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PMC:2800179 / 27943-29488 JSONTXT

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GO-CC

Id Subject Object Predicate Lexical cue
T18163 108-113 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18164 305-310 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18165 619-624 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18166 1173-1178 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18167 1278-1283 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18168 1468-1476 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T18169 1468-1476 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

GO-MF

Id Subject Object Predicate Lexical cue
T18161 972-975 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK
T18162 1468-1476 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-BP

Id Subject Object Predicate Lexical cue
T18155 44-52 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T18156 555-563 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T18157 1089-1097 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T18158 592-611 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T18159 1125-1144 http://purl.obolibrary.org/obo/GO_0051092 denotes activation of NF-κB
T18160 972-975 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T17542 44-52 VB denotes Degraded
T17543 53-56 NN denotes CGN
T17544 57-66 VB denotes activated
T17545 67-70 DT denotes the
T17546 71-76 NN denotes NF-kB
T17547 77-84 NN denotes pathway
T17548 85-87 IN denotes in
T17549 88-97 NN denotes monocytes
T17550 99-100 DT denotes A
T17551 100-101 -COLON- denotes :
T17552 102-107 NN denotes THP-1
T17553 108-113 NN denotes cells
T17554 114-118 VB denotes were
T17555 119-130 VB denotes transfected
T17556 131-135 IN denotes with
T17557 136-137 DT denotes a
T17558 138-143 NN denotes NF-κB
T17559 144-152 NN denotes reporter
T17560 153-160 NN denotes plasmid
T17561 161-168 VB denotes driving
T17562 169-179 NN denotes expression
T17563 180-182 IN denotes of
T17564 183-193 NN denotes luciferase
T17565 195-200 NN denotes Cells
T17566 201-205 VB denotes were
T17567 206-210 RB denotes then
T17568 211-218 VB denotes treated
T17569 219-223 IN denotes with
T17570 224-231 JJ denotes various
T17571 232-246 NN denotes concentrations
T17572 247-249 IN denotes of
T17573 250-252 CD denotes 10
T17574 253-256 NN denotes kDa
T17575 257-258 -LRB- denotes (
T17576 258-267 NN denotes triangles
T17577 267-268 -RRB- denotes )
T17578 268-269 -COMMA- denotes ,
T17579 270-272 CC denotes or
T17580 273-275 CD denotes 40
T17581 276-279 NN denotes kDa
T17582 280-284 NN denotes dCGN
T17583 285-286 -LRB- denotes (
T17584 286-293 NN denotes squares
T17585 293-294 -RRB- denotes )
T17586 296-297 NN denotes B
T17587 297-298 -COLON- denotes :
T17588 299-304 NN denotes THP-1
T17589 305-310 NN denotes cells
T17590 311-318 VB denotes treated
T17591 319-323 IN denotes with
T17592 324-325 CD denotes 1
T17593 326-331 NN denotes mg/ml
T17594 332-334 IN denotes of
T17595 335-337 CD denotes 10
T17596 338-341 NN denotes kDa
T17597 342-346 NN denotes dCGN
T17598 347-348 -LRB- denotes (
T17599 348-351 NN denotes C10
T17600 351-352 -RRB- denotes )
T17601 352-353 -COMMA- denotes ,
T17602 354-356 CC denotes or
T17603 357-361 IN denotes with
T17604 362-363 CD denotes 1
T17605 364-369 NN denotes mg/ml
T17606 370-372 IN denotes of
T17607 373-375 CD denotes 40
T17608 376-379 NN denotes kDa
T17609 380-384 NN denotes dCGN
T17610 385-386 -LRB- denotes (
T17611 386-389 NN denotes C40
T17612 389-390 -RRB- denotes )
T17613 391-395 VB denotes were
T17614 396-401 VB denotes lysed
T17615 402-407 IN denotes after
T17616 408-415 JJ denotes various
T17617 416-423 NN denotes periods
T17618 424-426 IN denotes of
T17619 427-431 NN denotes time
T17620 433-441 NN denotes Proteins
T17621 442-444 IN denotes in
T17622 445-449 NN denotes cell
T17623 450-458 NN denotes extracts
T17624 459-463 VB denotes were
T17625 464-472 VB denotes resolved
T17626 473-475 IN denotes by
T17627 476-484 NN denotes SDS-PAGE
T17628 485-488 CC denotes and
T17629 489-493 RB denotes then
T17630 494-501 JJ denotes Western
T17631 502-509 VB denotes blotted
T17632 510-513 IN denotes for
T17633 514-518 NN denotes IκBα
T17634 519-521 CC denotes or
T17635 522-531 NN denotes α−tubulin
T17636 532-534 IN denotes as
T17637 535-542 VB denotes loading
T17638 543-550 NN denotes control
T17639 552-553 NN denotes C
T17640 553-554 -COLON- denotes :
T17641 555-563 VB denotes Degraded
T17642 564-576 NN denotes carrageenans
T17643 577-578 -LRB- denotes (
T17644 578-582 NN denotes dCGN
T17645 582-583 -RRB- denotes )
T17646 584-591 VB denotes induced
T17647 592-602 NN denotes activation
T17648 603-605 IN denotes of
T17649 606-611 NN denotes NF-κB
T17650 613-618 NN denotes THP-1
T17651 619-624 NN denotes cells
T17652 625-629 VB denotes were
T17653 630-637 VB denotes treated
T17654 638-642 IN denotes with
T17655 643-650 NN denotes nothing
T17656 651-652 -LRB- denotes (
T17657 652-659 NN denotes control
T17658 659-660 -RRB- denotes )
T17659 660-661 -COMMA- denotes ,
T17660 662-664 CC denotes or
T17661 665-669 IN denotes with
T17662 670-671 CD denotes 1
T17663 672-677 NN denotes mg/ml
T17664 678-680 IN denotes of
T17665 681-683 CD denotes 10
T17666 684-687 NN denotes kDa
T17667 688-692 NN denotes dCGN
T17668 693-694 -LRB- denotes (
T17669 694-697 NN denotes C10
T17670 697-698 -RRB- denotes )
T17671 698-699 -COMMA- denotes ,
T17672 700-702 CC denotes or
T17673 703-707 IN denotes with
T17674 708-709 CD denotes 1
T17675 710-715 NN denotes mg/ml
T17676 716-718 IN denotes of
T17677 719-721 CD denotes 40
T17678 722-725 NN denotes kDa
T17679 726-730 NN denotes dCGN
T17680 731-732 -LRB- denotes (
T17681 732-735 NN denotes C40
T17682 735-736 -RRB- denotes )
T17683 737-740 IN denotes for
T17684 741-743 CD denotes 30
T17685 744-751 NN denotes minutes
T17686 752-754 IN denotes at
T17687 755-760 NNP denotes 37°C.
