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PMC:2800179 / 12445-12998 JSONTXT

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GO-CC

Id Subject Object Predicate Lexical cue
T5447 302-307 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T5442 454-473 http://purl.obolibrary.org/obo/GO_0045289 denotes Luciferase activity
T5443 454-473 http://purl.obolibrary.org/obo/GO_0047077 denotes Luciferase activity
T5444 454-473 http://purl.obolibrary.org/obo/GO_0047712 denotes Luciferase activity
T5445 454-473 http://purl.obolibrary.org/obo/GO_0050248 denotes Luciferase activity
T5446 454-473 http://purl.obolibrary.org/obo/GO_0050397 denotes Luciferase activity

GO-BP

Id Subject Object Predicate Lexical cue
T5436 6-19 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T5437 454-473 http://purl.obolibrary.org/obo/GO_0045289 denotes Luciferase activity
T5438 454-473 http://purl.obolibrary.org/obo/GO_0047077 denotes Luciferase activity
T5439 454-473 http://purl.obolibrary.org/obo/GO_0047712 denotes Luciferase activity
T5440 454-473 http://purl.obolibrary.org/obo/GO_0050248 denotes Luciferase activity
T5441 454-473 http://purl.obolibrary.org/obo/GO_0050397 denotes Luciferase activity

2_test

Id Subject Object Predicate Lexical cue
20072622-8625304-93233368 362-364 8625304 denotes 30

