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PMC:2806624 / 10031-10286 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4259 0-2 IN denotes In
T4260 3-11 NN denotes addition
T4261 11-12 -COMMA- denotes ,
T4262 13-16 DT denotes the
T4263 17-23 NN denotes levels
T4264 24-26 IN denotes of
T4265 27-31 NN denotes IL-4
T4266 31-32 -COMMA- denotes ,
T4267 33-37 NN denotes IL-5
T4268 37-38 -COMMA- denotes ,
T4269 39-44 NN denotes IL-10
T4270 44-45 -COMMA- denotes ,
T4271 46-51 NN denotes IL-13
T4272 51-52 -COMMA- denotes ,
T4273 53-56 CC denotes and
T4274 57-62 NN denotes IFN-γ
T4275 63-65 IN denotes in
T4276 66-73 NN denotes control
T4277 74-91 JJ denotes siRNA-transfected
T4278 92-94 CC denotes or
T4279 95-100 NN denotes RUNX1
T4280 101-104 CC denotes and
T4281 105-110 NN denotes RUNX3
T4282 111-128 JJ denotes siRNA-transfected
T4283 129-133 JJ denotes CD4+
T4284 134-135 NN denotes T
T4285 136-141 NN denotes cells
T4286 142-146 WDT denotes that
T4287 147-151 VB denotes were
T4288 152-160 VB denotes cultured
T4289 161-165 IN denotes with
T4290 166-168 CC denotes or
T4291 169-176 IN denotes without
T4292 177-190 JJ denotes anti-CD2/3/28
T4293 191-194 NN denotes mAb
T4294 195-198 CC denotes and
T4295 199-204 NN denotes TGF-β
T4296 205-208 VB denotes did
T4297 209-212 RB denotes not
T4298 213-217 VB denotes show
T4299 218-221 DT denotes any
T4300 222-233 JJ denotes significant
T4301 234-244 NN denotes difference
T4302 245-246 -LRB- denotes (
T4303 246-250 NN denotes Fig.
T4304 251-253 NN denotes S3
T4305 253-254 -RRB- denotes )
R3366 T4260 T4259 arg2Of addition,In
R3367 T4263 T4262 arg1Of levels,the
R3368 T4263 T4264 arg1Of levels,of
R3369 T4263 T4275 arg1Of levels,in
R3370 T4263 T4296 arg1Of levels,did
R3371 T4263 T4298 arg1Of levels,show
R3372 T4265 T4266 arg1Of IL-4,","
R3373 T4266 T4268 arg1Of ",",","
R3374 T4267 T4266 arg2Of IL-5,","
R3375 T4268 T4270 arg1Of ",",","
R3376 T4269 T4268 arg2Of IL-10,","
R3377 T4270 T4273 arg1Of ",",and
R3378 T4271 T4270 arg2Of IL-13,","
R3379 T4273 T4264 arg2Of and,of
R3380 T4273 T4272 arg1Of and,","
R3381 T4274 T4273 arg2Of IFN-γ,and
R3382 T4277 T4278 arg1Of siRNA-transfected,or
R3383 T4279 T4280 arg1Of RUNX1,and
R3384 T4281 T4280 arg2Of RUNX3,and
R3385 T4282 T4278 arg2Of siRNA-transfected,or
R3386 T4282 T4279 arg1Of siRNA-transfected,RUNX1
R3387 T4282 T4281 arg1Of siRNA-transfected,RUNX3
R3388 T4285 T4275 arg2Of cells,in
R3389 T4285 T4276 arg1Of cells,control
R3390 T4285 T4277 arg1Of cells,siRNA-transfected
R3391 T4285 T4282 arg1Of cells,siRNA-transfected
R3392 T4285 T4283 arg1Of cells,CD4+
R3393 T4285 T4284 arg1Of cells,T
R3394 T4285 T4286 arg1Of cells,that
R3395 T4285 T4287 arg1Of cells,were
R3396 T4285 T4288 arg2Of cells,cultured
R3397 T4288 T4287 arg2Of cultured,were
R3398 T4288 T4289 arg1Of cultured,with
R3399 T4288 T4291 arg1Of cultured,without
R3400 T4289 T4290 arg1Of with,or
R3401 T4291 T4290 arg2Of without,or
R3402 T4293 T4294 arg1Of mAb,and
R3403 T4294 T4289 arg2Of and,with
R3404 T4294 T4291 arg2Of and,without
R3405 T4294 T4292 arg1Of and,anti-CD2/3/28
R3406 T4295 T4294 arg2Of TGF-β,and
R3407 T4298 T4259 arg1Of show,In
R3408 T4298 T4261 arg1Of show,","
R3409 T4298 T4296 arg2Of show,did
R3410 T4298 T4297 arg1Of show,not
R3411 T4301 T4298 arg2Of difference,show
R3412 T4301 T4299 arg1Of difference,any
R3413 T4301 T4300 arg1Of difference,significant
R3414 T4301 T4302 arg1Of difference,(
R3415 T4304 T4302 arg2Of S3,(
R3416 T4304 T4303 arg1Of S3,Fig.