T17688 761-767 NNP denotes Nuclei
T17689 768-772 VB denotes were
T17690 773-781 VB denotes isolated
T17691 782-785 CC denotes and
T17692 786-791 VB denotes lysed
T17693 793-801 NN denotes Proteins
T17694 802-804 IN denotes in
T17695 805-812 JJ denotes nuclear
T17696 813-821 NN denotes extracts
T17697 822-826 VB denotes were
T17698 827-835 VB denotes resolved
T17699 836-838 IN denotes by
T17700 839-847 NN denotes SDS-PAGE
T17701 848-851 CC denotes and
T17702 852-856 RB denotes then
T17703 857-864 JJ denotes Western
T17704 865-872 VB denotes blotted
T17705 873-876 IN denotes for
T17706 877-882 NN denotes NF-κB
T17707 883-886 NN denotes p50
T17708 887-894 NN denotes subunit
T17709 895-896 -LRB- denotes (
T17710 896-899 NN denotes p50
T17711 899-900 -RRB- denotes )
T17712 901-903 CC denotes or
T17713 904-909 NN denotes NF-κB
T17714 910-913 NN denotes p65
T17715 914-921 NN denotes subunit
T17716 922-923 -LRB- denotes (
T17717 923-926 NN denotes p65
T17718 926-927 -RRB- denotes )
T17719 929-934 JJ denotes Lower
T17720 935-941 NN denotes panels
T17721 942-946 VB denotes show
T17722 947-954 JJ denotes Western
T17723 955-960 NN denotes blots
T17724 961-963 IN denotes of
T17725 964-971 JJ denotes nuclear
T17726 972-975 NN denotes ERK
T17727 976-985 VB denotes revealing
T17728 986-996 JJ denotes equivalent
T17729 997-1003 NN denotes amount
T17730 1004-1006 IN denotes of
T17731 1007-1014 NN denotes protein
T17732 1015-1017 IN denotes in
T17733 1018-1022 DT denotes each
T17734 1023-1029 NN denotes sample
T17735 1031-1035 NN denotes Data
T17736 1036-1039 VB denotes are
T17737 1040-1054 JJ denotes representative
T17738 1055-1057 IN denotes of
T17739 1058-1063 CD denotes three
T17740 1064-1072 JJ denotes separate
T17741 1073-1084 NN denotes experiments
T17742 1086-1087 NN denotes D
T17743 1087-1088 -COLON- denotes :
T17744 1089-1097 VB denotes Degraded
T17745 1098-1109 NN denotes carrageenan
T17746 1110-1111 -LRB- denotes (
T17747 1111-1115 NN denotes dCGN
T17748 1115-1116 -RRB- denotes )
T17749 1117-1124 VB denotes induced
T17750 1125-1135 NN denotes activation
T17751 1136-1138 IN denotes of
T17752 1139-1144 NN denotes NF-κB
T17753 1146-1152 NN denotes Nuclei
T17754 1153-1161 VB denotes isolated
T17755 1162-1166 IN denotes from
T17756 1167-1172 NN denotes THP-1
T17757 1173-1178 NN denotes cells
T17758 1179-1183 VB denotes were
T17759 1184-1204 JJ denotes fluorescence-stained
T17760 1205-1208 IN denotes for
T17761 1209-1214 NN denotes NF-κB
T17762 1215-1218 NN denotes p50
T17763 1219-1226 NN denotes subunit
T17764 1227-1229 CC denotes or
T17765 1230-1235 NN denotes NF-κB
T17766 1236-1239 NN denotes p65
T17767 1240-1247 NN denotes subunit
T17768 1248-1254 IN denotes before
T17769 1255-1256 -LRB- denotes (
T17770 1256-1262 VB denotes filled
T17771 1263-1267 NN denotes area
T17772 1267-1268 -RRB- denotes )
T17773 1269-1271 CC denotes or
T17774 1272-1277 IN denotes after
T17775 1278-1283 NN denotes cells
T17776 1284-1288 VB denotes were
T17777 1289-1296 VB denotes treated
T17778 1297-1301 IN denotes with
T17779 1302-1303 CD denotes 1
T17780 1304-1309 NN denotes mg/ml
T17781 1310-1312 IN denotes of
T17782 1313-1315 CD denotes 10
T17783 1316-1319 NN denotes kDa
T17784 1320-1324 NN denotes dCGN
T17785 1325-1326 -LRB- denotes (
T17786 1326-1329 NN denotes C10
T17787 1329-1330 -RRB- denotes )
T17788 1330-1331 -COMMA- denotes ,
T17789 1332-1334 CC denotes or
T17790 1335-1339 IN denotes with
T17791 1340-1341 CD denotes 1
T17792 1342-1347 NN denotes mg/ml
T17793 1348-1350 IN denotes of
T17794 1351-1353 CD denotes 40
T17795 1354-1357 NN denotes kDa
T17796 1358-1362 NN denotes dCGN
T17797 1363-1364 -LRB- denotes (
T17798 1364-1367 NN denotes C40
T17799 1367-1368 -RRB- denotes )
T17800 1369-1372 IN denotes for
T17801 1373-1375 CD denotes 30
T17802 1376-1383 NN denotes minutes
T17803 1384-1386 IN denotes at
T17804 1387-1392 NNP denotes 37°C.
T17805 1393-1399 NNP denotes Dashed
T17806 1400-1404 NN denotes line
T17807 1405-1416 VB denotes corresponds
T17808 1417-1419 TO denotes to
T17809 1420-1426 NN denotes nuclei
T17810 1427-1434 VB denotes stained
T17811 1435-1439 RB denotes only
T17812 1440-1444 IN denotes with
T17813 1445-1454 JJ denotes secondary
T17814 1455-1467 NN denotes fluorescence
T17815 1468-1476 NN denotes antibody
T17816 1478-1490 NN denotes Fluorescence
T17817 1491-1500 NN denotes intensity
T17818 1501-1504 VB denotes was
T17819 1505-1513 VB denotes analyzed
T17820 1514-1516 IN denotes by
T17821 1517-1521 NN denotes flow
T17822 1522-1531 NN denotes cytometry
T17823 1532-1534 IN denotes as
T17824 1535-1544 VB denotes described
R14952 T17543 T17542 arg2Of CGN,Degraded
R14953 T17543 T17544 arg1Of CGN,activated
R14954 T17547 T17544 arg2Of pathway,activated
R14955 T17547 T17545 arg1Of pathway,the
R14956 T17547 T17546 arg1Of pathway,NF-kB
R14957 T17547 T17548 arg1Of pathway,in
R14958 T17549 T17548 arg2Of monocytes,in
R14959 T17553 T17552 arg1Of cells,THP-1
R14960 T17553 T17554 arg1Of cells,were
R14961 T17553 T17555 arg2Of cells,transfected
R14962 T17555 T17554 arg2Of transfected,were
R14963 T17555 T17556 arg1Of transfected,with
R14964 T17560 T17556 arg2Of plasmid,with
R14965 T17560 T17557 arg1Of plasmid,a
R14966 T17560 T17558 arg1Of plasmid,NF-κB
R14967 T17560 T17559 arg1Of plasmid,reporter
R14968 T17561 T17551 arg1Of driving,:
R14969 T17561 T17554 modOf driving,were
R14970 T17562 T17550 arg1Of expression,A
R14971 T17562 T17561 arg1Of expression,driving
R14972 T17562 T17563 arg1Of expression,of
R14973 T17564 T17563 arg2Of luciferase,of
R14974 T17565 T17566 arg1Of Cells,were
R14975 T17565 T17568 arg2Of Cells,treated
R14976 T17568 T17566 arg2Of treated,were
R14977 T17568 T17567 arg1Of treated,then
R14978 T17568 T17569 arg1Of treated,with
R14979 T17571 T17569 arg2Of concentrations,with
R14980 T17571 T17570 arg1Of concentrations,various
R14981 T17571 T17572 arg1Of concentrations,of
R14982 T17574 T17573 arg1Of kDa,10
R14983 T17574 T17575 arg1Of kDa,(
R14984 T17574 T17579 arg1Of kDa,or
R14985 T17576 T17575 arg2Of triangles,(
R14986 T17577 T17575 arg3Of ),(
R14987 T17579 T17572 arg2Of or,of
R14988 T17579 T17578 arg1Of or,","
R14989 T17582 T17579 arg2Of dCGN,or
R14990 T17582 T17580 arg1Of dCGN,40
R14991 T17582 T17581 arg1Of dCGN,kDa
R14992 T17582 T17583 arg1Of dCGN,(
R14993 T17584 T17583 arg2Of squares,(
R14994 T17585 T17583 arg3Of ),(
R14995 T17586 T17587 arg1Of B,:
R14996 T17589 T17588 arg1Of cells,THP-1
