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PMC:2806624 / 19389-19656 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9135 0-2 TO denotes To
T9136 3-14 VB denotes investigate
T9137 15-22 IN denotes whether
T9138 23-36 JJ denotes Runx-mediated
T9139 37-46 NN denotes induction
T9140 47-49 IN denotes of
T9141 50-55 NN denotes Foxp3
T9142 56-58 VB denotes is
T9143 59-68 JJ denotes dependent
T9144 69-71 IN denotes on
T9145 72-75 DT denotes the
T9146 76-86 NN denotes expression
T9147 87-89 IN denotes of
T9148 90-94 NN denotes CBFβ
T9149 94-95 -COMMA- denotes ,
T9150 96-101 JJ denotes naive
T9151 102-106 JJ denotes CD4+
T9152 107-111 NN denotes CD8−
T9153 112-113 NN denotes T
T9154 114-119 NN denotes cells
T9155 120-124 IN denotes from
T9156 125-132 NN denotes CbfbF/F
T9157 133-140 JJ denotes CD4-cre
T9158 141-144 CC denotes and
T9159 145-152 NN denotes control
T9160 153-160 JJ denotes CbfbF/+
T9161 161-168 JJ denotes CD4-cre
T9162 169-173 NN denotes mice
T9163 174-178 VB denotes were
T9164 179-189 VB denotes stimulated
T9165 190-194 IN denotes with
T9166 195-206 JJ denotes anti-CD3/28
T9167 207-211 NN denotes mAbs
T9168 211-212 -COMMA- denotes ,
T9169 213-221 JJ denotes retinoic
T9170 222-226 NN denotes acid
T9171 226-227 -COMMA- denotes ,
T9172 228-231 CC denotes and
T9173 232-242 VB denotes increasing
T9174 243-257 NN denotes concentrations
T9175 258-260 IN denotes of
T9176 261-266 NN denotes TGF-β
R7228 T9136 T9135 arg1Of investigate,To
R7229 T9139 T9138 arg1Of induction,Runx-mediated
R7230 T9139 T9140 arg1Of induction,of
R7231 T9139 T9142 arg1Of induction,is
R7232 T9139 T9143 arg1Of induction,dependent
R7233 T9141 T9140 arg2Of Foxp3,of
R7234 T9142 T9136 arg2Of is,investigate
R7235 T9142 T9137 arg1Of is,whether
R7236 T9143 T9142 arg2Of dependent,is
R7237 T9143 T9144 arg1Of dependent,on
R7238 T9146 T9144 arg2Of expression,on
R7239 T9146 T9145 arg1Of expression,the
R7240 T9146 T9147 arg1Of expression,of
R7241 T9148 T9147 arg2Of CBFβ,of
R7242 T9154 T9136 arg1Of cells,investigate
R7243 T9154 T9150 arg1Of cells,naive
R7244 T9154 T9151 arg1Of cells,CD4+
R7245 T9154 T9152 arg1Of cells,CD8−
R7246 T9154 T9153 arg1Of cells,T
R7247 T9154 T9155 arg1Of cells,from
R7248 T9154 T9163 arg1Of cells,were
R7249 T9154 T9164 arg2Of cells,stimulated
R7250 T9157 T9158 arg1Of CD4-cre,and
R7251 T9158 T9156 arg1Of and,CbfbF/F
R7252 T9159 T9158 arg2Of control,and
R7253 T9162 T9155 arg2Of mice,from
R7254 T9162 T9157 arg1Of mice,CD4-cre
R7255 T9162 T9159 arg1Of mice,control
R7256 T9162 T9160 arg1Of mice,CbfbF/+
R7257 T9162 T9161 arg1Of mice,CD4-cre
R7258 T9164 T9135 modOf stimulated,To
R7259 T9164 T9149 arg1Of stimulated,","
R7260 T9164 T9163 arg2Of stimulated,were
R7261 T9164 T9165 arg1Of stimulated,with
R7262 T9167 T9166 arg1Of mAbs,anti-CD3/28
R7263 T9167 T9168 arg1Of mAbs,","
R7264 T9168 T9172 arg1Of ",",and
R7265 T9170 T9168 arg2Of acid,","
R7266 T9170 T9169 arg1Of acid,retinoic
R7267 T9172 T9165 arg2Of and,with
R7268 T9172 T9171 arg1Of and,","
R7269 T9174 T9172 arg2Of concentrations,and
R7270 T9174 T9173 arg1Of concentrations,increasing
R7271 T9174 T9175 arg1Of concentrations,of
R7272 T9176 T9175 arg2Of TGF-β,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9638 0-2 TO denotes To
T9639 3-14 VB denotes investigate
T9640 15-22 IN denotes whether
T9641 23-36 JJ denotes Runx-mediated
T9642 37-46 NN denotes induction
T9643 47-49 IN denotes of
T9644 50-55 NNP denotes Foxp3