R3417 T4305 T4302 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5054 0-2 IN denotes In
T5055 3-11 NN denotes addition
T5056 11-12 , denotes ,
T5057 13-16 DT denotes the
T5058 17-23 NNS denotes levels
T5059 24-26 IN denotes of
T5060 27-31 NN denotes IL-4
T5061 31-32 , denotes ,
T5062 33-37 NNP denotes IL-5
T5063 37-38 , denotes ,
T5064 39-44 NNP denotes IL-10
T5065 44-45 , denotes ,
T5066 46-51 NNP denotes IL-13
T5067 51-52 , denotes ,
T5068 53-56 CC denotes and
T5069 57-62 NNP denotes IFN-γ
T5070 63-65 IN denotes in
T5071 66-73 NN denotes control
T5072 74-91 JJ denotes siRNA-transfected
T5073 92-94 CC denotes or
T5074 95-100 CD denotes RUNX1
T5075 101-104 CC denotes and
T5076 105-110 CD denotes RUNX3
T5077 111-128 JJ denotes siRNA-transfected
T5078 129-132 NNP denotes CD4
T5079 132-133 CD denotes +
T5080 134-135 NNP denotes T
T5081 136-141 NNS denotes cells
T5082 142-146 WDT denotes that
T5083 147-151 VBD denotes were
T5084 152-160 VBN denotes cultured
T5085 161-165 IN denotes with
T5086 166-168 CC denotes or
T5087 169-176 IN denotes without
T5088 177-185 JJ denotes anti-CD2
T5089 185-186 NN denotes /
T5090 186-190 CD denotes 3/28
T5091 191-194 NNP denotes mAb
T5092 195-198 CC denotes and
T5093 199-204 NNP denotes TGF-β
T5094 205-208 VBD denotes did
T5095 209-212 RB denotes not
T5096 213-217 VB denotes show
T5097 218-221 DT denotes any
T5098 222-233 JJ denotes significant
T5099 234-244 NN denotes difference
T5100 245-246 -LRB- denotes (
T5101 246-249 NNP denotes Fig
T5102 249-250 . denotes .
T5103 251-253 CD denotes S3
T5104 253-254 -RRB- denotes )
T5105 254-255 . denotes .
