71-75 VBD denotes came
T8540 68-70 CC denotes or
T8539 62-67 NN denotes brain
T8538 54-61 JJ denotes damaged
T8537 51-53 IN denotes in
T8536 42-50 VBN denotes produced
T8535 32-41 NNS denotes molecules
T8534 26-31 DT denotes these
T8533 21-25 IN denotes that
T8532 10-20 VBN denotes speculated
T8531 7-9 VB denotes be
T8530 3-6 MD denotes may
T8529 0-2 PRP denotes It
R6675 T8543 T8544 compound blood,cells
R6677 T8544 T8542 pobj cells,from
R6678 T8545 T8544 cc and,cells
R6680 T8546 T8544 conj constituents,cells
R6681 T8547 T8544 prep of,cells
R6682 T8548 T8549 compound plasma,server
R6684 T8549 T8547 pobj server,of
R6685 T8550 T8541 prep as,came
R6686 T8551 T8553 amod endogenous,ligands
R6688 T8552 T8553 nummod TLR4,ligands
R6689 T8553 T8550 pobj ligands,as
R6690 T8554 T8541 punct ",",came
R6692 T8555 T8532 conj activate,speculated
R6693 T8556 T8557 compound TLR4-mediated,NFκB
R6694 T8557 T8558 nsubj NFκB,signaling
R6696 T8558 T8555 ccomp signaling,activate
R6697 T8559 T8558 punct ",",signaling
R6699 T8560 T8555 cc and,activate
R6700 T8561 T8555 conj initiate,activate
R6701 T8562 T8564 det the,responses
R6703 T8563 T8564 amod inflammatory,responses
R6704 T8564 T8561 dobj responses,initiate
R6705 T8565 T8564 prep in,responses
R6707 T8566 T8567 compound IHC,brain
R6708 T8567 T8565 pobj brain,in
R6709 T8568 T8532 punct .,speculated
R6834 T8529 T8532 nsubjpass It,speculated
R6835 T8530 T8532 aux may,speculated
R6836 T8531 T8532 auxpass be,speculated
R6837 T8532 T8532 ROOT speculated,speculated
R6838 T8533 T8541 mark that,came
R6839 T8534 T8535 det these,molecules
R6840 T8535 T8541 nsubj molecules,came
R6841 T8536 T8535 acl produced,molecules
R6842 T8537 T8536 prep in,produced
R6843 T8538 T8539 amod damaged,brain
R6844 T8539 T8537 pobj brain,in
R6845 T8540 T8536 cc or,produced
R6848 T8541 T8532 ccomp came,speculated
R6850 T8542 T8541 prep from,came

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T6493 178-182 Protein denotes NFκB
T6492 164-168 Protein denotes TLR4
T6491 141-145 Protein denotes TLR4

testone

Id Subject Object Predicate Lexical cue
T6077 164-168 Protein denotes TLR4
T6076 141-145 Protein denotes TLR4

test3

Id Subject Object Predicate Lexical cue
T6156 164-168 Protein denotes TLR4
T6155 141-145 Protein denotes TLR4
T6118 164-168 Protein denotes TLR4
T6117 141-145 Protein denotes TLR4