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6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

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6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T32885","span":{"begin":757,"end":772},"obj":"http://purl.obolibrary.org/obo/GO_0001775"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T32886","span":{"begin":426,"end":430},"obj":"http://purl.obolibrary.org/obo/GO_0005134"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T32887","span":{"begin":33,"end":38},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32888","span":{"begin":50,"end":55},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32889","span":{"begin":90,"end":95},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32890","span":{"begin":289,"end":294},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32891","span":{"begin":475,"end":480},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32892","span":{"begin":544,"end":549},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32893","span":{"begin":677,"end":682},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32894","span":{"begin":757,"end":762},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32895","span":{"begin":840,"end":845},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32896","span":{"begin":895,"end":900},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32897","span":{"begin":988,"end":993},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32898","span":{"begin":1032,"end":1037},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32899","span":{"begin":1137,"end":1142},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32900","span":{"begin":1334,"end":1339},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32901","span":{"begin":1422,"end":1427},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T32902","span":{"begin":1497,"end":1501},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    sentences

    {"project":"sentences","denotations":[{"id":"T32169","span":{"begin":11,"end":188},"obj":"Sentence"},{"id":"T32170","span":{"begin":189,"end":452},"obj":"Sentence"},{"id":"T32171","span":{"begin":453,"end":574},"obj":"Sentence"},{"id":"T32172","span":{"begin":575,"end":647},"obj":"Sentence"},{"id":"T32173","span":{"begin":648,"end":870},"obj":"Sentence"},{"id":"T32174","span":{"begin":871,"end":933},"obj":"Sentence"},{"id":"T32175","span":{"begin":934,"end":1078},"obj":"Sentence"},{"id":"T32176","span":{"begin":1079,"end":1374},"obj":"Sentence"},{"id":"T32177","span":{"begin":1375,"end":1469},"obj":"Sentence"},{"id":"T32178","span":{"begin":1470,"end":1539},"obj":"Sentence"},{"id":"T32179","span":{"begin":1540,"end":1572},"obj":"Sentence"},{"id":"T161","span":{"begin":0,"end":9},"obj":"Sentence"},{"id":"T162","span":{"begin":11,"end":188},"obj":"Sentence"},{"id":"T163","span":{"begin":189,"end":452},"obj":"Sentence"},{"id":"T164","span":{"begin":453,"end":574},"obj":"Sentence"},{"id":"T165","span":{"begin":575,"end":647},"obj":"Sentence"},{"id":"T166","span":{"begin":648,"end":870},"obj":"Sentence"},{"id":"T167","span":{"begin":871,"end":933},"obj":"Sentence"},{"id":"T168","span":{"begin":934,"end":1078},"obj":"Sentence"},{"id":"T169","span":{"begin":1079,"end":1374},"obj":"Sentence"},{"id":"T170","span":{"begin":1375,"end":1469},"obj":"Sentence"},{"id":"T171","span":{"begin":1470,"end":1539},"obj":"Sentence"},{"id":"T172","span":{"begin":1540,"end