R14997 T17589 T17590 arg2Of cells,treated
R14998 T17589 T17613 arg1Of cells,were
R14999 T17589 T17614 arg2Of cells,lysed
R15000 T17590 T17591 arg1Of treated,with
R15001 T17590 T17603 arg1Of treated,with
R15002 T17591 T17602 arg1Of with,or
R15003 T17593 T17591 arg2Of mg/ml,with
R15004 T17593 T17592 arg1Of mg/ml,1
R15005 T17593 T17594 arg1Of mg/ml,of
R15006 T17597 T17594 arg2Of dCGN,of
R15007 T17597 T17595 arg1Of dCGN,10
R15008 T17597 T17596 arg1Of dCGN,kDa
R15009 T17597 T17598 arg1Of dCGN,(
R15010 T17599 T17598 arg2Of C10,(
R15011 T17600 T17598 arg3Of ),(
R15012 T17602 T17601 arg1Of or,","
R15013 T17603 T17602 arg2Of with,or
R15014 T17605 T17603 arg2Of mg/ml,with
R15015 T17605 T17604 arg1Of mg/ml,1
R15016 T17605 T17606 arg1Of mg/ml,of
R15017 T17609 T17606 arg2Of dCGN,of
R15018 T17609 T17607 arg1Of dCGN,40
R15019 T17609 T17608 arg1Of dCGN,kDa
R15020 T17609 T17610 arg1Of dCGN,(
R15021 T17611 T17610 arg2Of C40,(
R15022 T17612 T17610 arg3Of ),(
R15023 T17614 T17587 arg2Of lysed,:
R15024 T17614 T17613 arg2Of lysed,were
R15025 T17614 T17615 arg1Of lysed,after
R15026 T17617 T17615 arg2Of periods,after
R15027 T17617 T17616 arg1Of periods,various
R15028 T17617 T17618 arg1Of periods,of
R15029 T17619 T17618 arg2Of time,of
R15030 T17620 T17621 arg1Of Proteins,in
R15031 T17620 T17624 arg1Of Proteins,were
R15032 T17620 T17625 arg2Of Proteins,resolved
R15033 T17623 T17621 arg2Of extracts,in
R15034 T17623 T17622 arg1Of extracts,cell
R15035 T17625 T17624 arg2Of resolved,were
R15036 T17625 T17626 arg1Of resolved,by
R15037 T17625 T17632 arg1Of resolved,for
R15038 T17627 T17628 arg1Of SDS-PAGE,and
R15039 T17628 T17626 arg2Of and,by
R15040 T17630 T17629 arg1Of Western,then
R15041 T17631 T17628 arg2Of blotted,and
R15042 T17631 T17630 arg1Of blotted,Western
R15043 T17633 T17634 arg1Of IκBα,or
R15044 T17634 T17632 arg2Of or,for
R15045 T17634 T17636 arg1Of or,as
R15046 T17635 T17634 arg2Of α−tubulin,or
R15047 T17637 T17636 arg2Of loading,as
R15048 T17638 T17637 arg2Of control,loading
R15049 T17639 T17640 arg1Of C,:
R15050 T17642 T17641 arg2Of carrageenans,Degraded
R15051 T17642 T17643 arg1Of carrageenans,(
R15052 T17642 T17646 arg1Of carrageenans,induced
R15053 T17644 T17643 arg2Of dCGN,(
R15054 T17645 T17643 arg3Of ),(
R15055 T17647 T17646 arg2Of activation,induced
R15056 T17647 T17648 arg1Of activation,of
R15057 T17649 T17648 arg2Of NF-κB,of
R15058 T17651 T17650 arg1Of cells,THP-1
R15059 T17651 T17652 arg1Of cells,were
R15060 T17651 T17653 arg2Of cells,treated
R15061 T17653 T17652 arg2Of treated,were
R15062 T17653 T17654 arg1Of treated,with
R15063 T17653 T17661 arg1Of treated,with
R15064 T17653 T17673 arg1Of treated,with
R15065 T17654 T17660 arg1Of with,or
R15066 T17655 T17654 arg2Of nothing,with
R15067 T17655 T17656 arg1Of nothing,(
R15068 T17657 T17656 arg2Of control,(
R15069 T17658 T17656 arg3Of ),(
R15070 T17660 T17659 arg1Of or,","
R15071 T17660 T17672 arg1Of or,or
R15072 T17661 T17660 arg2Of with,or
R15073 T17663 T17661 arg2Of mg/ml,with
R15074 T17663 T17662 arg1Of mg/ml,1
R15075 T17663 T17664 arg1Of mg/ml,of
R15076 T17667 T17664 arg2Of dCGN,of
R15077 T17667 T17665 arg1Of dCGN,10
R15078 T17667 T17666 arg1Of dCGN,kDa
R15079 T17667 T17668 arg1Of dCGN,(
R15080 T17669 T17668 arg2Of C10,(
R15081 T17670 T17668 arg3Of ),(
R15082 T17672 T17671 arg1Of or,","
R15083 T17673 T17672 arg2Of with,or
R15084 T17675 T17673 arg2Of mg/ml,with
R15085 T17675 T17674 arg1Of mg/ml,1
R15086 T17679 T17676 arg1Of dCGN,of
R15087 T17679 T17677 arg1Of dCGN,40
R15088 T17679 T17678 arg1Of dCGN,kDa
R15089 T17679 T17680 arg1Of dCGN,(
R15090 T17679 T17683 arg1Of dCGN,for
R15091 T17679 T17686 arg1Of dCGN,at
R15092 T17679 T17689 arg1Of dCGN,were
R15093 T17679 T17690 arg2Of dCGN,isolated
R15094 T17679 T17692 arg2Of dCGN,lysed
R15095 T17681 T17680 arg2Of C40,(
R15096 T17682 T17680 arg3Of ),(
R15097 T17685 T17683 arg2Of minutes,for
R15098 T17685 T17684 arg1Of minutes,30
R15099 T17688 T17686 arg2Of Nuclei,at
R15100 T17688 T17687 arg1Of Nuclei,37°C.
R15101 T17690 T17691 arg1Of isolated,and
R15102 T17691 T17652 modOf and,were
R15103 T17691 T17689 arg2Of and,were
R15104 T17692 T17691 arg2Of lysed,and
R15105 T17693 T17694 arg1Of Proteins,in
R15106 T17693 T17697 arg1Of Proteins,were
R15107 T17693 T17698 arg2Of Proteins,resolved
R15108 T17696 T17694 arg2Of extracts,in
R15109 T17696 T17695 arg1Of extracts,nuclear
R15110 T17698 T17697 arg2Of resolved,were
R15111 T17698 T17699 arg1Of resolved,by
R15112 T17698 T17705 arg1Of resolved,for
R15113 T17700 T17701 arg1Of SDS-PAGE,and
R15114 T17701 T17699 arg2Of and,by
R15115 T17703 T17702 arg1Of Western,then
R15116 T17704 T17701 arg2Of blotted,and
R15117 T17704 T17703 arg1Of blotted,Western
R15118 T17708 T17706 arg1Of subunit,NF-κB
R15119 T17708 T17707 arg1Of subunit,p50
R15120 T17708 T17709 arg1Of subunit,(
R15121 T17708 T17712 arg1Of subunit,or
R15122 T17710 T17709 arg2Of p50,(
R15123 T17711 T17709 arg3Of ),(
R15124 T17712 T17705 arg2Of or,for
R15125 T17715 T17712 arg2Of subunit,or
R15126 T17715 T17713 arg1Of subunit,NF-κB
R15127 T17715 T17714 arg1Of subunit,p65
R15128 T17715 T17716 arg1Of subunit,(
R15129 T17717 T17716 arg2Of p65,(
R15130 T17718 T17716 arg3Of ),(
R15131 T17720 T17719 arg1Of panels,Lower
R15132 T17720 T17721 arg1Of panels,show
R15133 T17723 T17721 arg2Of blots,show
R15134 T17723 T17722 arg1Of blots,Western
R15135 T17723 T17724 arg1Of blots,of
R15136 T17726 T17724 arg2Of ERK,of
R15137 T17726 T17725 arg1Of ERK,nuclear
R15138 T17726 T17727 arg1Of ERK,revealing
R15139 T17727 T17732 arg1Of revealing,in
R15140 T17729 T17727 arg2Of amount,revealing
R15141 T17729 T17728 arg1Of amount,equivalent
R15142 T17729 T17730 arg1Of amount,of
R15143 T17731 T17730 arg2Of protein,of
R15144 T17734 T17732 arg2Of sample,in
R15145 T17734 T17733 arg1Of sample,each
R15146 T17735 T17736 arg1Of Data,are
R15147 T17735 T17737 arg1Of Data,representative
R15148 T17737 T17736 arg2Of representative,are
R15149 T17737 T17738 arg1Of representative,of
R15150 T17741 T17738 arg2Of experiments,of
R15151 T17741 T17739 arg1Of experiments,three
R15152 T17741 T17740 arg1Of experiments,separate
R15153 T17742 T17743 arg1Of D,:
R15154 T17745 T17744 arg2Of carrageenan,Degraded
R15155 T17745 T17746 arg1Of carrageenan,(
R15156 T17745 T17749 arg1Of carrageenan,induced
R15157 T17747 T17746 arg2Of dCGN,(
R15158 T17748 T17746 arg3Of ),(
R15159 T17750 T17749 arg2Of activation,induced
R15160 T17750 T17751 arg1Of activation,of