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5239 0-5 NN denotes NF-kB
T5240 6-19 NN denotes Transcription
T5241 20-28 NNP denotes Reporter
T5242 29-33 NNP denotes Gene
T5243 34-39 NNP denotes Assay
T5244 40-43 DT denotes The
T5245 44-51 NN denotes plasmid
T5246 52-61 NN denotes 3XMHC-luc
T5247 62-63 -LRB- denotes (
T5248 63-64 DT denotes a
T5249 65-73 JJ denotes generous
T5250 74-78 NN denotes gift
T5251 79-83 IN denotes from
T5252 84-88 NNP denotes Drs.
T5253 89-91 NNP denotes J.
T5254 92-100 NNP denotes Westwick
T5255 101-104 CC denotes and
T5256 105-109 NNP denotes D.A.
T5257 110-117 NNP denotes Brenner
T5258 117-118 -COMMA- denotes ,
T5259 119-129 NNP denotes University
T5260 130-132 IN denotes of
T5261 133-138 NNP denotes North
T5262 139-147 NNP denotes Carolina
T5263 147-148 -COMMA- denotes ,
T5264 149-155 NNP denotes Chapel
T5265 156-160 NNP denotes Hill
T5266 160-161 -RRB- denotes )
T5267 162-170 VB denotes contains
T5268 171-176 CD denotes three
T5269 177-183 NN denotes copies
T5270 184-186 IN denotes of
T5271 187-203 JJ denotes NF-κB-responsive
T5272 204-211 NN denotes element
T5273 212-216 IN denotes from
T5274 217-220 DT denotes the
T5275 221-224 NN denotes MHC
T5276 225-230 NN denotes class
T5277 231-232 CD denotes I
T5278 233-238 NN denotes locus
T5279 238-239 -COMMA- denotes ,
T5280 240-246 VB denotes placed
T5281 247-255 RB denotes upstream
T5282 256-258 IN denotes of
T5283 259-262 DT denotes the
T5284 263-273 NN denotes luciferase
T5285 274-278 NN denotes gene
T5286 280-285 JJ denotes Human
T5287 286-295 JJ denotes monocytic
T5288 296-301 NN denotes THP-1
T5289 302-307 NN denotes cells
T5290 308-312 VB denotes were
T5291 313-324 RB denotes transiently
T5292 325-336 VB denotes transfected
T5293 337-339 IN denotes as
T5294 340-350 RB denotes previously
T5295 351-360 VB denotes described
T5296 361-362 -LRB- denotes [
T5297 362-364 CD denotes 30
T5298 364-365 -RRB- denotes ]
T5299 365-366 -COMMA- denotes ,
T5300 367-370 CC denotes and
T5301 371-375 RB denotes then
T5302 376-384 VB denotes cultured
T5303 385-388 IN denotes for
T5304 389-390 CD denotes 4
T5305 391-392 NN denotes h
T5306 393-398 RB denotes alone
T5307 399-401 CC denotes or
T5308 402-406 IN denotes with
T5309 407-417 VB denotes increasing
T5310 418-431 NN denotes concentration
T5311 432-434 IN denotes of
T5312 435-441 CC denotes either
T5313 442-445 NN denotes C10
T5314 446-448 CC denotes or
T5315 449-452 NN denotes C40
T5316 454-464 NN denotes Luciferase
T5317 465-473 NN denotes activity
T5318 474-477 VB denotes was
T5319 478-488 VB denotes determined
T5320 489-494 VB denotes using
T5321 495-496 DT denotes a
T5322 497-508 NN denotes luminometer
T5323 509-510 -LRB- denotes (
T5324 510-519 NN denotes Monolight
T5325 520-524 CD denotes 2010
T5326 525-536 NNP denotes Luminometer
T5327 536-537 -COMMA- denotes ,
T5328 538-541 NNP denotes Ann
T5329 542-547 NNP denotes Arbor
T5330 547-548 -COMMA- denotes ,
T5331 549-551 NNP denotes MI
T5332 551-552 -RRB- denotes )
R4654 T5243 T5239 arg1Of Assay,NF-kB
R4655 T5243 T5240 arg1Of Assay,Transcription
R4656 T5243 T5241 arg1Of Assay,Reporter
R4657 T5243 T5242 arg1Of Assay,Gene
R4658 T5246 T5244 arg1Of 3XMHC-luc,The
R4659 T5246 T5245 arg1Of 3XMHC-luc,plasmid
R4660 T5246 T5247 arg1Of 3XMHC-luc,(
R4661 T5246 T5267 arg1Of 3XMHC-luc,contains
R4662 T5250 T5248 arg1Of gift,a
R4663 T5250 T5249 arg1Of gift,generous
R4664 T5250 T5251 arg1Of gift,from
R4665 T5250 T5255 arg1Of gift,and
R4666 T5254 T5251 arg2Of Westwick,from
R4667 T5254 T5252 arg1Of Westwick,Drs.
R4668 T5254 T5253 arg1Of Westwick,J.
R4669 T5255 T5247 arg2Of and,(
R4670 T5257 T5255 arg2Of Brenner,and
R4671 T5257 T5256 arg1Of Brenner,D.A.
R4672 T5257 T5258 arg1Of Brenner,","
R4673 T5257 T5263 arg1Of Brenner,","
R4674 T5259 T5258 arg2Of University,","
R4675 T5259 T5260 arg1Of University,of
R4676 T5262 T5260 arg2Of Carolina,of
R4677 T5262 T5261 arg1Of Carolina,North
R4678 T5265 T5263 arg2Of Hill,","
R4679 T5265 T5264 arg1Of Hill,Chapel
R4680 T5266 T5247 arg3Of ),(
R4681 T5269 T5267 arg2Of copies,contains
R4682 T5269 T5268 arg1Of copies,three
R4683 T5269 T5270 arg1Of copies,of
R4684 T5269 T5273 arg1Of copies,from
R4685 T5269 T5279 arg1Of copies,","
R4686 T5269 T5280 arg2Of copies,placed
R4687 T5272 T5270 arg2Of element,of
R4688 T5272 T5271 arg1Of element,NF-κB-responsive
R4689 T5278 T5273 arg2Of locus,from
R4690 T5278 T5274 arg1Of locus,the
R4691 T5278 T5275 arg1Of locus,MHC