R4023 T5054 T5072 prep In,siRNA-transfected
R4024 T5055 T5054 pobj addition,In
R4026 T5056 T5072 punct ",",siRNA-transfected
R4027 T5057 T5058 det the,levels
R4028 T5058 T5072 nsubj levels,siRNA-transfected
R4030 T5059 T5058 prep of,levels
R4031 T5060 T5059 pobj IL-4,of
R4032 T5061 T5060 punct ",",IL-4
R4034 T5062 T5060 conj IL-5,IL-4
R4035 T5063 T5062 punct ",",IL-5
R4036 T5064 T5062 conj IL-10,IL-5
R4038 T5065 T5064 punct ",",IL-10
R4039 T5066 T5064 conj IL-13,IL-10
R4040 T5067 T5066 punct ",",IL-13
R4042 T5068 T5066 cc and,IL-13
R4043 T5069 T5066 conj IFN-γ,IL-13
R4044 T5070 T5062 prep in,IL-5
R4046 T5071 T5070 pobj control,in
R4047 T5072 T5072 ROOT siRNA-transfected,siRNA-transfected
R4048 T5073 T5072 cc or,siRNA-transfected
R4050 T5074 T5072 conj RUNX1,siRNA-transfected
R4051 T5075 T5074 cc and,RUNX1
R4052 T5076 T5074 conj RUNX3,RUNX1
R4054 T5077 T5081 amod siRNA-transfected,cells
R4055 T5078 T5081 compound CD4,cells
R4056 T5079 T5081 nummod +,cells
R4057 T5080 T5081 compound T,cells
R4058 T5081 T5096 nsubj cells,show
R4061 T5082 T5084 nsubjpass that,cultured
R4062 T5083 T5084 auxpass were,cultured
R4064 T5084 T5081 relcl cultured,cells
R4065 T5085 T5084 prep with,cultured
R4066 T5086 T5085 cc or,with
R4067 T5087 T5085 conj without,with
R4068 T5088 T5089 amod anti-CD2,/
R4069 T5089 T5091 compound /,mAb
R4071 T5090 T5091 nummod 3/28,mAb
R4072 T5091 T5096 nsubj mAb,show
R4073 T5092 T5091 cc and,mAb
R4075 T5093 T5091 conj TGF-β,mAb
R4076 T5094 T5096 aux did,show
R4077 T5095 T5096 neg not,show
R4078 T5096 T5096 ROOT show,show
R4080 T5097 T5099 det any,difference
R4081 T5098 T5099 amod significant,difference
R4082 T5099 T5096 dobj difference,show
R4084 T5100 T5101 punct (,Fig
R4085 T5101 T5099 appos Fig,difference
R4086 T5102 T5096 punct .,show
R4088 T5103 T5103 ROOT S3,S3
R4090 T5104 T5103 punct ),S3
R4091 T5105 T5103 punct .,S3

GO-MF

Id Subject Object Predicate Lexical cue
T5466 27-31 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T5467 33-37 http://purl.obolibrary.org/obo/GO_0005137 denotes IL-5
T5468 39-44 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T5470 46-51 http://purl.obolibrary.org/obo/GO_0005144 denotes IL-13

sentences

Id Subject Object Predicate Lexical cue
T3621 0-255 Sentence denotes In addition, the levels of IL-4, IL-5, IL-10, IL-13, and IFN-γ in control siRNA-transfected or RUNX1 and RUNX3 siRNA-transfected CD4+ T cells that were cultured with or without anti-CD2/3/28 mAb and TGF-β did not show any significant difference (Fig. S3).
T67 0-255 Sentence denotes In addition, the levels of IL-4, IL-5, IL-10, IL-13, and IFN-γ in control siRNA-transfected or RUNX1 and RUNX3 siRNA-transfected CD4+ T cells that were cultured with or without anti-CD2/3/28 mAb and TGF-β did not show any significant difference (Fig. S3).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T5786 17-23 Gene_expression denotes levels
T5787 27-31 Protein denotes IL-4
T5788 33-37 Protein denotes IL-5
T5789 39-44 Protein denotes IL-10
T5790 46-51 Protein denotes IL-13
T5791 57-62 Protein denotes IFN-γ
T5792 95-100 Protein denotes RUNX1
T5793 105-110 Protein denotes RUNX3
T5794 111-128 Negative_regulation denotes siRNA-transfected
T5795 111-128 Negative_regulation denotes siRNA-transfected
T5796 129-132 Protein denotes CD4
T5797 182-185 Protein denotes CD2
T5798 186-187 Protein denotes 3
T5799 188-190 Protein denotes 28
T5800 199-204 Protein denotes TGF-β
T5801 213-244 Regulation denotes show any significant difference true
T5802 213-244 Regulation denotes show any significant difference true
T5803 213-244 Regulation denotes show any significant difference true
T5804 213-244 Regulation denotes show any significant difference true
T5805 213-244 Regulation denotes show any significant difference true
T5806 213-244 Regulation denotes show any significant difference true
T5807 213-244 Regulation denotes show any significant difference true
T5808 213-244 Regulation denotes show any significant difference true
T5809 213-244 Regulation denotes show any significant difference true