T9645 56-58 VBZ denotes is
T9646 59-68 JJ denotes dependent
T9647 69-71 IN denotes on
T9648 72-75 DT denotes the
T9649 76-86 NN denotes expression
T9650 87-89 IN denotes of
T9651 90-94 NNP denotes CBFβ
T9652 94-95 , denotes ,
T9653 96-101 JJ denotes naive
T9654 102-105 NNP denotes CD4
T9655 105-106 NNP denotes +
T9656 107-110 NNP denotes CD8
T9657 110-111 VBD denotes −
T9658 112-113 NNP denotes T
T9659 114-119 NNS denotes cells
T9660 120-124 IN denotes from
T9661 125-132 NNP denotes CbfbF/F
T9662 133-140 NNP denotes CD4-cre
T9663 141-144 CC denotes and
T9664 145-152 NN denotes control
T9665 153-158 NNP denotes CbfbF
T9666 158-159 NNP denotes /
T9667 159-160 VBD denotes +
T9668 161-168 JJ denotes CD4-cre
T9669 169-173 NNS denotes mice
T9670 174-178 VBD denotes were
T9671 179-189 VBN denotes stimulated
T9672 190-194 IN denotes with
T9673 195-203 JJ denotes anti-CD3
T9674 203-204 NN denotes /
T9675 204-206 CD denotes 28
T9676 207-211 NNS denotes mAbs
T9677 211-212 , denotes ,
T9678 213-221 JJ denotes retinoic
T9679 222-226 NN denotes acid
T9680 226-227 , denotes ,
T9681 228-231 CC denotes and
T9682 232-242 VBG denotes increasing
T9683 243-257 NNS denotes concentrations
T9684 258-260 IN denotes of
T9685 261-266 NNP denotes TGF-β
T9686 266-267 . denotes .
R7640 T9638 T9639 aux To,investigate
R7641 T9639 T9639 ROOT investigate,investigate
R7642 T9640 T9645 mark whether,is
R7643 T9641 T9642 amod Runx-mediated,induction
R7644 T9642 T9645 nsubj induction,is
R7645 T9643 T9642 prep of,induction
R7646 T9644 T9643 pobj Foxp3,of
R7647 T9645 T9639 ccomp is,investigate
R7648 T9646 T9645 acomp dependent,is
R7649 T9647 T9646 prep on,dependent
R7650 T9648 T9649 det the,expression
R7651 T9649 T9647 pobj expression,on
R7652 T9650 T9649 prep of,expression
R7653 T9651 T9650 pobj CBFβ,of
R7654 T9652 T9646 punct ",",dependent
R7655 T9653 T9659 amod naive,cells
R7656 T9654 T9657 intj CD4,−
R7657 T9655 T9657 npadvmod +,−
R7658 T9656 T9657 nsubj CD8,−
R7659 T9657 T9659 amod −,cells
R7660 T9658 T9659 compound T,cells
R7661 T9659 T9671 nsubjpass cells,stimulated
R7662 T9660 T9659 prep from,cells
R7663 T9661 T9662 compound CbfbF/F,CD4-cre
R7664 T9662 T9660 pobj CD4-cre,from
R7665 T9663 T9662 cc and,CD4-cre
R7666 T9664 T9666 compound control,/
R7667 T9665 T9666 compound CbfbF,/
R7668 T9666 T9662 conj /,CD4-cre
R7669 T9667 T9669 amod +,mice
R7670 T9668 T9669 amod CD4-cre,mice
R7671 T9669 T9659 conj mice,cells
R7672 T9670 T9671 auxpass were,stimulated
R7673 T9671 T9645 conj stimulated,is
R7674 T9672 T9671 prep with,stimulated
R7675 T9673 T9676 amod anti-CD3,mAbs
R7676 T9674 T9676 nmod /,mAbs
R7677 T9675 T9674 nummod 28,/
R7678 T9676 T9672 pobj mAbs,with
R7679 T9677 T9676 punct ",",mAbs
R7680 T9678 T9679 amod retinoic,acid
R7681 T9679 T9676 conj acid,mAbs
R7682 T9680 T9679 punct ",",acid
R7683 T9681 T9679 cc and,acid
R7684 T9682 T9683 amod increasing,concentrations
R7685 T9683 T9679 conj concentrations,acid
R7686 T9684 T9683 prep of,concentrations
R7687 T9685 T9684 pobj TGF-β,of
R7688 T9686 T9671 punct .,stimulated

GO-CC

Id Subject Object Predicate Lexical cue
T10094 114-119 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9038 0-267 Sentence denotes To investigate whether Runx-mediated induction of Foxp3 is dependent on the expression of CBFβ, naive CD4+ CD8− T cells from CbfbF/F CD4-cre and control CbfbF/+ CD4-cre mice were stimulated with anti-CD3/28 mAbs, retinoic acid, and increasing concentrations of TGF-β.