R4692 T5278 T5276 arg1Of locus,class
R4693 T5278 T5277 arg1Of locus,I
R4694 T5280 T5281 arg1Of placed,upstream
R4695 T5281 T5282 arg1Of upstream,of
R4696 T5285 T5282 arg2Of gene,of
R4697 T5285 T5283 arg1Of gene,the
R4698 T5285 T5284 arg1Of gene,luciferase
R4699 T5289 T5286 arg1Of cells,Human
R4700 T5289 T5287 arg1Of cells,monocytic
R4701 T5289 T5288 arg1Of cells,THP-1
R4702 T5289 T5290 arg1Of cells,were
R4703 T5289 T5292 arg2Of cells,transfected
R4704 T5289 T5302 arg2Of cells,cultured
R4705 T5292 T5293 arg1Of transfected,as
R4706 T5292 T5300 arg1Of transfected,and
R4707 T5295 T5294 arg1Of described,previously
R4708 T5297 T5293 arg2Of 30,as
R4709 T5297 T5295 arg1Of 30,described
R4710 T5297 T5296 arg2Of 30,[
R4711 T5298 T5296 arg3Of ],[
R4712 T5300 T5290 arg2Of and,were
R4713 T5300 T5291 arg1Of and,transiently
R4714 T5300 T5299 arg1Of and,","
R4715 T5302 T5300 arg2Of cultured,and
R4716 T5302 T5301 arg1Of cultured,then
R4717 T5302 T5303 arg1Of cultured,for
R4718 T5305 T5303 arg2Of h,for
R4719 T5305 T5304 arg1Of h,4
R4720 T5305 T5306 arg1Of h,alone
R4721 T5305 T5308 arg1Of h,with
R4722 T5306 T5307 arg1Of alone,or
R4723 T5308 T5307 arg2Of with,or
R4724 T5310 T5308 arg2Of concentration,with
R4725 T5310 T5309 arg1Of concentration,increasing
R4726 T5310 T5311 arg1Of concentration,of
R4727 T5313 T5314 arg1Of C10,or
R4728 T5314 T5311 arg2Of or,of
R4729 T5314 T5312 arg1Of or,either
R4730 T5315 T5314 arg2Of C40,or
R4731 T5317 T5316 arg1Of activity,Luciferase
R4732 T5317 T5318 arg1Of activity,was
R4733 T5317 T5319 arg2Of activity,determined
R4734 T5319 T5318 arg2Of determined,was
R4735 T5320 T5319 arg3Of using,determined
R4736 T5322 T5320 arg2Of luminometer,using
R4737 T5322 T5321 arg1Of luminometer,a
R4738 T5322 T5323 arg1Of luminometer,(
R4739 T5326 T5323 arg2Of Luminometer,(
R4740 T5326 T5324 arg1Of Luminometer,Monolight
R4741 T5326 T5325 arg1Of Luminometer,2010
R4742 T5326 T5327 arg1Of Luminometer,","
R4743 T5329 T5327 arg2Of Arbor,","
R4744 T5329 T5328 arg1Of Arbor,Ann
R4745 T5329 T5330 arg1Of Arbor,","
R4746 T5331 T5330 arg2Of MI,","
R4747 T5332 T5323 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5335 0-5 NNP denotes NF-kB
T5336 6-19 NNP denotes Transcription
T5337 20-28 NNP denotes Reporter
T5338 29-33 NNP denotes Gene
T5339 34-39 NNP denotes Assay
T5340 40-43 NNP denotes The
T5341 44-51 VBD denotes plasmid
T5342 52-61 NNP denotes 3XMHC-luc
T5343 62-63 -LRB- denotes (
T5344 63-64 DT denotes a
T5345 65-73 JJ denotes generous
T5346 74-78 NN denotes gift
T5347 79-83 IN denotes from
T5348 84-88 NNP denotes Drs.
T5349 89-91 NNP denotes J.
T5350 92-100 NNP denotes Westwick
T5351 101-104 CC denotes and
T5352 105-109 NNP denotes D.A.
T5353 110-117 NNP denotes Brenner
T5354 117-118 , denotes ,
T5355 119-129 NNP denotes University
T5356 130-132 IN denotes of
T5357 133-138 NNP denotes North
T5358 139-147 NNP denotes Carolina
T5359 147-148 , denotes ,
T5360 149-155 NNP denotes Chapel
T5361 156-160 NNP denotes Hill
T5362 160-161 -RRB- denotes )
T5363 162-170 VBZ denotes contains
T5364 171-176 CD denotes three
T5365 177-183 NNS denotes copies
T5366 184-186 IN denotes of
T5367 187-203 JJ denotes NF-κB-responsive
T5368 204-211 NN denotes element
T5369 212-216 IN denotes from
T5370 217-220 DT denotes the
T5371 221-224 NNP denotes MHC
T5372 225-230 NN denotes class
T5373 231-232 PRP denotes I
T5374 233-238 VBZ denotes locus
T5375 238-239 , denotes ,
T5376 240-246 VBN denotes placed
T5377 247-255 RB denotes upstream
T5378 256-258 IN denotes of
T5379 259-262 DT denotes the
T5380 263-273 NN denotes luciferase
T5381 274-278 NN denotes gene
T5382 278-279 . denotes .
T5383 280-285 JJ denotes Human
T5384 286-295 JJ denotes monocytic
T5385 296-301 NN denotes THP-1
T5386 302-307 NNS denotes cells
T5387 308-312 VBD denotes were
T5388 313-324 RB denotes transiently
T5389 325-336 VBN denotes transfected
T5390 337-339 IN denotes as
T5391 340-350 RB denotes previously
T5392 351-360 VBN denotes described
T5393 361-362 NNP denotes [
T5394 362-364 CD denotes 30
T5395 364-365 NNP denotes ]
T5396 365-366 , denotes ,
T5397 367-370 CC denotes and
T5398 371-375 RB denotes then
T5399 376-384 VBD denotes cultured
T5400 385-388 IN denotes for
T5401 389-390 CD denotes 4
T5402 391-392 NN denotes h
T5403 393-398 RB denotes alone
T5404 399-401 CC denotes or
T5405 402-406 IN denotes with
T5406 407-417 VBG denotes increasing
T5407 418-431 NN denotes concentration