R15161 T17752 T17751 arg2Of NF-κB,of
R15162 T17753 T17754 arg2Of Nuclei,isolated
R15163 T17753 T17758 arg1Of Nuclei,were
R15164 T17753 T17759 arg1Of Nuclei,fluorescence-stained
R15165 T17754 T17755 arg1Of isolated,from
R15166 T17757 T17755 arg2Of cells,from
R15167 T17757 T17756 arg1Of cells,THP-1
R15168 T17758 T17768 arg1Of were,before
R15169 T17758 T17774 arg1Of were,after
R15170 T17759 T17758 arg2Of fluorescence-stained,were
R15171 T17759 T17760 arg1Of fluorescence-stained,for
R15172 T17763 T17761 arg1Of subunit,NF-κB
R15173 T17763 T17762 arg1Of subunit,p50
R15174 T17763 T17764 arg1Of subunit,or
R15175 T17764 T17760 arg2Of or,for
R15176 T17767 T17764 arg2Of subunit,or
R15177 T17767 T17765 arg1Of subunit,NF-κB
R15178 T17767 T17766 arg1Of subunit,p65
R15179 T17768 T17769 arg1Of before,(
R15180 T17768 T17773 arg1Of before,or
R15181 T17771 T17769 arg2Of area,(
R15182 T17771 T17770 arg2Of area,filled
R15183 T17772 T17769 arg3Of ),(
R15184 T17774 T17773 arg2Of after,or
R15185 T17775 T17776 arg1Of cells,were
R15186 T17775 T17777 arg2Of cells,treated
R15187 T17777 T17776 arg2Of treated,were
R15188 T17777 T17778 arg1Of treated,with
R15189 T17777 T17790 arg1Of treated,with
R15190 T17778 T17789 arg1Of with,or
R15191 T17780 T17778 arg2Of mg/ml,with
R15192 T17780 T17779 arg1Of mg/ml,1
R15193 T17780 T17781 arg1Of mg/ml,of
R15194 T17784 T17781 arg2Of dCGN,of
R15195 T17784 T17782 arg1Of dCGN,10
R15196 T17784 T17783 arg1Of dCGN,kDa
R15197 T17784 T17785 arg1Of dCGN,(
R15198 T17786 T17785 arg2Of C10,(
R15199 T17787 T17785 arg3Of ),(
R15200 T17789 T17788 arg1Of or,","
R15201 T17790 T17789 arg2Of with,or
R15202 T17792 T17790 arg2Of mg/ml,with
R15203 T17792 T17791 arg1Of mg/ml,1
R15204 T17796 T17793 arg1Of dCGN,of
R15205 T17796 T17794 arg1Of dCGN,40
R15206 T17796 T17795 arg1Of dCGN,kDa
R15207 T17796 T17797 arg1Of dCGN,(
R15208 T17796 T17800 arg1Of dCGN,for
R15209 T17796 T17803 arg1Of dCGN,at
R15210 T17796 T17807 arg1Of dCGN,corresponds
R15211 T17798 T17797 arg2Of C40,(
R15212 T17799 T17797 arg3Of ),(
R15213 T17802 T17800 arg2Of minutes,for
R15214 T17802 T17801 arg1Of minutes,30
R15215 T17805 T17804 arg1Of Dashed,37°C.
R15216 T17806 T17803 arg2Of line,at
R15217 T17806 T17805 arg1Of line,Dashed
R15218 T17807 T17768 arg2Of corresponds,before
R15219 T17807 T17774 arg2Of corresponds,after
R15220 T17807 T17776 modOf corresponds,were
R15221 T17807 T17808 arg1Of corresponds,to
R15222 T17809 T17808 arg2Of nuclei,to
R15223 T17809 T17810 arg2Of nuclei,stained
R15224 T17810 T17812 arg1Of stained,with
R15225 T17812 T17811 arg1Of with,only
R15226 T17815 T17812 arg2Of antibody,with
R15227 T17815 T17813 arg1Of antibody,secondary
R15228 T17815 T17814 arg1Of antibody,fluorescence
R15229 T17817 T17816 arg1Of intensity,Fluorescence
R15230 T17817 T17818 arg1Of intensity,was
R15231 T17817 T17819 arg2Of intensity,analyzed
R15232 T17819 T17818 arg2Of analyzed,was
R15233 T17819 T17823 arg1Of analyzed,as
R15234 T17822 T17819 arg1Of cytometry,analyzed
R15235 T17822 T17820 arg2Of cytometry,by
R15236 T17822 T17821 arg1Of cytometry,flow
R15237 T17824 T17823 arg2Of described,as

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T17838 44-52 JJ denotes Degraded
T17839 53-56 NNP denotes CGN
T17840 57-66 VBD denotes activated
T17841 67-70 DT denotes the
T17842 71-76 JJ denotes NF-kB
T17843 77-84 NN denotes pathway
T17844 85-87 IN denotes in
T17845 88-97 NNS denotes monocytes
T17846 97-98 . denotes .
T17847 99-100 DT denotes A
T17848 100-101 : denotes :
T17849 102-107 CD denotes THP-1
T17850 108-113 NNS denotes cells
T17851 114-118 VBD denotes were
T17852 119-130 VBN denotes transfected
T17853 131-135 IN denotes with
T17854 136-137 DT denotes a
T17855 138-143 JJ denotes NF-κB
T17856 144-152 NN denotes reporter
T17857 153-160 NN denotes plasmid
T17858 161-168 VBG denotes driving
T17859 169-179 NN denotes expression
T17860 180-182 IN denotes of
T17861 183-193 NN denotes luciferase
T17862 193-194 . denotes .
T17863 195-200 NNS denotes Cells
T17864 201-205 VBD denotes were
T17865 206-210 RB denotes then
T17866 211-218 VBN denotes treated
T17867 219-223 IN denotes with
T17868 224-231 JJ denotes various
T17869 232-246 NNS denotes concentrations
T17870 247-249 IN denotes of
T17871 250-252 CD denotes 10
T17872 253-256 NN denotes kDa
T17873 257-258 -LRB- denotes (
T17874 258-267 NNS denotes triangles
T17875 267-268 -RRB- denotes )
T17876 268-269 , denotes ,
T17877 270-272 CC denotes or
T17878 273-275 CD denotes 40
T17879 276-279 NNP denotes kDa
T17880 280-284 NNP denotes dCGN
T17881 285-286 -LRB- denotes (
T17882 286-293 NNS denotes squares
T17883 293-294 -RRB- denotes )
T17884 294-295 . denotes .
T17885 296-297 NN denotes B
T17886 297-298 : denotes :
T17887 299-304 CD denotes THP-1
T17888 305-310 NNS denotes cells
T17889 311-318 VBN denotes treated
T17890 319-323 IN denotes with
T17891 324-325 CD denotes 1
T17892 326-331 NN denotes mg/ml
T17893 332-334 IN denotes of
T17894 335-337 CD denotes 10
T17895 338-341 NNP denotes kDa
T17896 342-346 NNP denotes dCGN
T17897 347-348 -LRB- denotes (
T17898 348-351 NNP denotes C10
T17899 351-352 -RRB- denotes )
T17900 352-353 , denotes ,
T17901 354-356 CC denotes or
T17902 357-361 IN denotes with
T17903 362-363 CD denotes 1
T17904 364-369 NN denotes mg/ml
T17905 370-372 IN denotes of
T17906 373-375 CD denotes 40
T17907 376-379 NNP denotes kDa
T17908 380-384 NNP denotes dCGN
T17909 385-386 -LRB- denotes (
T17910 386-389 NNP denotes C40
T17911 389-390 -RRB- denotes )
T17912 391-395 VBD denotes were
T17913 396-401 VBN denotes lysed
T17914 402-407 IN denotes after
T17915 408-415 JJ denotes various
T17916 416-423 NNS denotes periods
T17917 424-426 IN denotes of
T17918 427-431 NN denotes time
T17919 431-432 . denotes .
T17920 433-441 NNPS denotes Proteins
T17921 442-444 IN denotes in
T17922 445-449 NN denotes cell
T17923 450-458 NNS denotes extracts
T17924 459-463 VBD denotes were
T17925 464-472 VBN denotes resolved
T17926 473-475 IN denotes by
T17927 476-484 NNP denotes SDS-PAGE
T17928 485-488 CC denotes and
T17929 489-493 RB denotes then
T17930 494-501 JJ denotes Western
T17931 502-509 VBN denotes blotted
T17932 510-513 IN denotes for
T17933 514-518 NNP denotes IκBα
T17934 519-521 CC denotes or
T17935 522-523 VB denotes α
T17936 523-524 NN denotes −
T17937 524-531 NN denotes tubulin
T17938 532-534 IN denotes as
T17939 535-542 VBG denotes loading
T17940 543-550 NN denotes control
T17941 550-551 . denotes .