T5810 213-244 Regulation denotes show any significant difference true
T5811 213-244 Regulation denotes show any significant difference true
T5812 213-244 Regulation denotes show any significant difference true
T5813 213-244 Regulation denotes show any significant difference true
T5814 213-244 Regulation denotes show any significant difference true
T5815 213-244 Regulation denotes show any significant difference true
T5782 17-23 Gene_expression denotes levels
T5783 17-23 Gene_expression denotes levels
T5784 17-23 Gene_expression denotes levels
T5785 17-23 Gene_expression denotes levels
R4579 T5782 T5801 themeOf levels,show any significant difference
R4580 T5782 T5802 themeOf levels,show any significant difference
R4581 T5782 T5803 themeOf levels,show any significant difference
R4582 T5783 T5804 themeOf levels,show any significant difference
R4583 T5783 T5805 themeOf levels,show any significant difference
R4584 T5783 T5806 themeOf levels,show any significant difference
R4585 T5784 T5807 themeOf levels,show any significant difference
R4586 T5784 T5808 themeOf levels,show any significant difference
R4587 T5784 T5809 themeOf levels,show any significant difference
R4589 T5785 T5810 themeOf levels,show any significant difference
R4590 T5785 T5811 themeOf levels,show any significant difference
R4591 T5785 T5812 themeOf levels,show any significant difference
R4594 T5786 T5813 themeOf levels,show any significant difference
R4595 T5786 T5814 themeOf levels,show any significant difference
R4596 T5786 T5815 themeOf levels,show any significant difference
R4597 T5787 T5782 themeOf IL-4,levels
R4599 T5788 T5783 themeOf IL-5,levels
R4600 T5789 T5784 themeOf IL-10,levels
R4602 T5790 T5785 themeOf IL-13,levels
R4603 T5791 T5786 themeOf IFN-γ,levels
R4604 T5792 T5794 themeOf RUNX1,siRNA-transfected
R4605 T5793 T5795 themeOf RUNX3,siRNA-transfected
R4606 T5794 T5804 causeOf siRNA-transfected,show any significant difference
R4607 T5794 T5807 causeOf siRNA-transfected,show any significant difference
R4608 T5794 T5810 causeOf siRNA-transfected,show any significant difference
R4609 T5794 T5813 causeOf siRNA-transfected,show any significant difference
R4610 T5794 T5801 causeOf siRNA-transfected,show any significant difference
R4611 T5795 T5805 causeOf siRNA-transfected,show any significant difference
R4612 T5795 T5808 causeOf siRNA-transfected,show any significant difference
R4613 T5795 T5811 causeOf siRNA-transfected,show any significant difference
R4614 T5795 T5814 causeOf siRNA-transfected,show any significant difference
R4615 T5795 T5802 causeOf siRNA-transfected,show any significant difference
R4616 T5800 T5803 causeOf TGF-β,show any significant difference
R4617 T5800 T5806 causeOf TGF-β,show any significant difference
R4618 T5800 T5809 causeOf TGF-β,show any significant difference
R4619 T5800 T5812 causeOf TGF-β,show any significant difference
R4620 T5800 T5815 causeOf TGF-β,show any significant difference

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T3684 17-23 Gene_expression denotes levels
T3685 17-23 Gene_expression denotes levels
T3686 17-23 Gene_expression denotes levels
T3687 17-23 Gene_expression denotes levels
T3688 17-23 Gene_expression denotes levels
T3689 111-128 Negative_regulation denotes siRNA-transfected
T3690 111-128 Negative_regulation denotes siRNA-transfected
T3691 213-244 Regulation denotes show any significant difference true
T3692 213-244 Regulation denotes show any significant difference true
T3693 213-244 Regulation denotes show any significant difference true
T3695 213-244 Regulation denotes show any significant difference true
T3696 213-244 Regulation denotes show any significant difference true
T3697 213-244 Regulation denotes show any significant difference true
T3698 213-244 Regulation denotes show any significant difference true
T3699 213-244 Regulation denotes show any significant difference true
T3700 213-244 Regulation denotes show any significant difference true
T3701 213-244 Regulation denotes show any significant difference true
