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PMC:2806624 / 8234-8392 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3948 0-2 TO denotes To
T3949 3-7 VB denotes test
T3950 8-12 DT denotes this
T3951 13-23 NN denotes hypothesis
T3952 23-24 -COMMA- denotes ,
T3953 25-30 NN denotes RUNX1
T3954 31-34 CC denotes and
T3955 35-40 NN denotes RUNX3
T3956 41-51 NN denotes expression
T3957 52-55 VB denotes was
T3958 56-63 VB denotes knocked
T3959 64-68 RB denotes down
T3960 69-71 IN denotes in
T3961 72-77 JJ denotes human
T3962 78-83 JJ denotes naive
T3963 84-88 JJ denotes CD4+
T3964 89-90 NN denotes T
T3965 91-96 NN denotes cells
T3966 97-99 IN denotes by
T3967 100-112 NN denotes transfection
T3968 113-115 IN denotes of
T3969 116-121 JJ denotes small
T3970 122-133 VB denotes interfering
T3971 134-138 NN denotes RNAs
T3972 139-140 -LRB- denotes (
T3973 140-146 NN denotes siRNAs
T3974 146-147 -COLON- denotes ;
T3975 148-152 NNP denotes Fig.
T3976 153-154 CD denotes 1
T3977 155-156 NN denotes B
T3978 156-157 -RRB- denotes )
R3049 T3949 T3948 arg1Of test,To
R3050 T3951 T3949 arg2Of hypothesis,test
R3051 T3951 T3950 arg1Of hypothesis,this
R3052 T3953 T3954 arg1Of RUNX1,and
R3053 T3955 T3954 arg2Of RUNX3,and
R3054 T3956 T3949 arg1Of expression,test
R3055 T3956 T3953 arg1Of expression,RUNX1
R3056 T3956 T3955 arg1Of expression,RUNX3
R3057 T3956 T3957 arg1Of expression,was
R3058 T3956 T3958 arg2Of expression,knocked
R3059 T3958 T3948 modOf knocked,To
R3060 T3958 T3952 arg1Of knocked,","
R3061 T3958 T3957 arg2Of knocked,was
R3062 T3958 T3959 arg1Of knocked,down
R3063 T3958 T3960 arg1Of knocked,in
R3064 T3965 T3960 arg2Of cells,in
R3065 T3965 T3961 arg1Of cells,human
R3066 T3965 T3962 arg1Of cells,naive
R3067 T3965 T3963 arg1Of cells,CD4+
R3068 T3965 T3964 arg1Of cells,T
R3069 T3967 T3958 arg1Of transfection,knocked
R3070 T3967 T3966 arg2Of transfection,by
R3071 T3967 T3968 arg1Of transfection,of
R3072 T3971 T3968 arg2Of RNAs,of
R3073 T3971 T3969 arg1Of RNAs,small
R3074 T3971 T3970 arg1Of RNAs,interfering
R3075 T3971 T3972 arg1Of RNAs,(
R3076 T3973 T3972 arg2Of siRNAs,(
R3077 T3973 T3974 arg1Of siRNAs,;
R3078 T3975 T3976 arg1Of Fig.,1
R3079 T3977 T3974 arg2Of B,;
R3080 T3977 T3975 arg1Of B,Fig.
R3081 T3978 T3972 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4720 0-2 TO denotes To
T4721 3-7 VB denotes test
T4722 8-12 DT denotes this
T4723 13-23 NN denotes hypothesis
T4724 23-24 , denotes ,
T4725 25-30 NNP denotes RUNX1
T4726 31-34 CC denotes and
T4727 35-40 NNP denotes RUNX3
T4728 41-51 NN denotes expression
T4729 52-55 VBD denotes was
T4730 56-63 VBN denotes knocked
T4731 64-68 RB denotes down
T4732 69-71 IN denotes in
T4733 72-77 JJ denotes human
T4734 78-83 JJ denotes naive
T4735 84-87 NNP denotes CD4
T4736 87-88 CD denotes +
T4737 89-90 NNP denotes T
T4738 91-96 NNS denotes cells
T4739 97-99 IN denotes by
T4740 100-112 NN denotes transfection
T4741 113-115 IN denotes of
T4742 116-121 JJ denotes small
T4743 122-133 VBG denotes interfering
T4744 134-138 NNS denotes RNAs
T4745 139-140 -LRB- denotes (
T4746 140-146 NNS denotes siRNAs
T4747 146-147 : denotes ;
T4748 148-152 NNP denotes Fig.
T4749 153-154 CD denotes 1
T4750 155-156 NNP denotes B
T4751 156-157 -RRB- denotes )
T4752 157-158 . denotes .
R3670 T4729 T4730 auxpass was,knocked
R3671 T4730 T4748 ccomp knocked,Fig.
R3673 T4731 T4730 prt down,knocked
R3674 T4732 T4730 prep in,knocked
R3676 T4733 T4734 npadvmod human,naive
R3677 T4734 T4738 amod naive,cells
R3678 T4735 T4738 compound CD4,cells
R3680 T4736 T4738 nummod +,cells
R3681 T4737 T4738 compound T,cells
R3682 T4738 T4732 pobj cells,in
R3684 T4739 T4730 agent by,knocked
R3685 T4740 T4739 pobj transfection,by
R3687 T4741 T4740 prep of,transfection
R3688 T4742 T4744 amod small,RNAs
R3689 T4743 T4744 amod interfering,RNAs
R3691 T4744 T4741 pobj RNAs,of
R3692 T4745 T4740 punct (,transfection
R3693 T4746 T4748 dep siRNAs,Fig.
R3695 T4747 T4748 punct ;,Fig.
R3696 T4748 T4748 ROOT Fig.,Fig.
R3697 T4749 T4750 nummod 1,B
R3698 T4750 T4748 appos B,Fig.
R3700 T4751 T4748 punct ),Fig.
R3701 T4752 T4748 punct .,Fig.
R3659 T4722 T4723 det this,hypothesis
R3661 T4723 T4721 dobj hypothesis,test
R3662 T4724 T4723 punct ",",hypothesis
R3663 T4725 T4728 nmod RUNX1,expression
R3664 T4726 T4725 cc and,RUNX1
R3665 T4727 T4728 compound RUNX3,expression
R3667 T4728 T4730 nsubjpass expression,knocked
R3873 T4720 T4721 aux To,test
R3877 T4721 T4730 advcl test,knocked

