PMC:2806624 / 1194-1342
Annnotations
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T408","span":{"begin":1,"end":2},"obj":"NN"},{"id":"T409","span":{"begin":3,"end":6},"obj":"NN"},{"id":"T410","span":{"begin":7,"end":12},"obj":"NN"},{"id":"T411","span":{"begin":13,"end":26},"obj":"RB"},{"id":"T412","span":{"begin":27,"end":36},"obj":"VB"},{"id":"T413","span":{"begin":37,"end":43},"obj":"JJ"},{"id":"T414","span":{"begin":44,"end":50},"obj":"NN"},{"id":"T415","span":{"begin":51,"end":53},"obj":"IN"},{"id":"T416","span":{"begin":54,"end":59},"obj":"NN"},{"id":"T417","span":{"begin":59,"end":60},"obj":"-COMMA-"},{"id":"T418","span":{"begin":61,"end":66},"obj":"NN"},{"id":"T419","span":{"begin":66,"end":67},"obj":"-COMMA-"},{"id":"T420","span":{"begin":68,"end":71},"obj":"CC"},{"id":"T421","span":{"begin":72,"end":77},"obj":"NN"},{"id":"T422","span":{"begin":78,"end":82},"obj":"NN"},{"id":"T423","span":{"begin":83,"end":91},"obj":"VB"},{"id":"T424","span":{"begin":92,"end":96},"obj":"IN"},{"id":"T425","span":{"begin":97,"end":106},"obj":"NN"},{"id":"T426","span":{"begin":107,"end":112},"obj":"NN"},{"id":"T427","span":{"begin":114,"end":125},"obj":"RB"},{"id":"T428","span":{"begin":125,"end":126},"obj":"-COMMA-"},{"id":"T429","span":{"begin":127,"end":132},"obj":"NN"},{"id":"T430","span":{"begin":133,"end":136},"obj":"CC"},{"id":"T431","span":{"begin":137,"end":142},"obj":"NN"},{"id":"T432","span":{"begin":143,"end":147},"obj":"VB"}],"relations":[{"id":"R265","pred":"arg1Of","subj":"T410","obj":"T408"},{"id":"R266","pred":"arg1Of","subj":"T410","obj":"T409"},{"id":"R267","pred":"arg1Of","subj":"T410","obj":"T412"},{"id":"R268","pred":"arg1Of","subj":"T412","obj":"T411"},{"id":"R269","pred":"arg2Of","subj":"T414","obj":"T412"},{"id":"R270","pred":"arg1Of","subj":"T414","obj":"T413"},{"id":"R271","pred":"arg1Of","subj":"T414","obj":"T415"},{"id":"R272","pred":"arg1Of","subj":"T416","obj":"T417"},{"id":"R273","pred":"arg1Of","subj":"T417","obj":"T420"},{"id":"R274","pred":"arg2Of","subj":"T418","obj":"T417"},{"id":"R275","pred":"arg2Of","subj":"T420","obj":"T415"},{"id":"R276","pred":"arg1Of","subj":"T420","obj":"T419"},{"id":"R277","pred":"arg1Of","subj":"T420","obj":"T423"},{"id":"R278","pred":"arg2Of","subj":"T422","obj":"T420"},{"id":"R279","pred":"arg1Of","subj":"T422","obj":"T421"},{"id":"R280","pred":"arg2Of","subj":"T424","obj":"T423"},{"id":"R281","pred":"arg2Of","subj":"T426","obj":"T424"},{"id":"R282","pred":"arg1Of","subj":"T426","obj":"T425"},{"id":"R283","pred":"arg1Of","subj":"T429","obj":"T430"},{"id":"R284","pred":"arg1Of","subj":"T430","obj":"T432"},{"id":"R286","pred":"arg2Of","subj":"T431","obj":"T430"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T728","span":{"begin":1,"end":2},"obj":"NNP"},{"id":"T729","span":{"begin":3,"end":6},"obj":"NN"},{"id":"T730","span":{"begin":7,"end":12},"obj":"NNS"},{"id":"T731","span":{"begin":13,"end":26},"obj":"RB"},{"id":"T732","span":{"begin":27,"end":36},"obj":"