T5408 432-434 IN denotes of
T5409 435-441 DT denotes either
T5410 442-445 NNP denotes C10
T5411 446-448 CC denotes or
T5412 449-452 NNP denotes C40
T5413 452-453 . denotes .
T5414 454-464 JJ denotes Luciferase
T5415 465-473 NN denotes activity
T5416 474-477 VBD denotes was
T5417 478-488 VBN denotes determined
T5418 489-494 VBG denotes using
T5419 495-496 DT denotes a
T5420 497-508 NN denotes luminometer
T5421 509-510 -LRB- denotes (
T5422 510-519 NNP denotes Monolight
T5423 520-524 CD denotes 2010
T5424 525-536 NNP denotes Luminometer
T5425 536-537 , denotes ,
T5426 538-541 NNP denotes Ann
T5427 542-547 NNP denotes Arbor
T5428 547-548 , denotes ,
T5429 549-551 NNP denotes MI
T5430 551-552 -RRB- denotes )
T5431 552-553 . denotes .
R4748 T5335 T5337 compound NF-kB,Reporter
R4749 T5336 T5337 compound Transcription,Reporter
R4750 T5337 T5363 nsubj Reporter,contains
R4751 T5338 T5339 compound Gene,Assay
R4752 T5339 T5340 compound Assay,The
R4753 T5340 T5342 det The,3XMHC-luc
R4754 T5341 T5342 compound plasmid,3XMHC-luc
R4755 T5342 T5363 nsubj 3XMHC-luc,contains
R4756 T5343 T5346 punct (,gift
R4757 T5344 T5346 det a,gift
R4758 T5345 T5346 amod generous,gift
R4759 T5346 T5342 appos gift,3XMHC-luc
R4760 T5347 T5346 prep from,gift
R4761 T5348 T5350 compound Drs.,Westwick
R4762 T5349 T5350 compound J.,Westwick
R4763 T5350 T5347 pobj Westwick,from
R4764 T5351 T5350 cc and,Westwick
R4765 T5352 T5353 compound D.A.,Brenner
R4766 T5353 T5350 conj Brenner,Westwick
R4767 T5354 T5353 punct ",",Brenner
R4768 T5355 T5353 appos University,Brenner
R4769 T5356 T5355 prep of,University
R4770 T5357 T5358 compound North,Carolina
R4771 T5358 T5356 pobj Carolina,of
R4772 T5359 T5353 punct ",",Brenner
R4773 T5360 T5361 compound Chapel,Hill
R4774 T5361 T5353 appos Hill,Brenner
R4775 T5362 T5353 punct ),Brenner
R4776 T5363 T5363 ROOT contains,contains
R4777 T5364 T5365 nummod three,copies
R4778 T5365 T5363 dobj copies,contains
R4779 T5366 T5365 prep of,copies
R4780 T5367 T5368 amod NF-κB-responsive,element
R4781 T5368 T5366 pobj element,of
R4782 T5369 T5368 prep from,element
R4783 T5370 T5372 det the,class
R4784 T5371 T5372 compound MHC,class
R4785 T5372 T5369 pobj class,from
R4786 T5373 T5374 compound I,locus
R4787 T5374 T5366 pobj locus,of
R4788 T5375 T5365 punct ",",copies
R4789 T5376 T5365 acl placed,copies
R4790 T5377 T5376 advmod upstream,placed
R4791 T5378 T5377 prep of,upstream
R4792 T5379 T5381 det the,gene
R4793 T5380 T5381 compound luciferase,gene
R4794 T5381 T5378 pobj gene,of
R4795 T5382 T5363 punct .,contains
R4796 T5383 T5386 amod Human,cells
R4797 T5384 T5386 amod monocytic,cells
R4798 T5385 T5386 compound THP-1,cells
R4799 T5386 T5389 nsubjpass cells,transfected
R4800 T5387 T5389 auxpass were,transfected
R4801 T5388 T5389 advmod transiently,transfected
R4802 T5389 T5389 ROOT transfected,transfected
R4803 T5390 T5392 mark as,described
R4804 T5391 T5392 advmod previously,described
R4805 T5392 T5389 advcl described,transfected
R4806 T5393 T5395 compound [,]
R4807 T5394 T5395 compound 30,]
R4808 T5395 T5392 dobj ],described
R4809 T5396 T5389 punct ",",transfected
R4810 T5397 T5389 cc and,transfected
R4811 T5398 T5399 advmod then,cultured
R4812 T5399 T5389 conj cultured,transfected
R4813 T5400 T5399 prep for,cultured
R4814 T5401 T5402 nummod 4,h
R4815 T5402 T5400 pobj h,for
R4816 T5403 T5402 advmod alone,h
R4817 T5404 T5400 cc or,for
R4818 T5405 T5400 conj with,for
R4819 T5406 T5407 amod increasing,concentration
R4820 T5407 T5405 pobj concentration,with
R4821 T5408 T5407 prep of,concentration
R4822 T5409 T5410 det either,C10
R4823 T5410 T5408 pobj C10,of
R4824 T5411 T5410 cc or,C10
R4825 T5412 T5410 conj C40,C10
R4826 T5413 T5389 punct .,transfected
R4827 T5414 T5415 amod Luciferase,activity
R4828 T5415 T5417 nsubjpass activity,determined
R4829 T5416 T5417 auxpass was,determined
R4830 T5417 T5417 ROOT determined,determined
R4831 T5418 T5417 advcl using,determined
R4832 T5419 T5420 det a,luminometer
R4833 T5420 T5418 dobj luminometer,using
R4834 T5421 T5420 punct (,luminometer
R4835 T5422 T5420 appos Monolight,luminometer
R4836 T5423 T5424 nummod 2010,Luminometer
R4837 T5424 T5424 ROOT Luminometer,Luminometer
R4838 T5425 T5424 punct ",",Luminometer
R4839 T5426 T5427 compound Ann,Arbor
R4840 T5427 T5424 conj Arbor,Luminometer
R4841 T5428 T5427 punct ",",Arbor
R4842 T5429 T5427 conj MI,Arbor
R4843 T5430 T5422 punct ),Monolight
R4844 T5431 T5417 punct .,determined