":1572},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T32903","span":{"begin":11,"end":15},"obj":"Protein"},{"id":"T32904","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T32905","span":{"begin":83,"end":86},"obj":"Protein"},{"id":"T32906","span":{"begin":113,"end":121},"obj":"Positive_regulation"},{"id":"T32907","span":{"begin":113,"end":121},"obj":"Positive_regulation"},{"id":"T32908","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T32909","span":{"begin":132,"end":137},"obj":"Protein"},{"id":"T32910","span":{"begin":138,"end":148},"obj":"Negative_regulation"},{"id":"T32911","span":{"begin":138,"end":148},"obj":"Negative_regulation"},{"id":"T32912","span":{"begin":280,"end":283},"obj":"Protein"},{"id":"T32913","span":{"begin":284,"end":285},"obj":"Protein"},{"id":"T32914","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T32915","span":{"begin":308,"end":315},"obj":"Protein"},{"id":"T32916","span":{"begin":335,"end":339},"obj":"Protein"},{"id":"T32917","span":{"begin":343,"end":350},"obj":"Protein"},{"id":"T32918","span":{"begin":357,"end":363},"obj":"Protein"},{"id":"T32919","span":{"begin":406,"end":409},"obj":"Protein"},{"id":"T32920","span":{"begin":410,"end":412},"obj":"Protein"},{"id":"T32921","span":{"begin":426,"end":430},"obj":"Protein"},{"id":"T32922","span":{"begin":446,"end":451},"obj":"Protein"},{"id":"T32923","span":{"begin":464,"end":473},"obj":"Protein"},{"id":"T32924","span":{"begin":531,"end":537},"obj":"Protein"},{"id":"T32925","span":{"begin":539,"end":542},"obj":"Protein"},{"id":"T32926","span":{"begin":639,"end":642},"obj":"Protein"},{"id":"T32927","span":{"begin":669,"end":675},"obj":"Protein"},{"id":"T32928","span":{"begin":734,"end":738},"obj":"Protein"},{"id":"T32929","span":{"begin":742,"end":749},"obj":"Protein"},{"id":"T32930","span":{"begin":750,"end":753},"obj":"Protein"},{"id":"T32931","span":{"begin":787,"end":792},"obj":"Protein"},{"id":"T32932","span":{"begin":827,"end":833},"obj":"Protein"},{"id":"T32933","span":{"begin":835,"end":838},"obj":"Protein"},{"id":"T32934","span":{"begin":887,"end":893},"obj":"Protein"},{"id":"T32935","span":{"begin":975,"end":981},"obj":"Protein"},{"id":"T32936","span":{"begin":983,"end":986},"obj":"Protein"},{"id":"T32937","span":{"begin":1021,"end":1030},"obj":"Protein"},{"id":"T32938","span":{"begin":1130,"end":1133},"obj":"Protein"},{"id":"T32939","span":{"begin":1161,"end":1166},"obj":"Protein"},{"id":"T32940","span":{"begin":1171,"end":1176},"obj":"Protein"},{"id":"T32941","span":{"begin":1177,"end":1182},"obj":"Negative_regulation"},{"id":"T32942","span":{"begin":1177,"end":1182},"obj":"Negative_regulation"},{"id":"T32943","span":{"begin":1327,"end":1330},"obj":"Protein"},{"id":"T32944","span":{"begin":1366,"end":1369},"obj":"Protein"},{"id":"T32945","span":{"begin":1400,"end":1403},"obj":"Protein"},{"id":"T32946","span":{"begin":1490,"end":1493},"obj":"Protein"}],"relations":[{"id":"R25183","pred":"themeOf","subj":"T32908","obj":"T32911"},{"id":"R25184","pred":"themeOf","subj":"T32909","obj":"T32910"},{"id":"R25185","pred":"themeOf","subj":"T32910","obj":"T32906"},{"id":"R25186","pred":"themeOf","subj":"T32911","obj":"T32907"},{"id":"R25187","pred":"themeOf","subj":"T32939","obj":"T32941"},{"id":"R25188","pred":"themeOf","subj":"T32940","obj":"T32942"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T32991","span":{"begin":11,"end":22},"obj":"Protein"},{"id":"T32992","span":{"begin":23,"