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PMC:2800179 / 1164-1311 JSONTXT

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GO-CC

Id Subject Object Predicate Lexical cue
T604 109-114 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T606 21-29 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T607 21-29 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody

GO-MF

Id Subject Object Predicate Lexical cue
T599 21-29 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-BP

Id Subject Object Predicate Lexical cue
T589 77-86 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T271 4-8 IN denotes with
T272 9-20 JJ denotes anti-ICAM-1
T273 21-29 NN denotes antibody
T274 31-38 RB denotes Finally
T275 38-39 -COMMA- denotes ,
T276 40-44 NN denotes dCGN
T277 45-55 VB denotes stimulated
T278 56-61 NN denotes TNF-α
T279 62-72 NN denotes expression
T280 73-76 CC denotes and
T281 77-86 NN denotes secretion
T282 87-89 IN denotes by
T283 90-94 CC denotes both
T284 95-98 NN denotes PBM
T285 99-102 CC denotes and
T286 103-108 NN denotes THP-1
T287 109-114 NN denotes cells
T288 116-119 PDT denotes All
T289 120-125 DT denotes these
T290 126-133 NN denotes effects
T291 134-138 VB denotes were
T292 139-145 VB denotes linked
R211 T273 T271 arg2Of antibody,with
R212 T273 T272 arg1Of antibody,anti-ICAM-1
R213 T276 T277 arg1Of dCGN,stimulated
R214 T277 T274 arg1Of stimulated,Finally
R215 T277 T275 arg1Of stimulated,","
R216 T277 T282 arg1Of stimulated,by
R217 T279 T280 arg1Of expression,and
R218 T280 T277 arg2Of and,stimulated
R219 T280 T278 arg1Of and,TNF-α
R220 T281 T280 arg2Of secretion,and
R221 T284 T285 arg1Of PBM,and
R222 T285 T282 arg2Of and,by
R223 T285 T283 arg1Of and,both
R224 T287 T285 arg2Of cells,and
R225 T287 T286 arg1Of cells,THP-1
R226 T290 T288 arg1Of effects,All
R227 T290 T289 arg1Of effects,these
R228 T290 T291 arg1Of effects,were
R229 T290 T292 arg2Of effects,linked
R230 T292 T291 arg2Of linked,were

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T520 4-8 IN denotes with
T521 9-20 JJ denotes anti-ICAM-1
T522 21-29 NN denotes antibody
T523 29-30 . denotes .
T524 31-38 RB denotes Finally
T525 38-39 , denotes ,
T526 40-44 NNP denotes dCGN
T527 45-55 VBD denotes stimulated
T528 56-61 JJ denotes TNF-α
T529 62-72 NN denotes expression
T530 73-76 CC denotes and
T531 77-86 NN denotes secretion
T532 87-89 IN denotes by
T533 90-94 DT denotes both
T534 95-98 NNP denotes PBM
T535 99-102 CC denotes and
T536 103-108 NNP denotes THP-1
T537 109-114 NNS denotes cells
T538 114-115 . denotes .
T539 116-119 PDT denotes All
T540 120-125 DT denotes these
T541 126-133 NNS denotes effects
T542 134-138 VBD denotes were
T543 139-145 VBN denotes linked
R450 T521 T522 amod anti-ICAM-1,antibody
R451 T522 T520 pobj antibody,with
R453 T524 T527 advmod Finally,stimulated
R454 T525 T527 punct ",",stimulated
R455 T526 T527 nsubj dCGN,stimulated
R456 T527 T527 ROOT stimulated,stimulated
R457 T528 T529 amod TNF-α,expression
R458 T529 T527 dobj expression,stimulated
R459 T530 T529 cc and,expression
R460 T531 T529 conj secretion,expression
R461 T532 T527 prep by,stimulated
R462 T533 T534 preconj both,PBM
R463 T534 T537 nmod PBM,cells
R464 T535 T534 cc and,PBM
R465 T536 T534 conj THP-1,PBM
R466 T537 T532 pobj cells,by
R467 T538 T527 punct .,stimulated
R468 T539 T541 predet All,effects
R469 T540 T541 det these,effects
R470 T541 T543 nsubjpass effects,linked
R471 T542 T543 auxpass were,linked
R472 T543 T543 ROOT linked,linked

sentences

Id Subject Object Predicate Lexical cue
T81 31-115 Sentence denotes Finally, dCGN stimulated TNF-α expression and secretion by both PBM and THP-1 cells.
T12 31-115 Sentence denotes Finally, dCGN stimulated TNF-α expression and secretion by both PBM and THP-1 cells.

events-check-again

Id Subject Object Predicate Lexical cue
T657 45-55 Positive_regulation denotes stimulated
T658 45-55 Positive_regulation denotes stimulated
T659 56-61 Protein denotes TNF-α
T660 62-72 Gene_expression denotes expression
T661 77-86 Localization denotes secretion
R532 T659 T660 themeOf TNF-α,expression
R533 T659 T661 themeOf TNF-α,secretion
R534 T660 T658 themeOf expression,stimulated
R535 T661 T657 themeOf secretion,stimulated

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T674 9-29 Protein denotes anti-ICAM-1 antibody
T675 40-44 Protein denotes dCGN
T676 56-61 Protein denotes TNF-α
T677 62-72 Gene_expression denotes expression
T678 45-55 Positive_regulation denotes stimulated
R544 T675 T678 causeOf dCGN,stimulated
R545 T676 T677 themeOf TNF-α,expression
R546 T677 T678 themeOf expression,stimulated

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T66 45-55 Positive_regulation denotes stimulated
T67 45-55 Positive_regulation denotes stimulated
T68 56-61 Protein denotes TNF-α
T69 62-72 Gene_expression denotes expression
T70 77-86 Localization denotes secretion
R24 T68 T69 themeOf TNF-α,expression
R25 T68 T70 themeOf TNF-α,secretion
R26 T69 T67 themeOf expression,stimulated
R27 T70 T66 themeOf secretion,stimulated

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T323 14-20 P05362 denotes ICAM-1
T324 56-59 P01375 denotes TNF
T325 56-61 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T46 45-55 Positive_regulation denotes stimulated
T47 56-61 Protein denotes TNF-α
T48 62-72 Gene_expression denotes expression
T49 77-86 Localization denotes secretion
R19 T47 T48 themeOf TNF-α,expression
R20 T48 T46 themeOf expression,stimulated
R21 T49 T46 themeOf secretion,stimulated