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PMC:2806624 / 8574-8740 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4006 0-3 DT denotes The
T4007 4-9 NN denotes level
T4008 10-12 IN denotes of
T4009 13-18 NN denotes FOXP3
T4010 19-23 NN denotes mRNA
T4011 24-27 VB denotes was
T4012 28-35 RB denotes further
T4013 36-43 VB denotes reduced
T4014 44-48 WRB denotes when
T4015 49-53 CC denotes both
T4016 54-59 NN denotes RUNX1
T4017 60-63 CC denotes and
T4018 64-69 NN denotes RUNX3
T4019 70-74 VB denotes were
T4020 75-82 VB denotes knocked
T4021 83-87 RB denotes down
T4022 88-90 IN denotes in
T4023 91-96 JJ denotes naive
T4024 97-101 JJ denotes CD4+
T4025 102-103 NN denotes T
T4026 104-109 NN denotes cells
T4027 110-116 IN denotes during
T4028 117-122 PRP-DOLLAR- denotes their
T4029 123-138 NN denotes differentiation
T4030 139-141 TO denotes to
T4031 142-144 NN denotes iT
T4032 145-148 NN denotes reg
T4033 149-154 NN denotes cells
T4034 155-156 -LRB- denotes (
T4035 156-160 NN denotes Fig.
T4036 161-162 CD denotes 1
T4037 163-164 NN denotes B
T4038 164-165 -RRB- denotes )
R3108 T4007 T4006 arg1Of level,The
R3109 T4007 T4008 arg1Of level,of
R3110 T4007 T4011 arg1Of level,was
R3111 T4007 T4013 arg2Of level,reduced
R3112 T4010 T4008 arg2Of mRNA,of
R3113 T4010 T4009 arg1Of mRNA,FOXP3
R3114 T4013 T4011 arg2Of reduced,was
R3115 T4013 T4012 arg1Of reduced,further
R3116 T4013 T4014 arg1Of reduced,when
R3117 T4016 T4017 arg1Of RUNX1,and
R3118 T4017 T4015 arg1Of and,both
R3119 T4017 T4019 arg1Of and,were
R3120 T4017 T4020 arg2Of and,knocked
R3121 T4018 T4017 arg2Of RUNX3,and
R3122 T4020 T4014 arg2Of knocked,when
R3123 T4020 T4019 arg2Of knocked,were
R3124 T4020 T4021 arg1Of knocked,down
R3125 T4020 T4022 arg1Of knocked,in
R3126 T4020 T4027 arg1Of knocked,during
R3127 T4026 T4022 arg2Of cells,in
R3128 T4026 T4023 arg1Of cells,naive
R3129 T4026 T4024 arg1Of cells,CD4+
R3130 T4026 T4025 arg1Of cells,T
R3131 T4029 T4027 arg2Of differentiation,during
R3132 T4029 T4028 arg1Of differentiation,their
R3133 T4029 T4030 arg1Of differentiation,to
R3134 T4033 T4030 arg2Of cells,to
R3135 T4033 T4031 arg1Of cells,iT
R3136 T4033 T4032 arg1Of cells,reg
R3137 T4033 T4034 arg1Of cells,(
R3138 T4037 T4034 arg2Of B,(
R3139 T4037 T4035 arg1Of B,Fig.
R3140 T4037 T4036 arg1Of B,1
R3141 T4038 T4034 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4783 0-3 DT denotes The
T4784 4-9 NN denotes level
T4785 10-12 IN denotes of
T4786 13-18 CD denotes FOXP3
T4787 19-23 NNP denotes mRNA
T4788 24-27 VBD denotes was
T4789 28-35 JJ denotes further
T4790 36-43 VBN denotes reduced
T4791 44-48 WRB denotes when
T4792 49-53 DT denotes both
T4793 54-59 CD denotes RUNX1
T4794 60-63 CC denotes and
T4795 64-69 CD denotes RUNX3
T4796 70-74 VBD denotes were
T4797 75-82 VBN denotes knocked
T4798 83-87 RB denotes down
T4799 88-90 IN denotes in
T4800 91-96 JJ denotes naive
T4801 97-100 NNP denotes CD4
T4802 100-101 CD denotes +
T4803 102-103 NNP denotes T
T4804 104-109 NNS denotes cells
T4805 110-116 IN denotes during
T4806 117-122 PRP$ denotes their
T4807 123-138 NN denotes differentiation
T4808 139-141 TO denotes to
T4809 142-144 VB denotes iT
T4810 145-148 NN denotes reg
T4811 149-154 NNS denotes cells
T4812 155-156 -LRB- denotes (
T4813 156-160 NNP denotes Fig.
T4814 161-162 CD denotes 1
T4815 163-164 NNP denotes B
T4816 164-165 -RRB- denotes )
T4817 165-166 . denotes .
R3743 T4783 T4784 det The,level
R3744 T4784 T4790 nsubjpass level,reduced
R3745 T4785 T4784 prep of,level
R3747 T4786 T4787 nummod FOXP3,mRNA
R3748 T4787 T4785 pobj mRNA,of
R3749 T4788 T4790 auxpass was,reduced
R3751 T4789 T4790 advmod further,reduced
R3752 T4790 T4790 ROOT reduced,reduced
R3753 T4791 T4797 advmod when,knocked
R3755 T4792 T4793 det both,RUNX1
R3756 T4793 T4797 nsubjpass RUNX1,knocked
R3757 T4794 T4793 cc and,RUNX1
R3759 T4795 T4793 conj RUNX3,RUNX1
R3760 T4796 T4797 auxpass were,knocked
R3761 T4797 T4790 advcl knocked,reduced
R3762 T4798 T4797 advmod down,knocked
R3763 T4799 T4797 prep in,knocked
R3764 T4800 T4804 amod naive,cells
R3765 T4801 T4804 compound CD4,cells
R3767 T4802 T4804 nummod +,cells
R3768 T4803 T4804 compound T,cells
R3769 T4804 T4799 pobj cells,in
R3771 T4805 T4797 prep during,knocked
R3772 T4806 T4807 poss their,differentiation
R3773 T4807 T4805 pobj differentiation,during
R3776 T4808 T4809 aux to,iT
R3778 T4809 T4797 advcl iT,knocked
R3779 T4810 T4811 compound reg,cells
R3780 T4811 T4809 dobj cells,iT
R3782 T4812 T4815 punct (,B
R3783 T4813 T4815 nmod Fig.,B
R3784 T4814 T4815 nummod 1,B
R3786 T4815 T4797 npadvmod B,knocked
R3787 T4816 T4815 punct ),B
R3789 T4817 T4790 punct .,reduced