end":26},"obj":"Protein"},{"id":"T32993","span":{"begin":43,"end":49},"obj":"Protein"},{"id":"T32994","span":{"begin":83,"end":87},"obj":"Protein"},{"id":"T32995","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T32996","span":{"begin":132,"end":137},"obj":"Protein"},{"id":"T32997","span":{"begin":144,"end":148},"obj":"Negative_regulation"},{"id":"T32998","span":{"begin":144,"end":148},"obj":"Negative_regulation"},{"id":"T32999","span":{"begin":280,"end":284},"obj":"Protein"},{"id":"T33000","span":{"begin":300,"end":311},"obj":"Protein"},{"id":"T33001","span":{"begin":312,"end":315},"obj":"Protein"},{"id":"T33002","span":{"begin":335,"end":350},"obj":"Protein"},{"id":"T33003","span":{"begin":464,"end":469},"obj":"Protein"},{"id":"T33004","span":{"begin":470,"end":473},"obj":"Protein"},{"id":"T33005","span":{"begin":531,"end":542},"obj":"Protein"},{"id":"T33006","span":{"begin":634,"end":646},"obj":"Protein"},{"id":"T33007","span":{"begin":734,"end":749},"obj":"Protein"},{"id":"T33008","span":{"begin":750,"end":754},"obj":"Protein"},{"id":"T33009","span":{"begin":827,"end":838},"obj":"Protein"},{"id":"T33010","span":{"begin":975,"end":986},"obj":"Protein"},{"id":"T33011","span":{"begin":1130,"end":1134},"obj":"Protein"},{"id":"T33012","span":{"begin":1161,"end":1166},"obj":"Protein"},{"id":"T33013","span":{"begin":1171,"end":1182},"obj":"Protein"},{"id":"T33014","span":{"begin":1327,"end":1331},"obj":"Protein"},{"id":"T33015","span":{"begin":1361,"end":1373},"obj":"Protein"},{"id":"T33016","span":{"begin":1400,"end":1404},"obj":"Protein"},{"id":"T33017","span":{"begin":1474,"end":1489},"obj":"Protein"},{"id":"T33018","span":{"begin":1490,"end":1493},"obj":"Protein"}],"relations":[{"id":"R25195","pred":"themeOf","subj":"T32995","obj":"T32997"},{"id":"R25196","pred":"themeOf","subj":"T32996","obj":"T32998"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T32125","span":{"begin":11,"end":15},"obj":"Protein"},{"id":"T32126","span":{"begin":19,"end":26},"obj":"Protein"},{"id":"T32127","span":{"begin":83,"end":86},"obj":"Protein"},{"id":"T32128","span":{"begin":113,"end":121},"obj":"Positive_regulation"},{"id":"T32129","span":{"begin":113,"end":121},"obj":"Positive_regulation"},{"id":"T32130","span":{"begin":122,"end":127},"obj":"Protein"},{"id":"T32131","span":{"begin":132,"end":137},"obj":"Protein"},{"id":"T32132","span":{"begin":138,"end":148},"obj":"Negative_regulation"},{"id":"T32133","span":{"begin":138,"end":148},"obj":"Negative_regulation"},{"id":"T32134","span":{"begin":280,"end":283},"obj":"Protein"},{"id":"T32135","span":{"begin":284,"end":285},"obj":"Protein"},{"id":"T32136","span":{"begin":300,"end":304},"obj":"Protein"},{"id":"T32137","span":{"begin":308,"end":315},"obj":"Protein"},{"id":"T32138","span":{"begin":335,"end":339},"obj":"Protein"},{"id":"T32139","span":{"begin":343,"end":350},"obj":"Protein"},{"id":"T32140","span":{"begin":357,"end":363},"obj":"Protein"},{"id":"T32141","span":{"begin":406,"end":409},"obj":"Protein"},{"id":"T32142","span":{"begin":410,"end":412},"obj":"Protein"},{"id":"T32143","span":{"begin":426,"end":430},"obj":"Protein"},{"id":"T32144","span":{"begin":446,"end":451},"obj":"Protein"},{"id":"T32145","span":{"begin":464,"end":473},"obj":"Protein"},{"id":"T32146","span":{"begin":531,"end":537},"obj":"Protein"},{"id":"T32147","span":{"begin":539,"end":542},"obj":"Protein"},{"id":"T32148","span":{"begin":639,"end":642},"obj":"Protein"},{"id":"T32