> top > docs > PMC:2800179 > spans > 563-1135 > annotations

PMC:2800179 / 563-1135 JSONTXT

Annnotations TAB JSON ListView MergeView

GO-CC

Id Subject Object Predicate Lexical cue
T600 60-64 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T601 331-335 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T602 374-379 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T603 461-466 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T605 60-72 http://purl.obolibrary.org/obo/GO_0009986 denotes cell surface

GO-BP

Id Subject Object Predicate Lexical cue
T585 302-310 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T594 14-33 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine production
T595 331-349 http://purl.obolibrary.org/obo/GO_0008283 denotes cell proliferation
T596 383-391 http://purl.obolibrary.org/obo/GO_0051318 denotes G1 phase
T597 542-562 http://purl.obolibrary.org/obo/GO_0070487 denotes monocyte aggregation
T8025 302-310 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T167 12-13 -COMMA- denotes ,
T168 14-22 NN denotes cytokine
T169 23-33 NN denotes production
T170 34-37 CC denotes and
T171 38-48 NN denotes expression
T172 49-51 IN denotes of
T173 52-59 JJ denotes various
T174 60-64 NN denotes cell
T175 65-72 NN denotes surface
T176 73-81 NN denotes antigens
T177 82-91 VB denotes including
T178 92-98 NN denotes ICAM-1
T179 99-107 NN denotes adhesion
T180 108-116 NN denotes molecule
T181 118-128 JJ denotes Peripheral
T182 129-134 NN denotes blood
T183 135-144 NN denotes monocytes
T184 145-146 -LRB- denotes (
T185 146-149 NN denotes PBM
T186 149-150 -RRB- denotes )
T187 151-154 CC denotes and
T188 155-160 NN denotes THP-1
T189 161-170 JJ denotes monocytic
T190 171-176 NN denotes cells
T191 177-181 VB denotes were
T192 182-190 VB denotes cultured
T193 191-193 IN denotes in
T194 194-197 DT denotes the
T195 198-206 NN denotes presence
T196 207-209 IN denotes of
T197 210-216 CC denotes either
T198 217-219 CD denotes 10
T199 220-222 CC denotes or
T200 223-225 CD denotes 40
T201 226-229 NN denotes kDa
T202 229-230 -COMMA- denotes ,
T203 231-235 NN denotes dCGN
T204 237-240 DT denotes The
T205 241-243 CD denotes 40
T206 244-247 NN denotes kDa
T207 247-248 -COMMA- denotes ,
T208 249-252 CC denotes but
T209 253-256 RB denotes not
T210 257-260 DT denotes the
T211 261-263 CD denotes 10
T212 264-267 NN denotes kDa
T213 268-272 NN denotes dCGN
T214 272-273 -COMMA- denotes ,
T215 274-281 VB denotes induced
T216 282-289 NN denotes colitis
T217 290-292 IN denotes in
T218 293-295 FW denotes in
T219 296-300 FW denotes vivo
T220 302-310 VB denotes Degraded
T221 311-314 NN denotes CGN
T222 315-324 VB denotes inhibited
T223 325-330 NN denotes THP-1
T224 331-335 NN denotes cell
T225 336-349 NN denotes proliferation
T226 350-352 FW denotes in
T227 353-358 FW denotes vitro
T228 358-359 -COMMA- denotes ,
T229 360-369 VB denotes arresting
T230 370-373 DT denotes the
T231 374-379 NN denotes cells
T232 380-382 IN denotes in
T233 383-385 NN denotes G1
T234 386-391 NN denotes phase
T235 393-395 IN denotes In
T236 396-404 NN denotes addition
T237 404-405 -COMMA- denotes ,
T238 406-410 NN denotes dCGN
T239 411-420 VB denotes increased
T240 421-427 NN denotes ICAM-1
T241 428-438 NN denotes expression
T242 439-441 IN denotes in
T243 442-446 CC denotes both
T244 447-450 NN denotes PBM
T245 451-454 CC denotes and
T246 455-460 NN denotes THP-1
T247 461-466 NN denotes cells
T248 467-471 IN denotes with
T249 472-473 DT denotes a