VBD"},{"id":"T733","span":{"begin":37,"end":43},"obj":"JJR"},{"id":"T734","span":{"begin":44,"end":50},"obj":"NNS"},{"id":"T735","span":{"begin":51,"end":53},"obj":"IN"},{"id":"T736","span":{"begin":54,"end":59},"obj":"NNP"},{"id":"T737","span":{"begin":59,"end":60},"obj":","},{"id":"T738","span":{"begin":61,"end":66},"obj":"NNP"},{"id":"T739","span":{"begin":66,"end":67},"obj":","},{"id":"T740","span":{"begin":68,"end":71},"obj":"CC"},{"id":"T741","span":{"begin":72,"end":77},"obj":"NNP"},{"id":"T742","span":{"begin":78,"end":82},"obj":"NNP"},{"id":"T743","span":{"begin":83,"end":91},"obj":"VBN"},{"id":"T744","span":{"begin":92,"end":96},"obj":"IN"},{"id":"T745","span":{"begin":97,"end":100},"obj":"CD"},{"id":"T746","span":{"begin":100,"end":101},"obj":"CD"},{"id":"T747","span":{"begin":101,"end":105},"obj":"NNS"},{"id":"T748","span":{"begin":105,"end":106},"obj":"VBP"},{"id":"T749","span":{"begin":107,"end":112},"obj":"NNS"},{"id":"T750","span":{"begin":112,"end":113},"obj":"."},{"id":"T751","span":{"begin":114,"end":125},"obj":"RB"},{"id":"T752","span":{"begin":125,"end":126},"obj":","},{"id":"T753","span":{"begin":127,"end":132},"obj":"CD"},{"id":"T754","span":{"begin":133,"end":136},"obj":"CC"},{"id":"T755","span":{"begin":137,"end":142},"obj":"CD"},{"id":"T756","span":{"begin":143,"end":147},"obj":"VBD"}],"relations":[{"id":"R523","pred":"compound","subj":"T728","obj":"T730"},{"id":"R524","pred":"compound","subj":"T729","obj":"T730"},{"id":"R526","pred":"advmod","subj":"T731","obj":"T732"},{"id":"R527","pred":"ROOT","subj":"T732","obj":"T732"},{"id":"R528","pred":"amod","subj":"T733","obj":"T734"},{"id":"R529","pred":"dobj","subj":"T734","obj":"T732"},{"id":"R530","pred":"prep","subj":"T735","obj":"T734"},{"id":"R531","pred":"pobj","subj":"T736","obj":"T735"},{"id":"R532","pred":"punct","subj":"T737","obj":"T736"},{"id":"R533","pred":"conj","subj":"T738","obj":"T736"},{"id":"R534","pred":"punct","subj":"T739","obj":"T738"},{"id":"R535","pred":"cc","subj":"T740","obj":"T738"},{"id":"R536","pred":"compound","subj":"T741","obj":"T742"},{"id":"R537","pred":"conj","subj":"T742","obj":"T738"},{"id":"R538","pred":"prep","subj":"T743","obj":"T732"},{"id":"R539","pred":"prep","subj":"T744","obj":"T743"},{"id":"R540","pred":"punct","subj":"T745","obj":"T748"},{"id":"R541","pred":"nummod","subj":"T746","obj":"T747"},{"id":"R542","pred":"nsubj","subj":"T747","obj":"T748"},{"id":"R543","pred":"amod","subj":"T748","obj":"T749"},{"id":"R544","pred":"pobj","subj":"T749","obj":"T744"},{"id":"R545","pred":"punct","subj":"T750","obj":"T732"},{"id":"R549","pred":"cc","subj":"T754","obj":"T753"},{"id":"R550","pred":"conj","subj":"T755","obj":"T753"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T881","span":{"begin":7,"end":12},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T882","span":{"begin":107,"end":112},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T1015","span":{"begin":27,"end":36},"obj":"Transcription"},{"id