149","span":{"begin":669,"end":675},"obj":"Protein"},{"id":"T32150","span":{"begin":734,"end":738},"obj":"Protein"},{"id":"T32151","span":{"begin":742,"end":749},"obj":"Protein"},{"id":"T32152","span":{"begin":750,"end":753},"obj":"Protein"},{"id":"T32153","span":{"begin":787,"end":792},"obj":"Protein"},{"id":"T32154","span":{"begin":827,"end":833},"obj":"Protein"},{"id":"T32155","span":{"begin":835,"end":838},"obj":"Protein"},{"id":"T32156","span":{"begin":887,"end":893},"obj":"Protein"},{"id":"T32157","span":{"begin":975,"end":981},"obj":"Protein"},{"id":"T32158","span":{"begin":983,"end":986},"obj":"Protein"},{"id":"T32159","span":{"begin":1021,"end":1030},"obj":"Protein"},{"id":"T32160","span":{"begin":1130,"end":1133},"obj":"Protein"},{"id":"T32161","span":{"begin":1161,"end":1166},"obj":"Protein"},{"id":"T32162","span":{"begin":1171,"end":1176},"obj":"Protein"},{"id":"T32163","span":{"begin":1177,"end":1182},"obj":"Negative_regulation"},{"id":"T32164","span":{"begin":1177,"end":1182},"obj":"Negative_regulation"},{"id":"T32165","span":{"begin":1327,"end":1330},"obj":"Protein"},{"id":"T32166","span":{"begin":1366,"end":1369},"obj":"Protein"},{"id":"T32167","span":{"begin":1400,"end":1403},"obj":"Protein"},{"id":"T32168","span":{"begin":1490,"end":1493},"obj":"Protein"}],"relations":[{"id":"R24566","pred":"themeOf","subj":"T32130","obj":"T32133"},{"id":"R24567","pred":"themeOf","subj":"T32131","obj":"T32132"},{"id":"R24568","pred":"themeOf","subj":"T32132","obj":"T32128"},{"id":"R24569","pred":"themeOf","subj":"T32133","obj":"T32129"},{"id":"R24570","pred":"themeOf","subj":"T32161","obj":"T32163"},{"id":"R24571","pred":"themeOf","subj":"T32162","obj":"T32164"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Figure 6. CbfbF/F CD4-cre mouse cells and iT reg cells generated from human naive CD4+ T cells undergoing siRNA-mediated RUNX1 and RUNX3 knock down show a diminished suppressive activity. Experimental setup (A) and results of the mouse suppression assay (B), FACS-purified naive CD4+8− T cells from CbfbF/F CD4-cre (left) and control CbfbF/+ CD4-cre mice (Cd45.2; right) were activated in vitro with anti-CD3/28 mAb, 50 U/ml IL-2, and 2.5 ng/ml TGF-β. After 3 d, Foxp3-GFP+ cells were FACS-sorted and mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. These were then incubated with inactivated splenocytes and anti-CD3 mAb. After a further 4 d, CD45.1+ cells were analyzed for CFSE dilution. (C) As a control, CbfbF/+ CD4-cre CD4+ T cells activated in absence of TGF-β were mixed with CFSE-loaded naive CD45.1+ CD4+ cells at the indicated ratios. Four days later CD45.1+ cells were analyzed for CFSE dilution. The median division number (of the naive CD45.1+ CD4+ cells in the cultures containing Foxp3-GFP+ cells) is indicated in each of the histograms. One of three experiments is shown. (D) Human naive CD4+ T cells, transfected with RUNX1 and RUNX3 siRNA and cultured under iT reg differentiating conditions were used in an in vitro suppression assay, cultured together with autologous CFSE-labeled CD4+ T cells, and stimulated with anti-CD3 mAb. The CFSE dilution of the CD4+ T cell responder cells was analyzed after 5 d by flow cytometry. The T reg/responder CD4+ T cell ratios used were 1:20, 1:10, and 1:5. One of two experiments is shown. "}

    bionlp-st-ge-2016-uniprot

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    test2

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