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PMC:2806624 / 4341-4780 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1787 0-5 NN denotes RUNX1
T1788 6-9 CC denotes and
T1789 10-15 NN denotes RUNX3
T1790 16-20 RB denotes also
T1791 21-25 VB denotes work
T1792 26-34 RB denotes together
T1793 35-37 IN denotes in
T1794 38-41 DT denotes the
T1795 42-55 NN denotes establishment
T1796 56-58 IN denotes of
T1797 59-66 NN denotes lineage
T1798 67-80 NN denotes specification
T1799 81-83 IN denotes of
T1800 84-85 NN denotes T
T1801 86-97 NN denotes lymphocytes
T1802 98-99 -LRB- denotes (
T1803 99-107 NNP denotes Taniuchi
T1804 108-110 FW denotes et
T1805 111-114 FW denotes al.
T1806 114-115 -COMMA- denotes ,
T1807 116-120 CD denotes 2002
T1808 120-121 -COLON- denotes ;
T1809 122-127 NNP denotes Egawa
T1810 128-130 FW denotes et
T1811 131-134 FW denotes al.
T1812 134-135 -COMMA- denotes ,
T1813 136-140 CD denotes 2007
T1814 140-141 -RRB- denotes )
T1815 141-151 NN denotes . RUNX1 is
T1816 152-153 DT denotes a
T1817 154-162 JJ denotes frequent
T1818 163-169 NN denotes target
T1819 170-173 IN denotes for
T1820 174-185 JJ denotes chromosomal
T1821 186-200 NN denotes translocations
T1822 201-211 VB denotes associated
T1823 212-216 IN denotes with
T1824 217-226 NN denotes leukemias
T1825 227-228 -LRB- denotes (
T1826 228-232 NNP denotes Look
T1827 232-233 -COMMA- denotes ,
T1828 234-238 CD denotes 1997
T1829 238-239 -RRB- denotes )
T1830 239-240 -COMMA- denotes ,
T1831 241-262 NN denotes and RUNX3 methylation
T1832 263-266 CC denotes and
T1833 267-276 NN denotes silencing
T1834 277-279 VB denotes is
T1835 280-288 VB denotes observed
T1836 289-291 IN denotes in
T1837 292-299 JJ denotes various
T1838 300-305 JJ denotes human
T1839 306-316 JJ denotes epithelial
T1840 317-324 NN denotes cancers
T1841 325-326 -LRB- denotes (
T1842 326-331 NNP denotes Blyth
T1843 332-334 FW denotes et
T1844 335-338 FW denotes al.
T1845 338-339 -COMMA- denotes ,
T1846 340-344 CD denotes 2005
T1847 344-345 -RRB- denotes )
T1848 345-351 NN denotes . RUNX
T1849 352-358 NN denotes family
T1850 359-366 NN denotes members
T1851 367-372 VB denotes share
T1852 373-376 DT denotes the
T1853 377-381 NN denotes Runt
T1854 382-388 NN denotes domain
T1855 388-389 -COMMA- denotes ,
T1856 390-395 WDT denotes which
T1857 396-398 VB denotes is
T1858 399-410 JJ denotes responsible
T1859 411-414 IN denotes for
T1860 415-418 NN denotes DNA
T1861 419-426 NN denotes binding
T1862 427-428 -LRB- denotes (
T1863 428-431 NN denotes Ito
T1864 431-432 -COMMA- denotes ,
T1865 433-437 CD denotes 1999
T1866 437-438 -RRB- denotes )
R1368 T1787 T1788 arg1Of RUNX1,and
R1369 T1788 T1791 arg1Of and,work
R1370 T1789 T1788 arg2Of RUNX3,and
R1371 T1791 T1790 arg1Of work,also
R1372 T1791 T1792 arg1Of work,together
R1373 T1791 T1793 arg1Of work,in
R1374 T1791 T1832 arg1Of work,and
R1375 T1795 T1793 arg2Of establishment,in
R1376 T1795 T1794 arg1Of establishment,the
R1377 T1795 T1796 arg1Of establishment,of
R1378 T1795 T1802 arg1Of establishment,(
R1379 T1795 T1815 arg1Of establishment,. RUNX1 is
R1380 T1798 T1796 arg2Of specification,of
R1381 T1798 T1797 arg1Of specification,lineage
R1382 T1798 T1799 arg1Of specification,of
R1383 T1801 T1799 arg2Of lymphocytes,of
R1384 T1801 T1800 arg1Of lymphocytes,T
R1385 T1803 T1802 arg2Of Taniuchi,(
R1386 T1803 T1804 arg1Of Taniuchi,et
R1387 T1803 T1805 arg1Of Taniuchi,al.
R1388 T1803 T1806 arg1Of Taniuchi,","
R1389 T1803 T1808 arg1Of Taniuchi,;
R1390 T1807 T1806 arg2Of 2002,","
R1391 T1809 T1808 arg2Of Egawa,;
R1392 T1809 T1810 arg1Of Egawa,et
R1393 T1809 T1811 arg1Of Egawa,al.
R1394 T1809 T1812 arg1Of Egawa,","
R1395 T1813 T1812 arg2Of 2007,","
R1396 T1814 T1802 arg3Of ),(
R1397 T1818 T1817 arg1Of target,frequent