T250 474-479 JJ denotes major
T251 480-486 NN denotes effect
T252 487-491 VB denotes seen
T253 492-497 IN denotes after
T254 498-500 CD denotes 40
T255 501-504 NN denotes kDa
T256 505-509 NN denotes dCGN
T257 510-518 NN denotes exposure
T258 520-524 RB denotes Also
T259 524-525 -COMMA- denotes ,
T260 526-530 NN denotes dCGN
T261 531-541 VB denotes stimulated
T262 542-550 NN denotes monocyte
T263 551-562 NN denotes aggregation
T264 563-565 FW denotes in
T265 566-571 FW denotes vitro
T7286 302-310 VB denotes Degraded
T7287 311-314 NN denotes CGN
R107 T167 T170 arg1Of ",",and
R108 T169 T167 arg2Of production,","
R109 T169 T168 arg1Of production,cytokine
R111 T171 T170 arg2Of expression,and
R112 T171 T172 arg1Of expression,of
R113 T176 T172 arg2Of antigens,of
R114 T176 T173 arg1Of antigens,various
R115 T176 T174 arg1Of antigens,cell
R116 T176 T175 arg1Of antigens,surface
R117 T176 T177 arg1Of antigens,including
R118 T180 T177 arg2Of molecule,including
R119 T180 T178 arg1Of molecule,ICAM-1
R120 T180 T179 arg1Of molecule,adhesion
R121 T183 T181 arg1Of monocytes,Peripheral
R122 T183 T182 arg1Of monocytes,blood
R123 T183 T184 arg1Of monocytes,(
R124 T183 T187 arg1Of monocytes,and
R125 T185 T184 arg2Of PBM,(
R126 T186 T184 arg3Of ),(
R127 T187 T191 arg1Of and,were
R128 T187 T192 arg2Of and,cultured
R129 T190 T187 arg2Of cells,and
R130 T190 T188 arg1Of cells,THP-1
R131 T190 T189 arg1Of cells,monocytic
R132 T192 T191 arg2Of cultured,were
R133 T192 T193 arg1Of cultured,in
R134 T195 T193 arg2Of presence,in
R135 T195 T194 arg1Of presence,the
R136 T195 T196 arg1Of presence,of
R137 T198 T199 arg1Of 10,or
R138 T199 T197 arg1Of or,either
R139 T200 T199 arg2Of 40,or
R140 T201 T196 arg2Of kDa,of
R141 T201 T198 arg1Of kDa,10
R142 T201 T200 arg1Of kDa,40
R143 T201 T202 arg1Of kDa,","
R144 T203 T202 arg2Of dCGN,","
R145 T206 T204 arg1Of kDa,The
R146 T206 T205 arg1Of kDa,40
R147 T206 T208 arg1Of kDa,but
R148 T208 T207 arg1Of but,","
R149 T208 T209 arg1Of but,not
R150 T208 T215 arg1Of but,induced
R151 T213 T208 arg2Of dCGN,but
R152 T213 T210 arg1Of dCGN,the
R153 T213 T211 arg1Of dCGN,10
R154 T213 T212 arg1Of dCGN,kDa
R155 T215 T214 arg1Of induced,","
R156 T215 T219 arg1Of induced,vivo
R157 T216 T215 arg2Of colitis,induced
R158 T216 T217 arg1Of colitis,in
R159 T219 T218 arg1Of vivo,in
R160 T221 T220 arg2Of CGN,Degraded
R161 T221 T222 arg1Of CGN,inhibited
R162 T221 T229 arg1Of CGN,arresting
R163 T222 T227 arg1Of inhibited,vitro
R164 T222 T228 arg1Of inhibited,","
R165 T222 T229 modOf inhibited,arresting
R166 T225 T222 arg2Of proliferation,inhibited
R167 T225 T223 arg1Of proliferation,THP-1
R168 T225 T224 arg1Of proliferation,cell
R169 T227 T226 arg1Of vitro,in
R170 T231 T229 arg2Of cells,arresting
R171 T231 T230 arg1Of cells,the
R172 T231 T232 arg1Of cells,in
R173 T234 T232 arg2Of phase,in
R174 T234 T233 arg1Of phase,G1
R175 T236 T235 arg2Of addition,In
R176 T238 T239 arg1Of dCGN,increased
R177 T239 T235 arg1Of increased,In
R178 T239 T237 arg1Of increased,","
R179 T239 T242 arg1Of increased,in
R180 T239 T248 arg1Of increased,with
R181 T241 T239 arg2Of expression,increased
R182 T241 T240 arg1Of expression,ICAM-1
R183 T244 T245 arg1Of PBM,and
R184 T245 T242 arg2Of and,in
R185 T245 T243 arg1Of and,both
R186 T247 T245 arg2Of cells,and
R187 T247 T246 arg1Of cells,THP-1
R188 T251 T248 arg2Of effect,with
R189 T251 T249 arg1Of effect,a
R190 T251 T250 arg1Of effect,major
R191 T251 T252 arg2Of effect,seen
R192 T252 T253 arg1Of seen,after
R193 T257 T253 arg2Of exposure,after
