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PMC:2806624 / 43730-43903 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T21400 0-5 JJ denotes Human
T21401 6-11 JJ denotes naive
T21402 12-16 JJ denotes CD4+
T21403 17-18 NN denotes T
T21404 19-24 NN denotes cells
T21405 25-29 VB denotes were
T21406 30-38 VB denotes isolated
T21407 39-41 IN denotes by
T21408 42-50 JJ denotes negative
T21409 51-60 NN denotes selection
T21410 61-63 IN denotes by
T21411 64-68 NN denotes MACS
T21412 69-73 IN denotes from
T21413 74-79 NN denotes PBMCs
T21414 80-83 CC denotes and
T21415 84-90 CC denotes either
T21416 91-102 VB denotes transfected
T21417 103-107 IN denotes with
T21418 108-109 DT denotes a
T21419 110-119 VB denotes scrambled
T21420 120-125 NN denotes siRNA
T21421 126-128 CC denotes or
T21422 129-133 IN denotes with
T21423 134-135 DT denotes a
T21424 136-147 NN denotes combination
T21425 148-150 IN denotes of
T21426 151-156 NN denotes RUNX1
T21427 157-160 CC denotes and
T21428 161-166 NN denotes RUNX3
T21429 167-172 NN denotes siRNA
R16579 T21404 T21400 arg1Of cells,Human
R16580 T21404 T21401 arg1Of cells,naive
R16581 T21404 T21402 arg1Of cells,CD4+
R16582 T21404 T21403 arg1Of cells,T
R16583 T21404 T21405 arg1Of cells,were
R16584 T21404 T21406 arg2Of cells,isolated
R16585 T21404 T21416 arg1Of cells,transfected
R16586 T21406 T21405 arg2Of isolated,were
R16587 T21406 T21407 arg1Of isolated,by
R16588 T21406 T21414 arg1Of isolated,and
R16589 T21409 T21407 arg2Of selection,by
R16590 T21409 T21408 arg1Of selection,negative
R16591 T21411 T21406 arg1Of MACS,isolated
R16592 T21411 T21410 arg2Of MACS,by
R16593 T21411 T21412 arg1Of MACS,from
R16594 T21413 T21412 arg2Of PBMCs,from
R16595 T21416 T21414 arg2Of transfected,and
R16596 T21416 T21415 arg1Of transfected,either
R16597 T21416 T21417 arg1Of transfected,with
R16598 T21416 T21422 arg1Of transfected,with
R16599 T21417 T21421 arg1Of with,or
R16600 T21420 T21417 arg2Of siRNA,with
R16601 T21420 T21418 arg1Of siRNA,a
R16602 T21420 T21419 arg2Of siRNA,scrambled
R16603 T21422 T21421 arg2Of with,or
R16604 T21424 T21422 arg2Of combination,with
R16605 T21424 T21423 arg1Of combination,a
R16606 T21424 T21425 arg1Of combination,of
R16607 T21426 T21427 arg1Of RUNX1,and
R16608 T21428 T21427 arg2Of RUNX3,and
R16609 T21429 T21425 arg2Of siRNA,of
R16610 T21429 T21426 arg1Of siRNA,RUNX1
R16611 T21429 T21428 arg1Of siRNA,RUNX3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T21771 0-5 JJ denotes Human
T21772 6-11 JJ denotes naive
T21773 12-15 NNP denotes CD4
T21774 15-16 CD denotes +
T21775 17-18 NNP denotes T
T21776 19-24 NNS denotes cells
T21777 25-29 VBD denotes were
T21778 30-38 VBN denotes isolated
T21779 39-41 IN denotes by
T21780 42-50 JJ denotes negative
T21781 51-60 NN denotes selection
T21782 61-63 IN denotes by
T21783 64-68 NNP denotes MACS
T21784 69-73 IN denotes from
T21785 74-79 NNPS denotes PBMCs
T21786 80-83 CC denotes and
T21787 84-90 DT denotes either
T21788 91-102 VBN denotes transfected
T21789 103-107 IN denotes with
T21790 108-109 DT denotes a
T21791 110-119 VBN denotes scrambled
T21792 120-125 NNP denotes siRNA
T21793 126-128 CC denotes or
T21794 129-133 IN denotes with
T21795 134-135 DT denotes a
T21796 136-147 NN denotes combination
T21797 148-150 IN denotes of
T21798 151-156 NNP denotes RUNX1
T21799 157-160 CC denotes and
T21800 161-166 NNP denotes RUNX3
T21801 167-172 NNP denotes siRNA
T21802 172-173 . denotes .
R16913 T21776 T21778 nsubjpass cells,isolated
R16914 T21777 T21778 auxpass were,isolated
R16915 T21778 T21778 ROOT isolated,isolated
R16916 T21779 T21778 agent by,isolated
R16917 T21780 T21781 amod negative,selection
R16918 T21781 T21779 pobj selection,by
R16919 T21782 T21781 prep by,selection
R16920 T21783 T21782 pobj MACS,by
R16921 T21784 T21783 prep from,MACS
R16922 T21785 T21784 pobj PBMCs,from
R16923 T21786 T21781 cc and,selection
R16924 T21787 T21788 det either,transfected
R16925 T21788 T21778 conj transfected,isolated
R16926 T21789 T21788 prep with,transfected
R16927 T21790 T21792 det a,siRNA
R16928 T21791 T21792 amod scrambled,siRNA
R16929 T21792 T21789 pobj siRNA,with
R16930 T21793 T21789 cc or,with
R16931 T21794 T21789 conj with,with
R16932 T21795 T21796 det a,combination
R16933 T21796 T21794 pobj combination,with
R16934 T21797 T21796 prep of,combination
R16935 T21798 T21797 pobj RUNX1,of
R16936 T21799 T21798 cc and,RUNX1
R16937 T21800 T21801 compound RUNX3,siRNA
R16938 T21801 T21798 conj siRNA,RUNX1
R16939 T21802 T21778 punct .,isolated
R16908 T21771 T21776 amod Human,cells
R16909 T21772 T21776 amod naive,cells
R16910 T21773 T21776 compound CD4,cells
R16911 T21774 T21776 nummod +,cells
R16912 T21775 T21776 compound T,cells