R1398 T1818 T1819 arg1Of target,for
R1399 T1818 T1830 arg1Of target,","
R1400 T1821 T1819 arg2Of translocations,for
R1401 T1821 T1820 arg1Of translocations,chromosomal
R1402 T1821 T1822 arg2Of translocations,associated
R1403 T1822 T1823 arg1Of associated,with
R1404 T1822 T1825 arg1Of associated,(
R1405 T1824 T1823 arg2Of leukemias,with
R1406 T1826 T1825 arg2Of Look,(
R1407 T1826 T1827 arg1Of Look,","
R1408 T1826 T1828 arg1Of Look,1997
R1409 T1829 T1825 arg3Of ),(
R1410 T1830 T1815 arg2Of ",",. RUNX1 is
R1411 T1830 T1816 arg1Of ",",a
R1412 T1831 T1830 arg2Of and RUNX3 methylation,","
R1413 T1833 T1834 arg1Of silencing,is
R1414 T1833 T1835 arg2Of silencing,observed
R1415 T1835 T1834 arg2Of observed,is
R1416 T1835 T1836 arg1Of observed,in
R1417 T1835 T1841 arg1Of observed,(
R1418 T1840 T1836 arg2Of cancers,in
R1419 T1840 T1837 arg1Of cancers,various
R1420 T1840 T1838 arg1Of cancers,human
R1421 T1840 T1839 arg1Of cancers,epithelial
R1422 T1842 T1841 arg2Of Blyth,(
R1423 T1842 T1843 arg1Of Blyth,et
R1424 T1842 T1844 arg1Of Blyth,al.
R1425 T1842 T1845 arg1Of Blyth,","
R1426 T1846 T1845 arg2Of 2005,","
R1427 T1847 T1841 arg3Of ),(
R1428 T1850 T1848 arg1Of members,". RUNX"
R1429 T1850 T1849 arg1Of members,family
R1430 T1850 T1851 arg1Of members,share
R1431 T1851 T1832 arg2Of share,and
R1432 T1851 T1834 modOf share,is
R1433 T1854 T1851 arg2Of domain,share
R1434 T1854 T1852 arg1Of domain,the
R1435 T1854 T1853 arg1Of domain,Runt
R1436 T1854 T1855 arg1Of domain,","
R1437 T1854 T1856 arg1Of domain,which
R1438 T1854 T1857 arg1Of domain,is
R1439 T1854 T1858 arg1Of domain,responsible
R1440 T1858 T1857 arg2Of responsible,is
R1441 T1858 T1859 arg1Of responsible,for
R1442 T1861 T1859 arg2Of binding,for
R1443 T1861 T1860 arg1Of binding,DNA
R1444 T1861 T1862 arg1Of binding,(
R1445 T1863 T1862 arg2Of Ito,(
R1446 T1863 T1864 arg1Of Ito,","
R1447 T1865 T1864 arg2Of 1999,","
R1448 T1866 T1862 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2628 0-5 CD denotes RUNX1
T2629 6-9 CC denotes and
T2630 10-15 NNP denotes RUNX3
T2631 16-20 RB denotes also
T2632 21-25 VBP denotes work
T2633 26-34 RB denotes together
T2634 35-37 IN denotes in
T2635 38-41 DT denotes the
T2636 42-55 NN denotes establishment
T2637 56-58 IN denotes of
T2638 59-66 NN denotes lineage
T2639 67-80 NN denotes specification
T2640 81-83 IN denotes of
T2641 84-85 NNP denotes T
T2642 86-97 NNS denotes lymphocytes
T2643 98-99 -LRB- denotes (
T2644 99-107 NNP denotes Taniuchi
T2645 108-110 FW denotes et
T2646 111-114 FW denotes al.
T2647 114-115 , denotes ,
T2648 116-120 CD denotes 2002
T2649 120-121 : denotes ;
T2650 122-127 NNP denotes Egawa
T2651 128-130 FW denotes et
T2652 131-134 FW denotes al.
T2653 134-135 , denotes ,
T2654 136-140 CD denotes 2007
T2655 140-141 -RRB- denotes )
T2656 141-142 . denotes .
T2657 143-151 NNS denotes RUNX1 is
T2658 152-153 DT denotes a
T2659 154-162 JJ denotes frequent
T2660 163-169 NN denotes target
T2661 170-173 IN denotes for
T2662 174-185 JJ denotes chromosomal
T2663 186-200 NNS denotes translocations
T2664 201-211 VBN denotes associated
T2665 212-216 IN denotes with
T2666 217-226 NNS denotes leukemias
T2667 227-228 -LRB- denotes (
T2668 228-232 VB denotes Look
T2669 232-233 , denotes ,
T2670 234-238 CD denotes 1997
T2671 238-239 -RRB- denotes )
T2672 239-240 , denotes ,
T2673 241-262 NN denotes and RUNX3 methylation
T2674 263-266 CC denotes and
T2675 267-276 NN denotes silencing
T2676 277-279 VBZ denotes is
T2677 280-288 VBN denotes observed
T2678 289-291 IN denotes in
T2679 292-299 JJ denotes various
T2680 300-305 JJ denotes human
T2681 306-316 JJ denotes epithelial
T2682 317-324 NNS denotes cancers
T2683 325-326 -LRB- denotes (
T2684 326-331 NNP denotes Blyth
T2685 332-334 FW denotes et
T2686 335-338 FW denotes al.