R194 T257 T254 arg1Of exposure,40
R195 T257 T255 arg1Of exposure,kDa
R196 T257 T256 arg1Of exposure,dCGN
R197 T260 T261 arg1Of dCGN,stimulated
R198 T261 T258 arg1Of stimulated,Also
R199 T261 T259 arg1Of stimulated,","
R200 T263 T261 arg2Of aggregation,stimulated
R201 T263 T262 arg1Of aggregation,monocyte
R202 T263 T265 arg1Of aggregation,vitro
R206 T265 T264 arg1Of vitro,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T411 12-13 , denotes ,
T412 14-22 NN denotes cytokine
T413 23-33 NN denotes production
T414 34-37 CC denotes and
T415 38-48 NN denotes expression
T416 49-51 IN denotes of
T417 52-59 JJ denotes various
T418 60-64 NN denotes cell
T419 65-72 NN denotes surface
T420 73-81 NNS denotes antigens
T421 82-91 VBG denotes including
T422 92-98 JJ denotes ICAM-1
T423 99-107 NN denotes adhesion
T424 108-116 NN denotes molecule
T425 116-117 . denotes .
T426 118-128 JJ denotes Peripheral
T427 129-134 NN denotes blood
T428 135-144 NNS denotes monocytes
T429 145-146 -LRB- denotes (
T430 146-149 NNP denotes PBM
T431 149-150 -RRB- denotes )
T432 151-154 CC denotes and
T433 155-160 CD denotes THP-1
T434 161-170 JJ denotes monocytic
T435 171-176 NNS denotes cells
T436 177-181 VBD denotes were
T437 182-190 VBN denotes cultured
T438 191-193 IN denotes in
T439 194-197 DT denotes the
T440 198-206 NN denotes presence
T441 207-209 IN denotes of
T442 210-216 DT denotes either
T443 217-219 CD denotes 10
T444 220-222 CC denotes or
T445 223-225 CD denotes 40
T446 226-229 NNP denotes kDa
T447 229-230 , denotes ,
T448 231-235 NNP denotes dCGN
T449 235-236 . denotes .
T450 237-240 DT denotes The
T451 241-243 CD denotes 40
T452 244-247 NNP denotes kDa
T453 247-248 , denotes ,
T454 249-252 CC denotes but
T455 253-256 RB denotes not
T456 257-260 DT denotes the
T457 261-263 CD denotes 10
T458 264-267 NNP denotes kDa
T459 268-272 NNP denotes dCGN
T460 272-273 , denotes ,
T461 274-281 VBD denotes induced
T462 282-289 NN denotes colitis
T463 290-292 IN denotes in
T464 293-295 IN denotes in
T465 296-300 NN denotes vivo
T466 300-301 . denotes .
T467 302-310 JJ denotes Degraded
T468 311-314 NNP denotes CGN
T469 315-324 VBD denotes inhibited
T470 325-330 CD denotes THP-1
T471 331-335 NN denotes cell
T472 336-349 NN denotes proliferation
T473 350-352 IN denotes in
T474 353-358 NN denotes vitro
T475 358-359 , denotes ,
T476 360-369 VBG denotes arresting
T477 370-373 DT denotes the
T478 374-379 NNS denotes cells
T479 380-382 IN denotes in
T480 383-385 CD denotes G1
T481 386-391 NN denotes phase
T482 391-392 . denotes .
T483 393-395 IN denotes In
T484 396-404 NN denotes addition
T485 404-405 , denotes ,
T486 406-410 NNP denotes dCGN
T487 411-420 VBD denotes increased
T488 421-427 NNP denotes ICAM-1
T489 428-438 NN denotes expression
T490 439-441 IN denotes in
T491 442-446 DT denotes both
T492 447-450 NNP denotes PBM
T493 451-454 CC denotes and
T494 455-460 NNP denotes THP-1
T495 461-466 NNS denotes cells
T496 467-471 IN denotes with
T497 472-473 DT denotes a
T498 474-479 JJ denotes major
T499 480-486 NN denotes effect
T500 487-491 VBN denotes seen
T501 492-497 IN denotes after
T502 498-500 CD denotes 40
T503 501-504 NNP denotes kDa
T504 505-509 NNP denotes dCGN
T505 510-518 NN denotes exposure
T506 518-519 . denotes .
T507 520-524 RB denotes Also
T508 524-525 , denotes ,
T509 526-530 NNP denotes dCGN
T510 531-541 VBD denotes stimulated
T511 542-550 NN denotes monocyte
T512 551-562 NN denotes aggregation
T513 563-565 IN denotes in
T514 566-571 NN denotes vitro
