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PMC:2806624 / 52589-52865 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25493 0-9 JJ denotes DNA-bound
T25494 10-18 NN denotes proteins
T25495 19-23 VB denotes were
T25496 24-33 VB denotes collected
T25497 34-38 IN denotes with
T25498 39-59 JJ denotes streptavidin-agarose
T25499 60-65 NN denotes beads
T25500 65-66 -COMMA- denotes ,
T25501 67-73 VB denotes washed
T25502 74-78 IN denotes with
T25503 79-83 NN denotes HKMG
T25504 84-90 NN denotes buffer
T25505 90-91 -COMMA- denotes ,
T25506 92-95 CC denotes and
T25507 96-103 RB denotes finally
T25508 104-115 VB denotes resuspended
T25509 116-118 IN denotes in
T25510 119-125 NN denotes NuPAGE
T25511 126-133 NN denotes loading
T25512 134-140 NN denotes buffer
T25513 141-142 -LRB- denotes (
T25514 142-152 NNP denotes Invitrogen
T25515 153-157 NNP denotes Life
T25516 158-170 NNP denotes Technologies
T25517 170-171 -RRB- denotes )
T25518 171-172 -COMMA- denotes ,
T25519 173-179 VB denotes heated
T25520 180-182 TO denotes to
T25521 183-187 NN denotes 70°C
T25522 188-191 IN denotes for
T25523 192-194 CD denotes 10
T25524 195-198 NN denotes min
T25525 198-199 -COMMA- denotes ,
T25526 200-203 CC denotes and
T25527 204-213 VB denotes separated
T25528 214-216 IN denotes on
T25529 217-218 DT denotes a
T25530 219-225 NN denotes NuPAGE
T25531 226-230 CD denotes 4–12
T25532 230-231 NN denotes %
T25533 232-240 NN denotes Bis-Tris
T25534 241-244 NN denotes gel
T25535 245-246 -LRB- denotes (
T25536 246-256 NNP denotes Invitrogen
T25537 257-261 NNP denotes Life
T25538 262-274 NNP denotes Technologies
T25539 274-275 -RRB- denotes )
R19839 T25494 T25493 arg1Of proteins,DNA-bound
R19840 T25494 T25495 arg1Of proteins,were
R19841 T25494 T25496 arg2Of proteins,collected
R19842 T25494 T25508 arg2Of proteins,resuspended
R19843 T25494 T25527 arg2Of proteins,separated
R19844 T25496 T25497 arg1Of collected,with
R19845 T25496 T25506 arg1Of collected,and
R19846 T25499 T25497 arg2Of beads,with
R19847 T25499 T25498 arg1Of beads,streptavidin-agarose
R19848 T25499 T25500 arg1Of beads,","
R19849 T25499 T25501 arg2Of beads,washed
R19850 T25501 T25502 arg1Of washed,with
R19851 T25504 T25502 arg2Of buffer,with
R19852 T25504 T25503 arg1Of buffer,HKMG
R19853 T25506 T25495 arg2Of and,were
R19854 T25506 T25505 arg1Of and,","
R19855 T25508 T25507 arg1Of resuspended,finally
R19856 T25508 T25509 arg1Of resuspended,in
R19857 T25508 T25526 arg1Of resuspended,and
R19858 T25512 T25509 arg2Of buffer,in
R19859 T25512 T25510 arg1Of buffer,NuPAGE
R19860 T25512 T25511 arg1Of buffer,loading
R19861 T25512 T25513 arg1Of buffer,(
R19862 T25512 T25518 arg1Of buffer,","
R19863 T25512 T25519 arg2Of buffer,heated
R19864 T25516 T25513 arg2Of Technologies,(
R19865 T25516 T25514 arg1Of Technologies,Invitrogen
R19866 T25516 T25515 arg1Of Technologies,Life
R19867 T25517 T25513 arg3Of ),(
R19868 T25519 T25520 arg1Of heated,to
R19869 T25519 T25522 arg1Of heated,for
R19870 T25521 T25520 arg2Of 70°C,to
R19871 T25524 T25522 arg2Of min,for
R19872 T25524 T25523 arg1Of min,10
R19873 T25526 T25506 arg2Of and,and
R19874 T25526 T25525 arg1Of and,","
R19875 T25527 T25526 arg2Of separated,and
R19876 T25527 T25528 arg1Of separated,on
R19877 T25531 T25532 arg1Of 4–12,%
R19878 T25534 T25528 arg2Of gel,on
R19879 T25534 T25529 arg1Of gel,a
R19880 T25534 T25530 arg1Of gel,NuPAGE
R19881 T25534 T25531 arg1Of gel,4–12
R19882 T25534 T25533 arg1Of gel,Bis-Tris
R19883 T25534 T25535 arg1Of gel,(
R19884 T25538 T25535 arg2Of Technologies,(
R19885 T25538 T25536 arg1Of Technologies,Invitrogen
R19886 T25538 T25537 arg1Of Technologies,Life
R19887 T25539 T25535 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T25706 0-9 JJ denotes DNA-bound
T25707 10-18 NNS denotes proteins
T25708 19-23 VBD denotes were
T25709 24-33 VBN denotes collected
T25710 34-38 IN denotes with
T25711 39-59 JJ denotes streptavidin-agarose
T25712 60-65 NNS denotes beads
T25713 65-66 , denotes ,
T25714 67-73 VBN denotes washed
T25715 74-78 IN denotes with