T17942 552-553 NNP denotes C
T17943 553-554 : denotes :
T17944 555-563 JJ denotes Degraded
T17945 564-576 NNS denotes carrageenans
T17946 577-578 -LRB- denotes (
T17947 578-582 NNP denotes dCGN
T17948 582-583 -RRB- denotes )
T17949 584-591 VBD denotes induced
T17950 592-602 NN denotes activation
T17951 603-605 IN denotes of
T17952 606-611 NN denotes NF-κB
T17953 611-612 . denotes .
T17954 613-618 CD denotes THP-1
T17955 619-624 NNS denotes cells
T17956 625-629 VBD denotes were
T17957 630-637 VBN denotes treated
T17958 638-642 IN denotes with
T17959 643-650 NN denotes nothing
T17960 651-652 -LRB- denotes (
T17961 652-659 NN denotes control
T17962 659-660 -RRB- denotes )
T17963 660-661 , denotes ,
T17964 662-664 CC denotes or
T17965 665-669 IN denotes with
T17966 670-671 CD denotes 1
T17967 672-677 NN denotes mg/ml
T17968 678-680 IN denotes of
T17969 681-683 CD denotes 10
T17970 684-687 NNP denotes kDa
T17971 688-692 NNP denotes dCGN
T17972 693-694 -LRB- denotes (
T17973 694-697 NNP denotes C10
T17974 697-698 -RRB- denotes )
T17975 698-699 , denotes ,
T17976 700-702 CC denotes or
T17977 703-707 IN denotes with
T17978 708-709 CD denotes 1
T17979 710-715 NN denotes mg/ml
T17980 716-718 IN denotes of
T17981 719-721 CD denotes 40
T17982 722-725 NNP denotes kDa
T17983 726-730 NNP denotes dCGN
T17984 731-732 -LRB- denotes (
T17985 732-735 NNP denotes C40
T17986 735-736 -RRB- denotes )
T17987 737-740 IN denotes for
T17988 741-743 CD denotes 30
T17989 744-751 NNS denotes minutes
T17990 752-754 IN denotes at
T17991 755-757 CD denotes 37
T17992 757-758 CD denotes °
T17993 758-760 NNP denotes C.
T17994 761-767 NNP denotes Nuclei
T17995 768-772 VBD denotes were
T17996 773-781 VBN denotes isolated
T17997 782-785 CC denotes and
T17998 786-791 VBN denotes lysed
T17999 791-792 . denotes .
T18000 793-801 NNPS denotes Proteins
T18001 802-804 IN denotes in
T18002 805-812 JJ denotes nuclear
T18003 813-821 NNS denotes extracts
T18004 822-826 VBD denotes were
T18005 827-835 VBN denotes resolved
T18006 836-838 IN denotes by
T18007 839-847 NNP denotes SDS-PAGE
T18008 848-851 CC denotes and
T18009 852-856 RB denotes then
T18010 857-864 JJ denotes Western
T18011 865-872 VBN denotes blotted
T18012 873-876 IN denotes for
T18013 877-882 NNP denotes NF-κB
T18014 883-886 CD denotes p50
T18015 887-894 NN denotes subunit
T18016 895-896 -LRB- denotes (
T18017 896-899 CD denotes p50
T18018 899-900 -RRB- denotes )
T18019 901-903 CC denotes or
T18020 904-909 NNP denotes NF-κB
T18021 910-913 CD denotes p65
T18022 914-921 NN denotes subunit
T18023 922-923 -LRB- denotes (
T18024 923-926 NNS denotes p65
T18025 926-927 -RRB- denotes )
T18026 927-928 . denotes .
T18027 929-934 JJR denotes Lower
T18028 935-941 NNS denotes panels
T18029 942-946 VBP denotes show
T18030 947-954 JJ denotes Western
T18031 955-960 NNS denotes blots
T18032 961-963 IN denotes of
T18033 964-971 JJ denotes nuclear
T18034 972-975 NNP denotes ERK
T18035 976-985 VBG denotes revealing
T18036 986-996 JJ denotes equivalent
T18037 997-1003 NN denotes amount
T18038 1004-1006 IN denotes of
T18039 1007-1014 NN denotes protein
T18040 1015-1017 IN denotes in
T18041 1018-1022 DT denotes each
T18042 1023-1029 NN denotes sample
T18043 1029-1030 . denotes .
T18044 1031-1035 NNS denotes Data
T18045 1036-1039 VBP denotes are
T18046 1040-1054 NN denotes representative
T18047 1055-1057 IN denotes of
T18048 1058-1063 CD denotes three
T18049 1064-1072 JJ denotes separate
T18050 1073-1084 NNS denotes experiments
T18051 1084-1085 . denotes .
T18052 1086-1087 NNP denotes D
T18053 1087-1088 : denotes :
T18054 1089-1097 JJ denotes Degraded
T18055 1098-1109 NN denotes carrageenan
T18056 1110-1111 -LRB- denotes (
T18057 1111-1115 NNP denotes dCGN
T18058 1115-1116 -RRB- denotes )
T18059 1117-1124 VBD denotes induced
T18060 1125-1135 NN denotes activation
T18061 1136-1138 IN denotes of
T18062 1139-1144 NN denotes NF-κB
T18063 1144-1145 . denotes .
T18064 1146-1152 NNP denotes Nuclei
T18065 1153-1161 VBD denotes isolated
T18066 1162-1166 IN denotes from
T18067 1167-1172 CD denotes THP-1
T18068 1173-1178 NNS denotes cells
T18069 1179-1183 VBD denotes were
T18070 1184-1204 JJ denotes fluorescence-stained
T18071 1205-1208 IN denotes for
T18072 1209-1214 NNP denotes NF-κB
T18073 1215-1218 CD denotes p50
T18074 1219-1226 NN denotes subunit
T18075 1227-1229 CC denotes or
T18076 1230-1235 NN denotes NF-κB
T18077 1236-1239 NNS denotes p65
T18078 1240-1247 VBP denotes subunit
T18079 1248-1254 IN denotes before
T18080 1255-1256 -LRB- denotes (
T18081 1256-1262 VBN denotes filled
T18082 1263-1267 NN denotes area
T18083 1267-1268 -RRB- denotes )
T18084 1269-1271 CC denotes or
T18085 1272-1277 IN denotes after
T18086 1278-1283 NNS denotes cells
T18087 1284-1288 VBD denotes were
T18088 1289-1296 VBN denotes treated
T18089 1297-1301 IN denotes with
T18090 1302-1303 CD denotes 1
T18091 1304-1309 NN denotes mg/ml
T18092 1310-1312 IN denotes of
T18093 1313-1315 CD denotes 10
T18094 1316-1319 NNP denotes kDa
T18095 1320-1324 NNP denotes dCGN
T18096 1325-1326 -LRB- denotes (
T18097 1326-1329 NNP denotes C10
T18098 1329-1330 -RRB- denotes )
T18099 1330-1331 , denotes ,
T18100 1332-1334 CC denotes or
T18101 1335-1339 IN denotes with
T18102 1340-1341 CD denotes 1
T18103 1342-1347 NN denotes mg/ml
T18104 1348-1350 IN denotes of
T18105 1351-1353 CD denotes 40
T18106 1354-1357 NNP denotes kDa
T18107 1358-1362 NNP denotes dCGN
T18108 1363-1364 -LRB- denotes (
T18109 1364-1367 NNP denotes C40
T18110 1367-1368 -RRB- denotes )
T18111 1369-1372 IN denotes for
T18112 1373-1375 CD denotes 30
T18113 1376-1383 NNS denotes minutes
T18114 1384-1386 IN denotes at
T18115 1387-1389 CD denotes 37
T18116 1389-1390 CD denotes °
T18117 1390-1392 NNP denotes C.
T18118 1393-1399 NNP denotes Dashed
T18119 1400-1404 NN denotes line
T18120 1405-1416 VBZ denotes corresponds
T18121 1417-1419 TO denotes to
T18122 1420-1426 VB denotes nuclei
T18123 1427-1434 VBN denotes stained
T18124 1435-1439 RB denotes only
T18125 1440-1444 IN denotes with
T18126 1445-1454 JJ denotes secondary
T18127 1455-1467 NN denotes fluorescence
T18128 1468-1476 NN denotes antibody
T18129 1476-1477 . denotes .
T18130 1478-1490 NNP denotes Fluorescence
T18131 1491-1500 NN denotes intensity
T18132 1501-1504 VBD denotes was
T18133 1505-1513 VBN denotes analyzed
T18134 1514-1516 IN denotes by
T18135 1517-1521 NN denotes flow
T18136 1522-1531 NN denotes cytometry
T18137 1532-1534 IN denotes as
T18138 1535-1544 VBN denotes described
T18139 1544-1545 . denotes .