T7657 302-310 JJ denotes Degraded
T7658 311-314 NNP denotes CGN
R341 T412 T413 amod cytokine,production
R343 T414 T413 cc and,production
R344 T415 T413 conj expression,production
R345 T416 T413 prep of,production
R346 T417 T420 amod various,antigens
R347 T418 T419 compound cell,surface
R348 T419 T420 compound surface,antigens
R349 T420 T416 pobj antigens,of
R350 T421 T420 prep including,antigens
R351 T422 T424 amod ICAM-1,molecule
R352 T423 T424 compound adhesion,molecule
R353 T424 T421 pobj molecule,including
R355 T426 T428 amod Peripheral,monocytes
R356 T427 T428 compound blood,monocytes
R357 T428 T437 nsubjpass monocytes,cultured
R358 T429 T428 punct (,monocytes
R359 T430 T428 appos PBM,monocytes
R360 T431 T430 punct ),PBM
R361 T432 T428 cc and,monocytes
R362 T433 T435 nummod THP-1,cells
R363 T434 T435 amod monocytic,cells
R364 T435 T428 conj cells,monocytes
R365 T436 T437 auxpass were,cultured
R366 T437 T437 ROOT cultured,cultured
R367 T438 T437 prep in,cultured
R368 T439 T440 det the,presence
R369 T440 T438 pobj presence,in
R370 T441 T440 prep of,presence
R371 T442 T443 det either,10
R372 T443 T446 nummod 10,kDa
R373 T444 T443 cc or,10
R374 T445 T443 conj 40,10
R375 T446 T441 pobj kDa,of
R376 T447 T446 punct ",",kDa
R377 T448 T446 appos dCGN,kDa
R378 T449 T437 punct .,cultured
R379 T450 T452 det The,kDa
R380 T451 T452 nummod 40,kDa
R381 T452 T461 nsubj kDa,induced
R382 T453 T452 punct ",",kDa
R383 T454 T452 cc but,kDa
R384 T455 T459 neg not,dCGN
R385 T456 T459 det the,dCGN
R386 T457 T459 nummod 10,dCGN
R387 T458 T459 compound kDa,dCGN
R388 T459 T452 conj dCGN,kDa
R389 T460 T461 punct ",",induced
R390 T461 T461 ROOT induced,induced
R391 T462 T461 dobj colitis,induced
R392 T463 T461 prt in,induced
R393 T464 T461 prep in,induced
R394 T465 T464 pobj vivo,in
R395 T466 T461 punct .,induced
R396 T467 T468 amod Degraded,CGN
R397 T468 T469 nsubj CGN,inhibited
R398 T469 T469 ROOT inhibited,inhibited
R399 T470 T472 nummod THP-1,proliferation
R400 T471 T472 compound cell,proliferation
R401 T472 T469 dobj proliferation,inhibited
R402 T473 T469 prep in,inhibited
R403 T474 T473 pobj vitro,in
R404 T475 T469 punct ",",inhibited
R405 T476 T469 advcl arresting,inhibited
R406 T477 T478 det the,cells
R407 T478 T476 dobj cells,arresting
R408 T479 T476 prep in,arresting
R409 T480 T481 nummod G1,phase
R410 T481 T479 pobj phase,in
R411 T482 T469 punct .,inhibited
R412 T483 T487 prep In,increased
R413 T484 T483 pobj addition,In
R414 T485 T487 punct ",",increased
R415 T486 T487 nsubj dCGN,increased
R416 T487 T487 ROOT increased,increased
R417 T488 T489 compound ICAM-1,expression
R418 T489 T487 dobj expression,increased
R419 T490 T487 prep in,increased
R420 T491 T492 preconj both,PBM
R421 T492 T490 pobj PBM,in
R422 T493 T492 cc and,PBM
R423 T494 T492 conj THP-1,PBM
R424 T495 T487 conj cells,increased
R425 T496 T495 prep with,cells
R426 T497 T499 det a,effect
R427 T498 T499 amod major,effect
R428 T499 T496 pobj effect,with
R429 T500 T499 acl seen,effect
R430 T501 T500 prep after,seen
R431 T502 T505 nummod 40,exposure
R432 T503 T504 compound kDa,dCGN
R433 T504 T505 compound dCGN,exposure
R434 T505 T501 pobj exposure,after
R435 T506 T487 punct .,increased
R436 T507 T510 advmod Also,stimulated
R437 T508 T510 punct ",",stimulated
R438 T509 T510 nsubj dCGN,stimulated
R439 T510 T510 ROOT stimulated,stimulated
R440 T511 T512 compound monocyte,aggregation
R441 T512 T510 dobj aggregation,stimulated
R442 T513 T510 prep in,stimulated
R443 T514 T513 pobj vitro,in