T3702 213-244 Regulation denotes show any significant difference true
T3703 213-244 Regulation denotes show any significant difference true
T3704 213-244 Regulation denotes show any significant difference true
T3706 213-244 Regulation denotes show any significant difference true
T3707 213-244 Regulation denotes show any significant difference true
T3775 27-31 Protein denotes IL-4
T3776 33-37 Protein denotes IL-5
T3777 39-44 Protein denotes IL-10
T3778 46-51 Protein denotes IL-13
T3779 57-62 Protein denotes IFN-γ
T3780 95-100 Protein denotes RUNX1
T3781 105-110 Protein denotes RUNX3
T3782 129-132 Protein denotes CD4
T3783 182-185 Protein denotes CD2
T3784 186-187 Protein denotes 3
T3786 188-190 Protein denotes 28
T3787 199-204 Protein denotes TGF-β
R2817 T3684 T3691 themeOf levels,show any significant difference
R2818 T3684 T3692 themeOf levels,show any significant difference
R2819 T3684 T3693 themeOf levels,show any significant difference
R2820 T3685 T3695 themeOf levels,show any significant difference
R2821 T3685 T3696 themeOf levels,show any significant difference
R2822 T3685 T3697 themeOf levels,show any significant difference
R2823 T3686 T3698 themeOf levels,show any significant difference
R2824 T3686 T3699 themeOf levels,show any significant difference
R2825 T3686 T3700 themeOf levels,show any significant difference
R2826 T3687 T3701 themeOf levels,show any significant difference
R2827 T3687 T3702 themeOf levels,show any significant difference
R2828 T3687 T3703 themeOf levels,show any significant difference
R2829 T3688 T3704 themeOf levels,show any significant difference
R2830 T3688 T3706 themeOf levels,show any significant difference
R2831 T3688 T3707 themeOf levels,show any significant difference
R2832 T3689 T3691 causeOf siRNA-transfected,show any significant difference
R2833 T3689 T3695 causeOf siRNA-transfected,show any significant difference
R2834 T3689 T3698 causeOf siRNA-transfected,show any significant difference
R2835 T3689 T3701 causeOf siRNA-transfected,show any significant difference
R2836 T3689 T3704 causeOf siRNA-transfected,show any significant difference
R2837 T3690 T3692 causeOf siRNA-transfected,show any significant difference
R2838 T3690 T3696 causeOf siRNA-transfected,show any significant difference
R2839 T3690 T3699 causeOf siRNA-transfected,show any significant difference
R2840 T3690 T3702 causeOf siRNA-transfected,show any significant difference
R2841 T3690 T3706 causeOf siRNA-transfected,show any significant difference
R2886 T3775 T3684 themeOf IL-4,levels
R2887 T3776 T3685 themeOf IL-5,levels
R2888 T3777 T3686 themeOf IL-10,levels
R2889 T3778 T3687 themeOf IL-13,levels
R2890 T3779 T3688 themeOf IFN-γ,levels
R2891 T3780 T3689 themeOf RUNX1,siRNA-transfected
R2892 T3781 T3690 themeOf RUNX3,siRNA-transfected
R2893 T3787 T3693 causeOf TGF-β,show any significant difference
R2894 T3787 T3697 causeOf TGF-β,show any significant difference
R2895 T3787 T3700 causeOf TGF-β,show any significant difference
R2896 T3787 T3703 causeOf TGF-β,show any significant difference
R2897 T3787 T3707 causeOf TGF-β,show any significant difference

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4519 27-31 P05112 denotes IL-4
T4520 33-37 P05113 denotes IL-5
T4521 39-44 P22301 denotes IL-10
T4522 46-51 P35225 denotes IL-13
T4523 57-62 P01579 denotes IFN-γ
T4524 95-100 Q01196 denotes RUNX1
T4525 105-110 Q13761 denotes RUNX3
T4526 129-132 P01730 denotes CD4
T4527 182-185 P06729 denotes CD2
T4528 199-204 P01137 denotes TGF-β

test2

Id Subject Object Predicate Lexical cue
T3561 27-31 Protein denotes IL-4
T3562 33-37 Protein denotes IL-5
T3563 39-44 Protein denotes IL-10
T3564 46-51 Protein denotes IL-13
T3565 57-62 Protein denotes IFN-γ
T3566 95-100 Protein denotes RUNX1
T3567 105-110 Protein denotes RUNX3
T3568 111-116 Negative_regulation denotes siRNA
T3569 129-132 Protein denotes CD4
T3570 182-185 Protein denotes CD2
T3571 186-187 Protein denotes 3
T3572 188-190 Protein denotes 28
T3573 199-204 Protein denotes TGF-β
R2768 T3566 T3568 themeOf RUNX1,siRNA