T2687 338-339 , denotes ,
T2688 340-344 CD denotes 2005
T2689 344-345 -RRB- denotes )
T2690 345-346 . denotes .
T2691 347-351 NNP denotes RUNX
T2692 352-358 NN denotes family
T2693 359-366 NNS denotes members
T2694 367-372 VBP denotes share
T2695 373-376 DT denotes the
T2696 377-381 NNP denotes Runt
T2697 382-388 NN denotes domain
T2698 388-389 , denotes ,
T2699 390-395 WDT denotes which
T2700 396-398 VBZ denotes is
T2701 399-410 JJ denotes responsible
T2702 411-414 IN denotes for
T2703 415-418 NNP denotes DNA
T2704 419-426 JJ denotes binding
T2705 427-428 -LRB- denotes (
T2706 428-431 NNP denotes Ito
T2707 431-432 , denotes ,
T2708 433-437 CD denotes 1999
T2709 437-438 -RRB- denotes )
T2710 438-439 . denotes .
R2061 T2649 T2646 punct ;,al.
R2062 T2650 T2652 compound Egawa,al.
R2064 T2651 T2652 nmod et,al.
R2065 T2652 T2632 npadvmod al.,work
R2066 T2653 T2652 punct ",",al.
R2067 T2654 T2652 npadvmod 2007,al.
R2069 T2655 T2652 punct ),al.
R2070 T2656 T2632 punct .,work
R2072 T2657 T2677 nsubjpass RUNX1 is,observed
R2073 T2658 T2660 det a,target
R2074 T2659 T2660 amod frequent,target
R2076 T2660 T2657 appos target,RUNX1 is
R2077 T2661 T2660 prep for,target
R2078 T2662 T2663 amod chromosomal,translocations
R2080 T2663 T2661 pobj translocations,for
R2081 T2664 T2663 acl associated,translocations
R2083 T2665 T2664 prep with,associated
R2084 T2666 T2665 pobj leukemias,with
R2085 T2667 T2666 punct (,leukemias
R2087 T2668 T2668 ROOT Look,Look
R2088 T2669 T2668 punct ",",Look
R2089 T2670 T2668 npadvmod 1997,Look
R2091 T2671 T2668 punct ),Look
R2092 T2672 T2668 punct ",",Look
R2094 T2673 T2677 nsubjpass and RUNX3 methylation,observed
R2095 T2674 T2673 cc and,and RUNX3 methylation
R2097 T2675 T2673 conj silencing,and RUNX3 methylation
R2098 T2676 T2677 auxpass is,observed
R2099 T2677 T2677 ROOT observed,observed
R2101 T2678 T2677 prep in,observed
R2102 T2679 T2682 amod various,cancers
R2103 T2680 T2682 amod human,cancers
R2105 T2681 T2682 amod epithelial,cancers
R2106 T2682 T2678 pobj cancers,in
R2107 T2683 T2686 punct (,al.
R2108 T2684 T2686 compound Blyth,al.
R2109 T2685 T2686 nmod et,al.
R2110 T2686 T2677 dep al.,observed
R2112 T2687 T2686 punct ",",al.
R2113 T2688 T2686 npadvmod 2005,al.
R2114 T2689 T2686 punct ),al.
R2116 T2690 T2677 punct .,observed
R2117 T2691 T2693 compound RUNX,members
R2118 T2692 T2693 compound family,members
R2120 T2693 T2694 nsubj members,share
R2121 T2694 T2694 ROOT share,share
R2122 T2695 T2697 det the,domain
R2124 T2696 T2697 compound Runt,domain
R2125 T2697 T2694 dobj domain,share
R2126 T2698 T2697 punct ",",domain
R2128 T2699 T2700 nsubj which,is
R2129 T2700 T2697 relcl is,domain
R2130 T2701 T2700 acomp responsible,is
R2131 T2702 T2701 prep for,responsible
R2133 T2703 T2702 pobj DNA,for
R2134 T2704 T2706 amod binding,Ito
R2136 T2705 T2706 punct (,Ito
R2142 T2708 T2706 npadvmod 1999,Ito
R2143 T2709 T2706 punct ),Ito
R2144 T2710 T2694 punct .,share
R2275 T2628 T2632 nsubj RUNX1,work
R2277 T2629 T2628 cc and,RUNX1
R2278 T2630 T2632 nsubj RUNX3,work
R2280 T2631 T2632 advmod also,work
R2284 T2632 T2632 ROOT work,work
R2288 T2633 T2632 advmod together,work
R2291 T2634 T2632 prep in,work
R2293 T2635 T2636 det the,establishment
R2295 T2636 T2634 pobj establishment,in
R2299 T2637 T2636 prep of,establishment
R2302 T2638 T2639 compound lineage,specification
R2305 T2639 T2637 pobj specification,of
R2308 T2640 T2639 prep of,specification
R2315 T2641 T2642 compound T,lymphocytes
R2319 T2642 T2640 pobj lymphocytes,of
R2323 T2643 T2646 punct (,al.
R2055 T2644 T2646 nmod Taniuchi,al.
R2056 T2645 T2646 nmod et,al.
R2058 T2646 T2632 npadvmod al.,work
R2059 T2647 T2646 punct ",",al.
R2060 T2648 T2646 npadvmod 2002,al.
R2139 T2706 T2700 dobj Ito,is
R2140 T2707 T2706 punct ",",Ito