sentences

Id Subject Object Predicate Lexical cue
T3608 0-158 Sentence denotes To test this hypothesis, RUNX1 and RUNX3 expression was knocked down in human naive CD4+ T cells by transfection of small interfering RNAs (siRNAs; Fig. 1 B).
T54 0-158 Sentence denotes To test this hypothesis, RUNX1 and RUNX3 expression was knocked down in human naive CD4+ T cells by transfection of small interfering RNAs (siRNAs; Fig. 1 B).

events-check-again

Id Subject Object Predicate Lexical cue
T5514 25-30 Protein denotes RUNX1
T5515 35-40 Protein denotes RUNX3
T5516 41-51 Gene_expression denotes expression
T5517 41-51 Gene_expression denotes expression
T5518 56-68 Negative_regulation denotes knocked down
T5519 56-68 Negative_regulation denotes knocked down
T5520 84-87 Protein denotes CD4
R4408 T5514 T5516 themeOf RUNX1,expression
R4409 T5515 T5517 themeOf RUNX3,expression
R4410 T5516 T5518 themeOf expression,knocked down
R4411 T5517 T5519 themeOf expression,knocked down

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3632 41-51 Gene_expression denotes expression
T3633 41-51 Gene_expression denotes expression
T3634 56-68 Negative_regulation denotes knocked down
T3635 56-68 Negative_regulation denotes knocked down
T3735 25-30 Protein denotes RUNX1
T3736 35-40 Protein denotes RUNX3
T3737 84-87 Protein denotes CD4
R2855 T3735 T3632 themeOf RUNX1,expression
R2856 T3736 T3633 themeOf RUNX3,expression
R2779 T3632 T3634 themeOf expression,knocked down
R2780 T3633 T3635 themeOf expression,knocked down

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4479 25-30 Q01196 denotes RUNX1
T4480 35-40 Q13761 denotes RUNX3
T4481 84-87 P01730 denotes CD4

test2

Id Subject Object Predicate Lexical cue Negation
T3497 25-30 Protein denotes RUNX1 true
T3498 35-40 Protein denotes RUNX3
T3499 41-51 Gene_expression denotes expression
T3500 56-68 Negative_regulation denotes knocked down true
T3501 84-87 Protein denotes CD4
R2728 T3497 T3499 themeOf RUNX1,expression
R2729 T3498 T3499 themeOf RUNX3,expression
R2730 T3499 T3500 themeOf expression,knocked down