GO-CC

Id Subject Object Predicate Lexical cue
T21973 19-24 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T21246 0-173 Sentence denotes Human naive CD4+ T cells were isolated by negative selection by MACS from PBMCs and either transfected with a scrambled siRNA or with a combination of RUNX1 and RUNX3 siRNA.
T302 0-173 Sentence denotes Human naive CD4+ T cells were isolated by negative selection by MACS from PBMCs and either transfected with a scrambled siRNA or with a combination of RUNX1 and RUNX3 siRNA.

events-check-again

Id Subject Object Predicate Lexical cue
T22002 12-15 Protein denotes CD4
T22003 151-156 Protein denotes RUNX1
T22004 161-166 Protein denotes RUNX3
T22005 167-172 Negative_regulation denotes siRNA
T22006 167-172 Negative_regulation denotes siRNA
R17073 T22003 T22005 themeOf RUNX1,siRNA
R17074 T22004 T22006 themeOf RUNX3,siRNA

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T22056 12-16 Protein denotes CD4+
T22057 151-156 Protein denotes RUNX1
T22058 161-172 Protein denotes RUNX3 siRNA

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T21229 12-15 Protein denotes CD4
T21230 151-156 Protein denotes RUNX1
T21231 161-166 Protein denotes RUNX3
T21232 167-172 Negative_regulation denotes siRNA
T21233 167-172 Negative_regulation denotes siRNA
R16430 T21231 T21233 themeOf RUNX3,siRNA
R16429 T21230 T21232 themeOf RUNX1,siRNA

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T21576 12-15 P01730 denotes CD4
T21577 151-156 Q01196 denotes RUNX1
T21578 161-166 Q13761 denotes RUNX3

test2

Id Subject Object Predicate Lexical cue
T21199 12-15 Protein denotes CD4
T21200 151-156 Protein denotes RUNX1
T21201 161-166 Protein denotes RUNX3
T21202 167-172 Negative_regulation denotes siRNA
R16426 T21200 T21202 themeOf RUNX1,siRNA
R16427 T21201 T21202 themeOf RUNX3,siRNA