sentences

Id Subject Object Predicate Lexical cue
T5235 0-39 Sentence denotes NF-kB Transcription Reporter Gene Assay
T5236 40-279 Sentence denotes The plasmid 3XMHC-luc (a generous gift from Drs. J. Westwick and D.A. Brenner, University of North Carolina, Chapel Hill) contains three copies of NF-κB-responsive element from the MHC class I locus, placed upstream of the luciferase gene.
T5237 280-453 Sentence denotes Human monocytic THP-1 cells were transiently transfected as previously described [30], and then cultured for 4 h alone or with increasing concentration of either C10 or C40.
T5238 454-553 Sentence denotes Luciferase activity was determined using a luminometer (Monolight 2010 Luminometer, Ann Arbor, MI).
T105 0-39 Sentence denotes NF-kB Transcription Reporter Gene Assay
T106 40-88 Sentence denotes The plasmid 3XMHC-luc (a generous gift from Drs.
T107 89-91 Sentence denotes J.
T108 92-109 Sentence denotes Westwick and D.A.
T109 110-279 Sentence denotes Brenner, University of North Carolina, Chapel Hill) contains three copies of NF-κB-responsive element from the MHC class I locus, placed upstream of the luciferase gene.
T110 280-453 Sentence denotes Human monocytic THP-1 cells were transiently transfected as previously described [30], and then cultured for 4 h alone or with increasing concentration of either C10 or C40.
T111 454-553 Sentence denotes Luciferase activity was determined using a luminometer (Monolight 2010 Luminometer, Ann Arbor, MI).

events-check-again

Id Subject Object Predicate Lexical cue
T5452 263-273 Protein denotes luciferase
T5453 454-464 Protein denotes Luciferase

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5454 187-192 Protein denotes NF-κB
T5455 221-238 Protein denotes MHC class I locus
T5456 263-278 Protein denotes luciferase gene
T5457 454-464 Protein denotes Luciferase

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T5233 263-273 Protein denotes luciferase
T5234 454-464 Protein denotes Luciferase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5333 263-273 P08659 denotes luciferase
T5334 454-464 P08659 denotes Luciferase

test2

Id Subject Object Predicate Lexical cue
T5231 263-273 Protein denotes luciferase
T5232 454-464 Protein denotes Luciferase