T25716 79-83 NNP denotes HKMG
T25717 84-90 NN denotes buffer
T25718 90-91 , denotes ,
T25719 92-95 CC denotes and
T25720 96-103 RB denotes finally
T25721 104-115 VBD denotes resuspended
T25722 116-118 IN denotes in
T25723 119-125 NNP denotes NuPAGE
T25724 126-133 VBG denotes loading
T25725 134-140 NN denotes buffer
T25726 141-142 -LRB- denotes (
T25727 142-152 NNP denotes Invitrogen
T25728 153-157 NNP denotes Life
T25729 158-170 NNPS denotes Technologies
T25730 170-171 -RRB- denotes )
T25731 171-172 , denotes ,
T25732 173-179 VBN denotes heated
T25733 180-182 TO denotes to
T25734 183-185 CD denotes 70
T25735 185-186 CD denotes °
T25736 186-187 NNP denotes C
T25737 188-191 IN denotes for
T25738 192-194 CD denotes 10
T25739 195-198 NN denotes min
T25740 198-199 , denotes ,
T25741 200-203 CC denotes and
T25742 204-213 VBD denotes separated
T25743 214-216 IN denotes on
T25744 217-218 DT denotes a
T25745 219-225 NNP denotes NuPAGE
T25746 226-227 CD denotes 4
T25747 228-230 CD denotes 12
T25748 230-231 NN denotes %
T25749 232-240 NNP denotes Bis-Tris
T25750 241-244 NN denotes gel
T25751 245-246 -LRB- denotes (
T25752 246-256 NNP denotes Invitrogen
T25753 257-261 NNP denotes Life
T25754 262-274 NNPS denotes Technologies
T25755 274-275 -RRB- denotes )
T25756 275-276 . denotes .
R20041 T25706 T25707 amod DNA-bound,proteins
R20042 T25707 T25709 nsubjpass proteins,collected
R20043 T25708 T25709 auxpass were,collected
R20044 T25709 T25709 ROOT collected,collected
R20045 T25710 T25709 prep with,collected
R20046 T25711 T25712 amod streptavidin-agarose,beads
R20047 T25712 T25710 pobj beads,with
R20048 T25713 T25712 punct ",",beads
R20049 T25714 T25712 acl washed,beads
R20050 T25715 T25714 prep with,washed
R20051 T25716 T25717 compound HKMG,buffer
R20052 T25717 T25715 pobj buffer,with
R20053 T25718 T25709 punct ",",collected
R20054 T25719 T25709 cc and,collected
R20055 T25720 T25721 advmod finally,resuspended
R20056 T25721 T25709 conj resuspended,collected
R20057 T25722 T25721 prep in,resuspended
R20058 T25723 T25725 nmod NuPAGE,buffer
R20059 T25724 T25725 compound loading,buffer
R20060 T25725 T25722 pobj buffer,in
R20061 T25726 T25729 punct (,Technologies
R20062 T25727 T25729 compound Invitrogen,Technologies
R20063 T25728 T25729 compound Life,Technologies
R20064 T25729 T25725 appos Technologies,buffer
R20065 T25730 T25725 punct ),buffer
R20066 T25731 T25721 punct ",",resuspended
R20067 T25732 T25709 conj heated,collected
R20068 T25733 T25732 prep to,heated
R20069 T25734 T25735 compound 70,°
R20070 T25735 T25736 compound °,C
R20071 T25736 T25733 pobj C,to
R20072 T25737 T25732 prep for,heated
R20073 T25738 T25739 nummod 10,min
R20074 T25739 T25737 pobj min,for
R20075 T25740 T25732 punct ",",heated
R20076 T25741 T25732 cc and,heated
R20077 T25742 T25732 conj separated,heated
R20078 T25743 T25742 prep on,separated
R20079 T25744 T25750 det a,gel
R20080 T25745 T25750 nmod NuPAGE,gel
R20081 T25746 T25745 nummod 4,NuPAGE
R20082 T25747 T25748 nummod 12,%
R20083 T25748 T25750 compound %,gel
R20084 T25749 T25750 compound Bis-Tris,gel
R20085 T25750 T25743 pobj gel,on
R20086 T25751 T25754 punct (,Technologies
R20087 T25752 T25754 compound Invitrogen,Technologies
R20088 T25753 T25754 compound Life,Technologies
R20089 T25754 T25750 appos Technologies,gel
R20090 T25755 T25754 punct ),Technologies
R20091 T25756 T25709 punct .,collected

sentences

Id Subject Object Predicate Lexical cue
T25369 0-276 Sentence denotes DNA-bound proteins were collected with streptavidin-agarose beads, washed with HKMG buffer, and finally resuspended in NuPAGE loading buffer (Invitrogen Life Technologies), heated to 70°C for 10 min, and separated on a NuPAGE 4–12% Bis-Tris gel (Invitrogen Life Technologies).
T360 0-276 Sentence denotes DNA-bound proteins were collected with streptavidin-agarose beads, washed with HKMG buffer, and finally resuspended in NuPAGE loading buffer (Invitrogen Life Technologies), heated to 70°C for 10 min, and separated on a NuPAGE 4–12% Bis-Tris gel (Invitrogen Life Technologies).