UBERON-AE

Id Subject Object Predicate Lexical cue
T52 129-134 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

sentences

Id Subject Object Predicate Lexical cue
T76 118-236 Sentence denotes Peripheral blood monocytes (PBM) and THP-1 monocytic cells were cultured in the presence of either 10 or 40 kDa, dCGN.
T77 237-301 Sentence denotes The 40 kDa, but not the 10 kDa dCGN, induced colitis in in vivo.
T78 302-392 Sentence denotes Degraded CGN inhibited THP-1 cell proliferation in vitro, arresting the cells in G1 phase.
T79 393-519 Sentence denotes In addition, dCGN increased ICAM-1 expression in both PBM and THP-1 cells with a major effect seen after 40 kDa dCGN exposure.
T7 118-236 Sentence denotes Peripheral blood monocytes (PBM) and THP-1 monocytic cells were cultured in the presence of either 10 or 40 kDa, dCGN.
T8 237-301 Sentence denotes The 40 kDa, but not the 10 kDa dCGN, induced colitis in in vivo.
T9 302-392 Sentence denotes Degraded CGN inhibited THP-1 cell proliferation in vitro, arresting the cells in G1 phase.
T10 393-519 Sentence denotes In addition, dCGN increased ICAM-1 expression in both PBM and THP-1 cells with a major effect seen after 40 kDa dCGN exposure.

events-check-again

Id Subject Object Predicate Lexical cue
T652 92-98 Protein denotes ICAM-1
T653 99-116 Protein denotes adhesion molecule
T654 411-420 Positive_regulation denotes increased
T655 421-427 Protein denotes ICAM-1
T656 428-438 Gene_expression denotes expression
R530 T655 T656 themeOf ICAM-1,expression
R531 T656 T654 themeOf expression,increased

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T669 92-116 Protein denotes ICAM-1 adhesion molecule
T671 428-438 Gene_expression denotes expression
T672 411-420 Positive_regulation denotes increased
T673 526-530 Protein denotes dCGN
T8186 302-310 Protein_catabolism denotes Degraded
T670 421-427 Protein denotes ICAM-1
R543 T671 T672 themeOf expression,increased
R555 T670 T671 themeOf ICAM-1,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T61 92-98 Protein denotes ICAM-1
T62 99-116 Protein denotes adhesion molecule
T63 411-420 Positive_regulation denotes increased
T64 421-427 Protein denotes ICAM-1
T65 428-438 Gene_expression denotes expression
R22 T64 T65 themeOf ICAM-1,expression
R23 T65 T63 themeOf expression,increased

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T321 92-98 P05362 denotes ICAM-1
T322 421-427 P05362 denotes ICAM-1

test2

Id Subject Object Predicate Lexical cue
T41 92-98 Protein denotes ICAM-1
T42 99-116 Protein denotes adhesion molecule
T43 411-420 Positive_regulation denotes increased
T44 421-427 Protein denotes ICAM-1
T45 428-438 Gene_expression denotes expression
R17 T44 T45 themeOf ICAM-1,expression
R18 T45 T43 themeOf expression,increased