sentences

Id Subject Object Predicate Lexical cue
T3610 0-166 Sentence denotes The level of FOXP3 mRNA was further reduced when both RUNX1 and RUNX3 were knocked down in naive CD4+ T cells during their differentiation to iT reg cells (Fig. 1 B).
T56 0-166 Sentence denotes The level of FOXP3 mRNA was further reduced when both RUNX1 and RUNX3 were knocked down in naive CD4+ T cells during their differentiation to iT reg cells (Fig. 1 B).

events-check-again

Id Subject Object Predicate Lexical cue
T5532 13-18 Protein denotes FOXP3
T5533 19-23 Transcription denotes mRNA
T5534 36-43 Negative_regulation denotes reduced
T5535 36-43 Negative_regulation denotes reduced
T5536 54-59 Protein denotes RUNX1
T5537 64-69 Protein denotes RUNX3
T5538 75-87 Negative_regulation denotes knocked down
T5539 75-87 Negative_regulation denotes knocked down
T5540 97-100 Protein denotes CD4
R4422 T5532 T5533 themeOf FOXP3,mRNA
R4423 T5533 T5534 themeOf mRNA,reduced
R4424 T5533 T5535 themeOf mRNA,reduced
R4426 T5536 T5538 themeOf RUNX1,knocked down
R4427 T5537 T5539 themeOf RUNX3,knocked down
R4428 T5538 T5534 causeOf knocked down,reduced
R4429 T5539 T5535 causeOf knocked down,reduced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3643 19-23 Transcription denotes mRNA
T3644 36-43 Negative_regulation denotes reduced
T3645 75-87 Negative_regulation denotes knocked down
T3646 36-43 Negative_regulation denotes reduced
T3647 75-87 Negative_regulation denotes knocked down
T3742 13-18 Protein denotes FOXP3
T3743 54-59 Protein denotes RUNX1
T3744 64-69 Protein denotes RUNX3
T3745 97-100 Protein denotes CD4
R2788 T3643 T3646 themeOf mRNA,reduced
R2790 T3647 T3646 causeOf knocked down,reduced
R2860 T3742 T3643 themeOf FOXP3,mRNA
R2861 T3743 T3645 themeOf RUNX1,knocked down
R2862 T3744 T3647 themeOf RUNX3,knocked down
R2787 T3643 T3644 themeOf mRNA,reduced
R2789 T3645 T3644 causeOf knocked down,reduced

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4487 13-18 Q9BZS1 denotes FOXP3
T4488 54-59 Q01196 denotes RUNX1
T4489 64-69 Q13761 denotes RUNX3
T4490 97-100 P01730 denotes CD4

test2

Id Subject Object Predicate Lexical cue Speculation
T3512 13-18 Protein denotes FOXP3
T3513 36-43 Negative_regulation denotes reduced true
T3514 54-59 Protein denotes RUNX1
T3515 64-69 Protein denotes RUNX3
T3516 75-87 Negative_regulation denotes knocked down
T3517 97-100 Protein denotes CD4
R2740 T3514 T3516 themeOf RUNX1,knocked down
R2741 T3515 T3516 themeOf RUNX3,knocked down
R2742 T3516 T3513 causeOf knocked down,reduced