R15238 T17838 T17839 amod Degraded,CGN
R15239 T17839 T17840 nsubj CGN,activated
R15240 T17840 T17840 ROOT activated,activated
R15241 T17841 T17843 det the,pathway
R15242 T17842 T17843 amod NF-kB,pathway
R15243 T17843 T17840 dobj pathway,activated
R15244 T17844 T17843 prep in,pathway
R15245 T17845 T17844 pobj monocytes,in
R15246 T17846 T17840 punct .,activated
R15247 T17847 T17847 ROOT A,A
R15248 T17848 T17847 punct :,A
R15249 T17849 T17850 nummod THP-1,cells
R15250 T17850 T17852 nsubjpass cells,transfected
R15251 T17851 T17852 auxpass were,transfected
R15252 T17852 T17852 ROOT transfected,transfected
R15253 T17853 T17852 prep with,transfected
R15254 T17854 T17856 det a,reporter
R15255 T17855 T17856 amod NF-κB,reporter
R15256 T17856 T17858 nsubj reporter,driving
R15257 T17857 T17858 npadvmod plasmid,driving
R15258 T17858 T17859 amod driving,expression
R15259 T17859 T17853 pobj expression,with
R15260 T17860 T17859 prep of,expression
R15261 T17861 T17860 pobj luciferase,of
R15262 T17862 T17852 punct .,transfected
R15263 T17863 T17866 nsubjpass Cells,treated
R15264 T17864 T17866 auxpass were,treated
R15265 T17865 T17866 advmod then,treated
R15266 T17866 T17866 ROOT treated,treated
R15267 T17867 T17866 prep with,treated
R15268 T17868 T17869 amod various,concentrations
R15269 T17869 T17867 pobj concentrations,with
R15270 T17870 T17869 prep of,concentrations
R15271 T17871 T17872 nummod 10,kDa
R15272 T17872 T17870 pobj kDa,of
R15273 T17873 T17874 punct (,triangles
R15274 T17874 T17872 appos triangles,kDa
R15275 T17875 T17872 punct ),kDa
R15276 T17876 T17869 punct ",",concentrations
R15277 T17877 T17869 cc or,concentrations
R15278 T17878 T17880 nummod 40,dCGN
R15279 T17879 T17880 compound kDa,dCGN
R15280 T17880 T17869 conj dCGN,concentrations
R15281 T17881 T17882 punct (,squares
R15282 T17882 T17880 parataxis squares,dCGN
R15283 T17883 T17882 punct ),squares
R15284 T17884 T17866 punct .,treated
R15285 T17885 T17913 nsubjpass B,lysed
R15286 T17886 T17885 punct :,B
R15287 T17887 T17888 nummod THP-1,cells
R15288 T17888 T17885 appos cells,B
R15289 T17889 T17888 acl treated,cells
R15290 T17890 T17889 prep with,treated
R15291 T17891 T17892 nummod 1,mg/ml
R15292 T17892 T17890 pobj mg/ml,with
R15293 T17893 T17892 prep of,mg/ml
R15294 T17894 T17896 nummod 10,dCGN
R15295 T17895 T17896 compound kDa,dCGN
R15296 T17896 T17893 pobj dCGN,of
R15297 T17897 T17898 punct (,C10
R15298 T17898 T17896 appos C10,dCGN
R15299 T17899 T17898 punct ),C10
R15300 T17900 T17896 punct ",",dCGN
R15301 T17901 T17890 cc or,with
R15302 T17902 T17890 conj with,with
R15303 T17903 T17904 nummod 1,mg/ml
R15304 T17904 T17902 pobj mg/ml,with
R15305 T17905 T17904 prep of,mg/ml
R15306 T17906 T17908 nummod 40,dCGN
R15307 T17907 T17908 compound kDa,dCGN
R15308 T17908 T17905 pobj dCGN,of
R15309 T17909 T17908 punct (,dCGN
R15310 T17910 T17908 appos C40,dCGN
R15311 T17911 T17908 punct ),dCGN
R15312 T17912 T17913 auxpass were,lysed
R15313 T17913 T17913 ROOT lysed,lysed
R15314 T17914 T17913 prep after,lysed
R15315 T17915 T17916 amod various,periods
R15316 T17916 T17914 pobj periods,after
R15317 T17917 T17916 prep of,periods
R15318 T17918 T17917 pobj time,of
R15319 T17919 T17913 punct .,lysed
R15320 T17920 T17925 nsubjpass Proteins,resolved
R15321 T17921 T17920 prep in,Proteins
R15322 T17922 T17923 compound cell,extracts
R15323 T17923 T17921 pobj extracts,in
R15324 T17924 T17925 auxpass were,resolved
R15325 T17925 T17925 ROOT resolved,resolved
R15326 T17926 T17925 agent by,resolved
R15327 T17927 T17926 pobj SDS-PAGE,by
R15328 T17928 T17925 cc and,resolved
R15329 T17929 T17931 advmod then,blotted
R15330 T17930 T17931 amod Western,blotted
R15331 T17931 T17925 conj blotted,resolved
R15332 T17932 T17931 prep for,blotted
R15333 T17933 T17932 pobj IκBα,for
R15334 T17934 T17931 cc or,blotted
R15335 T17935 T17931 conj α,blotted
R15336 T17936 T17937 compound −,tubulin
R15337 T17937 T17935 dobj tubulin,α
R15338 T17938 T17937 prep as,tubulin
R15339 T17939 T17938 pcomp loading,as
R15340 T17940 T17939 dobj control,loading
R15341 T17941 T17925 punct .,resolved
R15342 T17942 T17949 nsubj C,induced
R15343 T17943 T17942 punct :,C
R15344 T17944 T17945 amod Degraded,carrageenans
R15345 T17945 T17942 appos carrageenans,C
R15346 T17946 T17945 punct (,carrageenans
R15347 T17947 T17945 appos dCGN,carrageenans
R15348 T17948 T17945 punct ),carrageenans
R15349 T17949 T17949 ROOT induced,induced
R15350 T17950 T17949 dobj activation,induced
R15351 T17951 T17950 prep of,activation
R15352 T17952 T17951 pobj NF-κB,of
R15353 T17953 T17949 punct .,induced
R15354 T17954 T17955 nummod THP-1,cells
R15355 T17955 T17957 nsubjpass cells,treated
R15356 T17956 T17957 auxpass were,treated
R15357 T17957 T17957 ROOT treated,treated
R15358 T17958 T17957 prep with,treated
R15359 T17959 T17958 pobj nothing,with
R15360 T17960 T17959 punct (,nothing
R15361 T17961 T17959 appos control,nothing
R15362 T17962 T17959 punct ),nothing
R15363 T17963 T17958 punct ",",with
R15364 T17964 T17958 cc or,with
R15365 T17965 T17958 conj with,with
R15366 T17966 T17967 nummod 1,mg/ml
R15367 T17967 T17965 pobj mg/ml,with
R15368 T17968 T17967 prep of,mg/ml
R15369 T17969 T17971 nummod 10,dCGN
R15370 T17970 T17971 compound kDa,dCGN
R15371 T17971 T17968 pobj dCGN,of
R15372 T17972 T17973 punct (,C10
R15373 T17973 T17971 appos C10,dCGN
R15374 T17974 T17971 punct ),dCGN
R15375 T17975 T17967 punct ",",mg/ml
R15376 T17976 T17965 cc or,with
R15377 T17977 T17965 conj with,with
R15378 T17978 T17979 nummod 1,mg/ml
R15379 T17979 T17977 pobj mg/ml,with
R15380 T17980 T17979 prep of,mg/ml
R15381 T17981 T17983 nummod 40,dCGN
R15382 T17982 T17983 compound kDa,dCGN
R15383 T17983 T17980 pobj dCGN,of
R15384 T17984 T17983 punct (,dCGN
R15385 T17985 T17983 appos C40,dCGN
R15386 T17986 T17983 punct ),dCGN
R15387 T17987 T17979 prep for,mg/ml
R15388 T17988 T17989 nummod 30,minutes
R15389 T17989 T17987 pobj minutes,for
R15390 T17990 T17989 prep at,minutes
R15391 T17991 T17992 nummod 37,°
R15392 T17992 T17994 nummod °,Nuclei
R15393 T17993 T17994 compound C.,Nuclei
R15394 T17994 T17990 pobj Nuclei,at
R15395 T17995 T17957 auxpass were,treated
R15396 T17996 T17995 acomp isolated,were
R15397 T17997 T17996 cc and,isolated
R15398 T17998 T17996 conj lysed,isolated
R15399 T17999 T17957 punct .,treated
R15400 T18000 T18005 nsubjpass Proteins,resolved