GO-MF

Id Subject Object Predicate Lexical cue
T2998 419-426 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T3004 415-426 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding

GO-CC

Id Subject Object Predicate Lexical cue
T3018 174-185 http://purl.obolibrary.org/obo/GO_0005694 denotes chromosomal

sentences

Id Subject Object Predicate Lexical cue
T1289 0-439 Sentence denotes RUNX1 and RUNX3 also work together in the establishment of lineage specification of T lymphocytes (Taniuchi et al., 2002; Egawa et al., 2007). RUNX1 is a frequent target for chromosomal translocations associated with leukemias (Look, 1997), and RUNX3 methylation and silencing is observed in various human epithelial cancers (Blyth et al., 2005). RUNX family members share the Runt domain, which is responsible for DNA binding (Ito, 1999).
T26 0-142 Sentence denotes RUNX1 and RUNX3 also work together in the establishment of lineage specification of T lymphocytes (Taniuchi et al., 2002; Egawa et al., 2007).
T27 143-346 Sentence denotes RUNX1 is a frequent target for chromosomal translocations associated with leukemias (Look, 1997), and RUNX3 methylation and silencing is observed in various human epithelial cancers (Blyth et al., 2005).
T28 347-439 Sentence denotes RUNX family members share the Runt domain, which is responsible for DNA binding (Ito, 1999).

events-check-again

Id Subject Object Predicate Lexical cue
T3259 0-5 Protein denotes RUNX1
T3260 10-15 Protein denotes RUNX3
T3261 143-148 Protein denotes RUNX1
T3262 245-250 Protein denotes RUNX3
T3263 347-351 Protein denotes RUNX

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3093 0-5 Protein denotes RUNX1
T3094 10-15 Protein denotes RUNX3
T3095 347-366 Protein denotes RUNX family members
T3096 377-388 Protein denotes Runt domain
T3097 367-372 Negative_regulation denotes share
R2458 T3095 T3097 causeOf RUNX family members,share
R2459 T3096 T3097 themeOf Runt domain,share

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1249 0-5 Protein denotes RUNX1
T1250 10-15 Protein denotes RUNX3
T1251 143-148 Protein denotes RUNX1
T1252 245-250 Protein denotes RUNX3
T1253 347-351 Protein denotes RUNX

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2072 0-5 Q01196 denotes RUNX1
T2073 10-15 Q13761 denotes RUNX3
T2074 347-351 Q13950 denotes RUNX
T2075 347-351 Q13761 denotes RUNX
T2076 347-351 Q01196 denotes RUNX

test2

Id Subject Object Predicate Lexical cue
T1158 0-5 Protein denotes RUNX1
T1159 10-15 Protein denotes RUNX3
T1160 143-151 Protein denotes RUNX1 is
T1161 241-262 Protein denotes and RUNX3 methylation
T1162 267-276 Negative_regulation denotes silencing
T1163 347-351 Protein denotes RUNX
T1164 419-426 Binding denotes binding
R811 T1161 T1162 themeOf and RUNX3 methylation,silencing
R812 T1163 T1162 themeOf RUNX,silencing