T130 0-267 Sentence denotes To investigate whether Runx-mediated induction of Foxp3 is dependent on the expression of CBFβ, naive CD4+ CD8− T cells from CbfbF/F CD4-cre and control CbfbF/+ CD4-cre mice were stimulated with anti-CD3/28 mAbs, retinoic acid, and increasing concentrations of TGF-β.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T10128 23-27 Protein denotes Runx
T10129 28-36 Positive_regulation denotes mediated
T10130 37-46 Gene_expression denotes induction
T10131 50-55 Protein denotes Foxp3
T10132 59-68 Positive_regulation denotes dependent true
T10133 76-86 Gene_expression denotes expression
T10134 90-94 Protein denotes CBFβ
T10135 102-105 Protein denotes CD4
T10136 107-110 Protein denotes CD8
T10137 125-129 Protein denotes Cbfb
T10138 133-140 Protein denotes CD4-cre
T10139 153-157 Protein denotes Cbfb
T10140 161-168 Protein denotes CD4-cre
T10141 200-203 Protein denotes CD3
T10142 204-206 Protein denotes 28
T10143 261-266 Protein denotes TGF-β
R8048 T10128 T10129 causeOf Runx,mediated
R8049 T10130 T10129 themeOf induction,mediated
R8050 T10130 T10132 themeOf induction,dependent
R8051 T10131 T10130 themeOf Foxp3,induction
R8052 T10133 T10132 causeOf expression,dependent
R8053 T10134 T10133 themeOf CBFβ,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10324 50-55 Protein denotes Foxp3
T10325 90-94 Protein denotes CBFβ
T10326 102-105 Protein denotes CD4
T10327 107-110 Protein denotes CD8
T10328 125-136 Protein denotes CbfbF/F CD4
T10329 137-140 Protein denotes cre
T10330 153-168 Protein denotes CbfbF/+ CD4-cre
T10331 261-266 Protein denotes TGF-β
T10332 37-46 Positive_regulation denotes induction
T10333 76-86 Gene_expression denotes expression
R8140 T10324 T10332 themeOf Foxp3,induction
R8141 T10325 T10333 themeOf CBFβ,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T8954 23-27 Protein denotes Runx
T8955 28-36 Positive_regulation denotes mediated
T8956 37-46 Gene_expression denotes induction
T8957 50-55 Protein denotes Foxp3
T8958 59-68 Positive_regulation denotes dependent true
T8959 76-86 Gene_expression denotes expression
T8960 90-94 Protein denotes CBFβ
T8961 102-105 Protein denotes CD4
T8962 107-110 Protein denotes CD8
T8963 125-129 Protein denotes Cbfb
T8964 133-140 Protein denotes CD4-cre
T8965 153-157 Protein denotes Cbfb
T8966 161-168 Protein denotes CD4-cre
T8967 200-203 Protein denotes CD3
T8968 204-206 Protein denotes 28
T8969 261-266 Protein denotes TGF-β
R7104 T8954 T8955 causeOf Runx,mediated
R7105 T8956 T8955 themeOf induction,mediated
R7106 T8956 T8958 themeOf induction,dependent
R7107 T8957 T8956 themeOf Foxp3,induction
R7108 T8959 T8958 causeOf expression,dependent
R7109 T8960 T8959 themeOf CBFβ,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9469 23-27 Q13761 denotes Runx
T9470 23-27 Q13950 denotes Runx
T9471 23-27 Q01196 denotes Runx
T9472 50-55 Q9BZS1 denotes Foxp3
T9473 90-94 Q13951 denotes CBFβ
T9474 102-105 P01730 denotes CD4
T9475 107-110 P01732 denotes CD8
T9476 107-110 P10966 denotes CD8
T9477 133-136 P01730 denotes CD4
T9478 137-140 P06956 denotes cre
T9479 161-164 P01730 denotes CD4
T9480 165-168 P06956 denotes cre
T9481 200-203 P04234 denotes CD3
T9482 200-203 P20963 denotes CD3
T9483 200-203 P07766 denotes CD3
T9484 200-203 P09693 denotes CD3
T9485 261-266 P01137 denotes TGF-β

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T8851 23-27 Protein denotes Runx
T8852 28-36 Positive_regulation denotes mediated
T8853 37-46 Positive_regulation denotes induction
T8854 50-55 Protein denotes Foxp3
T8855 59-68 Positive_regulation denotes dependent true
T8856 76-86 Gene_expression denotes expression
T8857 90-94 Protein denotes CBFβ
T8858 102-105 Protein denotes CD4 true
T8859 107-110 Protein denotes CD8
T8860 125-130 Protein denotes CbfbF true
T8861 133-140 Protein denotes CD4-cre
T8862 153-158 Protein denotes CbfbF
T8863 161-168 Protein denotes CD4-cre
T8864 200-203 Protein denotes CD3
T8865 204-206 Protein denotes 28
T8866 261-266 Protein denotes TGF-β
R7067 T8851 T8852 causeOf Runx,mediated
R7068 T8852 T8855 themeOf mediated,dependent
R7069 T8853 T8855 themeOf induction,dependent
R7070 T8853 T8852 themeOf induction,mediated
R7071 T8854 T8853 themeOf Foxp3,induction
R7072 T8857 T8856 themeOf CBFβ,expression