R15401 T18001 T18000 prep in,Proteins
R15402 T18002 T18003 amod nuclear,extracts
R15403 T18003 T18001 pobj extracts,in
R15404 T18004 T18005 auxpass were,resolved
R15405 T18005 T18005 ROOT resolved,resolved
R15406 T18006 T18005 agent by,resolved
R15407 T18007 T18006 pobj SDS-PAGE,by
R15408 T18008 T18005 cc and,resolved
R15409 T18009 T18011 advmod then,blotted
R15410 T18010 T18011 amod Western,blotted
R15411 T18011 T18005 conj blotted,resolved
R15412 T18012 T18011 prep for,blotted
R15413 T18013 T18015 nmod NF-κB,subunit
R15414 T18014 T18015 nummod p50,subunit
R15415 T18015 T18012 pobj subunit,for
R15416 T18016 T18015 punct (,subunit
R15417 T18017 T18015 appos p50,subunit
R15418 T18018 T18017 punct ),p50
R15419 T18019 T18015 cc or,subunit
R15420 T18020 T18022 nmod NF-κB,subunit
R15421 T18021 T18020 nummod p65,NF-κB
R15422 T18022 T18015 conj subunit,subunit
R15423 T18023 T18024 punct (,p65
R15424 T18024 T18022 appos p65,subunit
R15425 T18025 T18011 punct ),blotted
R15426 T18026 T18005 punct .,resolved
R15427 T18027 T18028 amod Lower,panels
R15428 T18028 T18029 nsubj panels,show
R15429 T18029 T18029 ROOT show,show
R15430 T18030 T18031 amod Western,blots
R15431 T18031 T18029 dobj blots,show
R15432 T18032 T18031 prep of,blots
R15433 T18033 T18034 amod nuclear,ERK
R15434 T18034 T18035 nsubj ERK,revealing
R15435 T18035 T18032 pcomp revealing,of
R15436 T18036 T18037 amod equivalent,amount
R15437 T18037 T18035 dobj amount,revealing
R15438 T18038 T18037 prep of,amount
R15439 T18039 T18038 pobj protein,of
R15440 T18040 T18035 prep in,revealing
R15441 T18041 T18042 det each,sample
R15442 T18042 T18040 pobj sample,in
R15443 T18043 T18029 punct .,show
R15444 T18044 T18045 nsubj Data,are
R15445 T18045 T18045 ROOT are,are
R15446 T18046 T18045 attr representative,are
R15447 T18047 T18046 prep of,representative
R15448 T18048 T18050 nummod three,experiments
R15449 T18049 T18050 amod separate,experiments
R15450 T18050 T18047 pobj experiments,of
R15451 T18051 T18045 punct .,are
R15452 T18052 T18059 nsubj D,induced
R15453 T18053 T18052 punct :,D
R15454 T18054 T18055 amod Degraded,carrageenan
R15455 T18055 T18052 appos carrageenan,D
R15456 T18056 T18057 punct (,dCGN
R15457 T18057 T18055 appos dCGN,carrageenan
R15458 T18058 T18055 punct ),carrageenan
R15459 T18059 T18059 ROOT induced,induced
R15460 T18060 T18059 dobj activation,induced
R15461 T18061 T18060 prep of,activation
R15462 T18062 T18061 pobj NF-κB,of
R15463 T18063 T18059 punct .,induced
R15466 T18066 T18065 prep from,isolated
R15467 T18067 T18068 nummod THP-1,cells
R15468 T18068 T18066 pobj cells,from
R15469 T18069 T18065 conj were,isolated
R15470 T18070 T18069 acomp fluorescence-stained,were
R15471 T18071 T18070 prep for,fluorescence-stained
R15472 T18072 T18074 nmod NF-κB,subunit
R15473 T18073 T18074 nummod p50,subunit
R15474 T18074 T18071 pobj subunit,for
R15475 T18075 T18074 cc or,subunit
R15476 T18076 T18077 compound NF-κB,p65
R15477 T18077 T18078 compound p65,subunit
R15478 T18078 T18074 conj subunit,subunit
R15479 T18079 T18078 prep before,subunit
R15480 T18080 T18081 punct (,filled
R15481 T18081 T18082 amod filled,area
R15482 T18082 T18079 pobj area,before
R15483 T18083 T18078 punct ),subunit
R15484 T18084 T18070 cc or,fluorescence-stained
R15485 T18085 T18088 mark after,treated
R15486 T18086 T18088 nsubjpass cells,treated
R15487 T18087 T18088 auxpass were,treated
R15488 T18088 T18069 advcl treated,were
R15489 T18089 T18088 prep with,treated
R15490 T18090 T18091 nummod 1,mg/ml
R15491 T18091 T18089 pobj mg/ml,with
R15492 T18092 T18091 prep of,mg/ml
R15493 T18093 T18095 nummod 10,dCGN
R15494 T18094 T18095 compound kDa,dCGN
R15495 T18095 T18092 pobj dCGN,of
R15496 T18096 T18097 punct (,C10
R15497 T18097 T18095 appos C10,dCGN
R15498 T18098 T18097 punct ),C10
R15499 T18099 T18095 punct ",",dCGN
R15500 T18100 T18089 cc or,with
R15501 T18101 T18089 conj with,with
R15502 T18102 T18103 nummod 1,mg/ml
R15503 T18103 T18101 pobj mg/ml,with
R15504 T18104 T18103 prep of,mg/ml
R15505 T18105 T18107 nummod 40,dCGN
R15506 T18106 T18107 compound kDa,dCGN
R15507 T18107 T18104 pobj dCGN,of
R15508 T18108 T18107 punct (,dCGN
R15509 T18109 T18107 appos C40,dCGN
R15510 T18110 T18107 punct ),dCGN
R15511 T18111 T18103 prep for,mg/ml
R15512 T18112 T18113 nummod 30,minutes
R15513 T18113 T18111 pobj minutes,for
R15514 T18114 T18113 prep at,minutes
R15515 T18115 T18116 nummod 37,°
R15516 T18116 T18120 nummod °,corresponds
R15517 T18117 T18118 compound C.,Dashed
R15518 T18118 T18119 compound Dashed,line
R15519 T18119 T18120 nsubj line,corresponds
R15520 T18120 T18120 ROOT corresponds,corresponds
R15521 T18121 T18123 aux to,stained
R15522 T18122 T18123 nsubj nuclei,stained
R15523 T18123 T18120 xcomp stained,corresponds
R15524 T18124 T18125 advmod only,with
R15525 T18125 T18123 prep with,stained
R15526 T18126 T18128 amod secondary,antibody
R15527 T18127 T18128 compound fluorescence,antibody
R15528 T18128 T18125 pobj antibody,with
R15529 T18129 T18065 punct .,isolated
R15530 T18130 T18131 compound Fluorescence,intensity
R15531 T18131 T18133 nsubjpass intensity,analyzed
R15532 T18132 T18133 auxpass was,analyzed
R15533 T18133 T18133 ROOT analyzed,analyzed
R15534 T18134 T18133 agent by,analyzed
R15535 T18135 T18136 compound flow,cytometry
R15536 T18136 T18134 pobj cytometry,by
R15537 T18137 T18138 mark as,described
R15538 T18138 T18133 advcl described,analyzed
R15539 T18139 T18133 punct .,analyzed
R15464 T18064 T18065 nsubj Nuclei,isolated
R15465 T18065 T18065 ROOT isolated,isolated

sentences

Id Subject Object Predicate Lexical cue
T17527 44-98 Sentence denotes Degraded CGN activated the NF-kB pathway in monocytes.
T17528 99-194 Sentence denotes A: THP-1 cells were transfected with a NF-κB reporter plasmid driving expression of luciferase.
T17529 195-295 Sentence denotes Cells were then treated with various concentrations of 10 kDa (triangles), or 40 kDa dCGN (squares).
T17530 296-432 Sentence denotes B: THP-1 cells treated with 1 mg/ml of 10 kDa dCGN (C10), or with 1 mg/ml of 40 kDa dCGN (C40) were lysed after various periods of time.
T17531 433-551 Sentence denotes Proteins in cell extracts were resolved by SDS-PAGE and then Western blotted for IκBα or α−tubulin as loading control.
T17532 552-554 Sentence denotes C:
T17533 555-612 Sentence denotes Degraded carrageenans (dCGN) induced activation of NF-κB.