":"T1016","span":{"begin":27,"end":36},"obj":"Transcription"},{"id":"T1017","span":{"begin":27,"end":36},"obj":"Transcription"},{"id":"T1018","span":{"begin":54,"end":59},"obj":"Protein"},{"id":"T1019","span":{"begin":61,"end":66},"obj":"Protein"},{"id":"T1020","span":{"begin":72,"end":77},"obj":"Protein"},{"id":"T1021","span":{"begin":97,"end":100},"obj":"Protein"},{"id":"T1022","span":{"begin":101,"end":105},"obj":"Protein"},{"id":"T1023","span":{"begin":127,"end":132},"obj":"Protein"},{"id":"T1024","span":{"begin":137,"end":142},"obj":"Protein"}],"relations":[{"id":"R697","pred":"themeOf","subj":"T1018","obj":"T1015"},{"id":"R698","pred":"themeOf","subj":"T1019","obj":"T1016"},{"id":"R699","pred":"themeOf","subj":"T1020","obj":"T1017"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T160","span":{"begin":27,"end":36},"obj":"Transcription"},{"id":"T161","span":{"begin":27,"end":36},"obj":"Transcription"},{"id":"T162","span":{"begin":27,"end":36},"obj":"Transcription"},{"id":"T205","span":{"begin":61,"end":66},"obj":"Protein"},{"id":"T206","span":{"begin":72,"end":77},"obj":"Protein"},{"id":"T207","span":{"begin":97,"end":100},"obj":"Protein"},{"id":"T209","span":{"begin":101,"end":105},"obj":"Protein"},{"id":"T210","span":{"begin":127,"end":132},"obj":"Protein"},{"id":"T211","span":{"begin":137,"end":142},"obj":"Protein"},{"id":"T204","span":{"begin":54,"end":59},"obj":"Protein"}],"relations":[{"id":"R67","pred":"themeOf","subj":"T205","obj":"T161"},{"id":"R68","pred":"themeOf","subj":"T206","obj":"T162"},{"id":"R741","pred":"themeOf","subj":"T204","obj":"T160"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T499","span":{"begin":54,"end":59},"obj":"Q13761"},{"id":"T500","span":{"begin":61,"end":66},"obj":"Q9BZS1"},{"id":"T501","span":{"begin":72,"end":77},"obj":"P01137"},{"id":"T502","span":{"begin":97,"end":100},"obj":"P01730"},{"id":"T503","span":{"begin":101,"end":105},"obj":"P01589"},{"id":"T504","span":{"begin":127,"end":132},"obj":"Q9BZS1"},{"id":"T505","span":{"begin":137,"end":142},"obj":"Q13761"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}
test2
{"project":"test2","denotations":[{"id":"T123","span":{"begin":27,"end":36},"obj":"Gene_expression"},{"id":"T124","span":{"begin":54,"end":59},"obj":"Protein"},{"id":"T125","span":{"begin":61,"end":66},"obj":"Protein"},{"id":"T126","span":{"begin":72,"end":77},"obj":"Protein"},{"id":"T127","span":{"begin":97,"end":100},"obj":"Protein"},{"id":"T128","span":{"begin":101,"end":105},"obj":"Protein"},{"id":"T129","span":{"begin":127,"end":132},"obj":"Protein"},{"id":"T130","span":{"begin":137,"end":142},"obj":"Protein"}],"relations":[{"id":"R43","pred":"themeOf","subj":"T124","obj":"T123"},{"id":"R44","pred":"themeOf","subj":"T125","obj":"T123"},{"id":"R45","pred":"themeOf","subj":"T126","obj":"T123"}],"text":" T reg cells significantly expressed higher levels of RUNX3, FOXP3, and TGF-β mRNA compared with CD4+CD25− cells. Furthermore, FOXP3 and RUNX3 were "}