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PMC:2800179 / 1189-1340 JSONTXT

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GO-CC

Id Subject Object Predicate Lexical cue
T604 84-89 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-BP

Id Subject Object Predicate Lexical cue
T589 52-61 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T598 124-140 http://purl.obolibrary.org/obo/GO_0051092 denotes NF-κB activation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T274 6-13 RB denotes Finally
T275 13-14 -COMMA- denotes ,
T276 15-19 NN denotes dCGN
T277 20-30 VB denotes stimulated
T278 31-36 NN denotes TNF-α
T279 37-47 NN denotes expression
T280 48-51 CC denotes and
T281 52-61 NN denotes secretion
T282 62-64 IN denotes by
T283 65-69 CC denotes both
T284 70-73 NN denotes PBM
T285 74-77 CC denotes and
T286 78-83 NN denotes THP-1
T287 84-89 NN denotes cells
T288 91-94 PDT denotes All
T289 95-100 DT denotes these
T290 101-108 NN denotes effects
T291 109-113 VB denotes were
T292 114-120 VB denotes linked
T293 121-123 TO denotes to
T294 124-129 NN denotes NF-κB
T295 130-140 NN denotes activation
T296 142-147 DT denotes These
R213 T276 T277 arg1Of dCGN,stimulated
R214 T277 T274 arg1Of stimulated,Finally
R215 T277 T275 arg1Of stimulated,","
R216 T277 T282 arg1Of stimulated,by
R217 T279 T280 arg1Of expression,and
R218 T280 T277 arg2Of and,stimulated
R219 T280 T278 arg1Of and,TNF-α
R220 T281 T280 arg2Of secretion,and
R221 T284 T285 arg1Of PBM,and
R222 T285 T282 arg2Of and,by
R223 T285 T283 arg1Of and,both
R224 T287 T285 arg2Of cells,and
R225 T287 T286 arg1Of cells,THP-1
R226 T290 T288 arg1Of effects,All
R227 T290 T289 arg1Of effects,these
R228 T290 T291 arg1Of effects,were
R229 T290 T292 arg2Of effects,linked
R230 T292 T291 arg2Of linked,were
R231 T292 T293 arg1Of linked,to
R232 T295 T293 arg2Of activation,to
R233 T295 T294 arg1Of activation,NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T523 4-5 . denotes .
T524 6-13 RB denotes Finally
T525 13-14 , denotes ,
T526 15-19 NNP denotes dCGN
T527 20-30 VBD denotes stimulated
T528 31-36 JJ denotes TNF-α
T529 37-47 NN denotes expression
T530 48-51 CC denotes and
T531 52-61 NN denotes secretion
T532 62-64 IN denotes by
T533 65-69 DT denotes both
T534 70-73 NNP denotes PBM
T535 74-77 CC denotes and
T536 78-83 NNP denotes THP-1
T537 84-89 NNS denotes cells
T538 89-90 . denotes .
T539 91-94 PDT denotes All
T540 95-100 DT denotes these
T541 101-108 NNS denotes effects
T542 109-113 VBD denotes were
T543 114-120 VBN denotes linked
T544 121-123 TO denotes to
T545 124-129 NNP denotes NF-κB
T546 130-140 NN denotes activation
T547 140-141 . denotes .
T548 142-147 DT denotes These
R453 T524 T527 advmod Finally,stimulated
R454 T525 T527 punct ",",stimulated
R455 T526 T527 nsubj dCGN,stimulated
R456 T527 T527 ROOT stimulated,stimulated
R457 T528 T529 amod TNF-α,expression
R458 T529 T527 dobj expression,stimulated
R459 T530 T529 cc and,expression
R460 T531 T529 conj secretion,expression
R461 T532 T527 prep by,stimulated
R462 T533 T534 preconj both,PBM
R463 T534 T537 nmod PBM,cells
R464 T535 T534 cc and,PBM
R465 T536 T534 conj THP-1,PBM
R466 T537 T532 pobj cells,by
R467 T538 T527 punct .,stimulated
R468 T539 T541 predet All,effects
R469 T540 T541 det these,effects
R470 T541 T543 nsubjpass effects,linked
R471 T542 T543 auxpass were,linked
R472 T543 T543 ROOT linked,linked
R473 T544 T543 prep to,linked
R474 T545 T546 compound NF-κB,activation
R475 T546 T544 pobj activation,to
R476 T547 T543 punct .,linked

sentences

Id Subject Object Predicate Lexical cue
T81 6-90 Sentence denotes Finally, dCGN stimulated TNF-α expression and secretion by both PBM and THP-1 cells.
T82 91-141 Sentence denotes All these effects were linked to NF-κB activation.
T12 6-90 Sentence denotes Finally, dCGN stimulated TNF-α expression and secretion by both PBM and THP-1 cells.
T13 91-141 Sentence denotes All these effects were linked to NF-κB activation.

events-check-again

Id Subject Object Predicate Lexical cue
T657 20-30 Positive_regulation denotes stimulated
T658 20-30 Positive_regulation denotes stimulated
T659 31-36 Protein denotes TNF-α
T660 37-47 Gene_expression denotes expression
T661 52-61 Localization denotes secretion
R532 T659 T660 themeOf TNF-α,expression
R533 T659 T661 themeOf TNF-α,secretion
R534 T660 T658 themeOf expression,stimulated
R535 T661 T657 themeOf secretion,stimulated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T675 15-19 Protein denotes dCGN
T676 31-36 Protein denotes TNF-α
T677 37-47 Gene_expression denotes expression
T678 20-30 Positive_regulation denotes stimulated
T679 124-129 Protein denotes NF-κB
T680 130-140 Positive_regulation denotes activation
R544 T675 T678 causeOf dCGN,stimulated
R545 T676 T677 themeOf TNF-α,expression
R546 T677 T678 themeOf expression,stimulated
R547 T679 T680 themeOf NF-κB,activation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T66 20-30 Positive_regulation denotes stimulated
T67 20-30 Positive_regulation denotes stimulated
T68 31-36 Protein denotes TNF-α
T69 37-47 Gene_expression denotes expression
T70 52-61 Localization denotes secretion
R24 T68 T69 themeOf TNF-α,expression
R25 T68 T70 themeOf TNF-α,secretion
R26 T69 T67 themeOf expression,stimulated
R27 T70 T66 themeOf secretion,stimulated

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T324 31-34 P01375 denotes TNF
T325 31-36 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T46 20-30 Positive_regulation denotes stimulated
T47 31-36 Protein denotes TNF-α
T48 37-47 Gene_expression denotes expression
T49 52-61 Localization denotes secretion
R19 T47 T48 themeOf TNF-α,expression
R20 T48 T46 themeOf expression,stimulated
R21 T49 T46 themeOf secretion,stimulated