T17534 613-792 Sentence denotes THP-1 cells were treated with nothing (control), or with 1 mg/ml of 10 kDa dCGN (C10), or with 1 mg/ml of 40 kDa dCGN (C40) for 30 minutes at 37°C. Nuclei were isolated and lysed.
T17535 793-928 Sentence denotes Proteins in nuclear extracts were resolved by SDS-PAGE and then Western blotted for NF-κB p50 subunit (p50) or NF-κB p65 subunit (p65).
T17536 929-1030 Sentence denotes Lower panels show Western blots of nuclear ERK revealing equivalent amount of protein in each sample.
T17537 1031-1085 Sentence denotes Data are representative of three separate experiments.
T17538 1086-1088 Sentence denotes D:
T17539 1089-1145 Sentence denotes Degraded carrageenan (dCGN) induced activation of NF-κB.
T17540 1146-1477 Sentence denotes Nuclei isolated from THP-1 cells were fluorescence-stained for NF-κB p50 subunit or NF-κB p65 subunit before (filled area) or after cells were treated with 1 mg/ml of 10 kDa dCGN (C10), or with 1 mg/ml of 40 kDa dCGN (C40) for 30 minutes at 37°C. Dashed line corresponds to nuclei stained only with secondary fluorescence antibody.
T17541 1478-1545 Sentence denotes Fluorescence intensity was analyzed by flow cytometry as described.
T245 0-98 Sentence denotes 10.1371/journal.pone.0008666.g007 Figure 7 Degraded CGN activated the NF-kB pathway in monocytes.
T246 99-194 Sentence denotes A: THP-1 cells were transfected with a NF-κB reporter plasmid driving expression of luciferase.
T247 195-295 Sentence denotes Cells were then treated with various concentrations of 10 kDa (triangles), or 40 kDa dCGN (squares).
T248 296-432 Sentence denotes B: THP-1 cells treated with 1 mg/ml of 10 kDa dCGN (C10), or with 1 mg/ml of 40 kDa dCGN (C40) were lysed after various periods of time.
T249 433-551 Sentence denotes Proteins in cell extracts were resolved by SDS-PAGE and then Western blotted for IκBα or α−tubulin as loading control.
T250 552-554 Sentence denotes C:
T251 555-612 Sentence denotes Degraded carrageenans (dCGN) induced activation of NF-κB.
T252 613-760 Sentence denotes THP-1 cells were treated with nothing (control), or with 1 mg/ml of 10 kDa dCGN (C10), or with 1 mg/ml of 40 kDa dCGN (C40) for 30 minutes at 37°C.
T253 761-792 Sentence denotes Nuclei were isolated and lysed.
T254 793-928 Sentence denotes Proteins in nuclear extracts were resolved by SDS-PAGE and then Western blotted for NF-κB p50 subunit (p50) or NF-κB p65 subunit (p65).
T255 929-1030 Sentence denotes Lower panels show Western blots of nuclear ERK revealing equivalent amount of protein in each sample.
T256 1031-1085 Sentence denotes Data are representative of three separate experiments.
T257 1086-1088 Sentence denotes D:
T258 1089-1145 Sentence denotes Degraded carrageenan (dCGN) induced activation of NF-κB.
T259 1146-1392 Sentence denotes Nuclei isolated from THP-1 cells were fluorescence-stained for NF-κB p50 subunit or NF-κB p65 subunit before (filled area) or after cells were treated with 1 mg/ml of 10 kDa dCGN (C10), or with 1 mg/ml of 40 kDa dCGN (C40) for 30 minutes at 37°C.
T260 1393-1477 Sentence denotes Dashed line corresponds to nuclei stained only with secondary fluorescence antibody.
T261 1478-1545 Sentence denotes Fluorescence intensity was analyzed by flow cytometry as described.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T18190 161-168 Positive_regulation denotes driving true
T18191 169-179 Gene_expression denotes expression
T18192 183-193 Protein denotes luciferase
T18193 514-518 Protein denotes IκBα
T18194 883-886 Protein denotes p50
T18195 896-899 Protein denotes p50
T18196 910-913 Protein denotes p65
T18197 923-926 Protein denotes p65
T18198 1215-1218 Protein denotes p50
T18199 1236-1239 Protein denotes p65
R15548 T18191 T18190 themeOf expression,driving
R15549 T18192 T18191 themeOf luciferase,expression
R15550 T18195 T18194 equivalentTo p50,p50
R15551 T18197 T18196 equivalentTo p65,p65

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T18200 53-56 Protein denotes CGN
T18201 71-76 Protein denotes NF-kB
T18202 44-52 Protein_catabolism denotes Degraded
T18203 57-66 Positive_regulation denotes activated
T18204 57-66 Positive_regulation denotes activated
T18205 138-152 Protein denotes NF-κB reporter
T18206 183-193 Protein denotes luciferase
T18207 169-179 Gene_expression denotes expression
T18208 514-531 Protein denotes IκBα or α−tubulin
T18209 606-611 Protein denotes NF-κB
T18210 592-602 Positive_regulation denotes activation
T18211 584-591 Positive_regulation denotes induced
T18212 877-882 Protein denotes NF-κB
T18213 883-894 Protein denotes p50 subunit
T18214 896-899 Protein denotes p50
T18215 904-909 Protein denotes NF-κB
T18216 910-921 Protein denotes p65 subunit
T18217 923-926 Protein denotes p65
T18218 972-975 Protein denotes ERK
T18219 1139-1144 Protein denotes NF-κB
T18220 1125-1135 Positive_regulation denotes activation
T18221 1117-1124 Positive_regulation denotes induced
T18222 1209-1214 Protein denotes NF-κB
T18223 1215-1226 Protein denotes p50 subunit
T18224 1230-1235 Protein denotes NF-κB
T18225 1236-1239 Protein denotes p65
R15552 T18200 T18202 themeOf CGN,Degraded
R15553 T18200 T18203 causeOf CGN,activated
R15554 T18200 T18204 causeOf CGN,activated
R15555 T18201 T18203 themeOf NF-kB,activated
R15556 T18202 T18204 themeOf Degraded,activated
R15557 T18206 T18207 themeOf luciferase,expression
R15558 T18209 T18210 themeOf NF-κB,activation
R15559 T18210 T18211 themeOf activation,induced
R15560 T18219 T18220 themeOf NF-κB,activation
R15561 T18220 T18221 themeOf activation,induced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T17517 161-168 Positive_regulation denotes driving true
T17518 169-179 Gene_expression denotes expression
T17519 183-193 Protein denotes luciferase
T17520 514-518 Protein denotes IκBα
T17521 883-886 Protein denotes p50
T17522 896-899 Protein denotes p50
T17523 910-913 Protein denotes p65
T17524 923-926 Protein denotes p65
T17525 1215-1218 Protein denotes p50
T17526 1236-1239 Protein denotes p65
R14948 T17518 T17517 themeOf expression,driving
R14949 T17519 T17518 themeOf luciferase,expression
R14950 T17522 T17521 equivalentTo p50,p50
R14951 T17524 T17523 equivalentTo p65,p65

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T17825 183-193 P08659 denotes luciferase
T17826 514-518 P25963 denotes IκBα
T17827 883-886 P19838 denotes p50
T17828 883-894 P19838 denotes p50 subunit
T17829 896-899 P19838 denotes p50
T17830 910-913 P21579 denotes p65
T17831 910-913 Q04206 denotes p65
T17832 923-926 P21579 denotes p65
T17833 923-926 Q04206 denotes p65
T17834 1215-1218 P19838 denotes p50
T17835 1215-1226 P19838 denotes p50 subunit
T17836 1236-1239 Q04206 denotes p65
T17837 1236-1239 P21579 denotes p65

test2

Id Subject Object Predicate Lexical cue Speculation
T17507 161-168 Positive_regulation denotes driving true
T17508 169-179 Gene_expression denotes expression
T17509 183-193 Protein denotes luciferase
T17510 514-518 Protein denotes IκBα
T17511 883-886 Protein denotes p50
T17512 896-899 Protein denotes p50
T17513 910-913 Protein denotes p65
T17514 923-926 Protein denotes p65
T17515 1215-1218 Protein denotes p50
T17516 1236-1239 Protein denotes p65
R14944 T17508 T17507 themeOf expression,driving
R14945 T17509 T17508 themeOf luciferase,expression
R14946 T17512 T17511 equivalentTo p50,p50
R14947 T17514 T17513 equivalentTo p65,p65