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PMC:2800179 / 10963-11306 JSONTXT

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GO-CC

Id Subject Object Predicate Lexical cue
T4715 41-46 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4716 276-280 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

GO-BP

Id Subject Object Predicate Lexical cue
T4714 276-288 http://purl.obolibrary.org/obo/GO_0001906 denotes cell killing

2_test

Id Subject Object Predicate Lexical cue
20072622-3782828-93233367 296-298 3782828 denotes 29

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4587 0-3 NN denotes TNF
T4588 4-12 NNP denotes Activity
T4589 13-21 NNP denotes Bioassay
T4590 22-31 NN denotes Monocytes
T4591 32-34 CC denotes or
T4592 35-40 NN denotes THP-1
T4593 41-46 NN denotes cells
T4594 47-51 VB denotes were
T4595 52-60 VB denotes cultured
T4596 61-65 IN denotes with
T4597 66-68 CC denotes or
T4598 69-76 IN denotes without
T4599 77-86 JJ denotes different
T4600 87-101 NN denotes concentrations
T4601 102-104 IN denotes of
T4602 105-109 NN denotes CGNs
T4603 110-112 CC denotes or
T4604 113-116 NN denotes LPS
T4605 117-118 -LRB- denotes (
T4606 118-128 NN denotes Salmonella
T4607 129-136 NN denotes typhosa
T4608 136-137 -COMMA- denotes ,
T4609 138-143 NNP denotes Sigma
T4610 143-144 -RRB- denotes )
T4611 145-148 IN denotes for
T4612 149-151 CD denotes 24
T4613 152-153 NN denotes h
T4614 154-156 CC denotes or
T4615 157-160 DT denotes the
T4616 161-170 VB denotes indicated
T4617 171-175 NN denotes time
T4618 177-189 RB denotes Biologically
T4619 190-196 JJ denotes active
T4620 197-204 NN denotes TNF-α/β
T4621 205-207 IN denotes in
T4622 208-214 NN denotes tissue
T4623 215-222 NN denotes culture
T4624 223-234 NN denotes supernatant
T4625 235-238 VB denotes was
T4626 239-247 VB denotes measured
T4627 248-253 VB denotes using
T4628 254-257 DT denotes the
T4629 258-262 NN denotes WEHI
T4630 263-266 CD denotes 164
T4631 267-272 NN denotes clone
T4632 273-280 NN denotes 13-cell
T4633 281-288 NN denotes killing
T4634 289-294 NN denotes assay
T4635 295-296 -LRB- denotes [
T4636 296-298 CD denotes 29
T4637 298-299 -RRB- denotes ]
T4638 301-304 NN denotes TNF
T4639 305-319 NN denotes concentrations
T4640 320-323 VB denotes are
T4641 324-333 VB denotes expressed
T4642 334-336 IN denotes as
T4643 337-342 NN denotes pg/ml
R4092 T4589 T4587 arg1Of Bioassay,TNF
R4093 T4589 T4588 arg1Of Bioassay,Activity
R4094 T4590 T4591 arg1Of Monocytes,or
R4095 T4591 T4594 arg1Of or,were
R4096 T4591 T4595 arg2Of or,cultured
R4097 T4593 T4591 arg2Of cells,or
R4098 T4593 T4592 arg1Of cells,THP-1
R4099 T4595 T4594 arg2Of cultured,were
R4100 T4595 T4596 arg1Of cultured,with
R4101 T4595 T4598 arg1Of cultured,without
R4102 T4596 T4597 arg1Of with,or
R4103 T4598 T4597 arg2Of without,or
R4104 T4600 T4596 arg2Of concentrations,with
R4105 T4600 T4598 arg2Of concentrations,without
R4106 T4600 T4599 arg1Of concentrations,different
R4107 T4600 T4601 arg1Of concentrations,of
R4108 T4600 T4611 arg1Of concentrations,for
R4109 T4602 T4603 arg1Of CGNs,or
R4110 T4603 T4601 arg2Of or,of
R4111 T4603 T4605 arg1Of or,(
R4112 T4604 T4603 arg2Of LPS,or
R4113 T4607 T4605 arg2Of typhosa,(
R4114 T4607 T4606 arg1Of typhosa,Salmonella
R4115 T4607 T4608 arg1Of typhosa,","
R4116 T4609 T4608 arg2Of Sigma,","
R4117 T4610 T4605 arg3Of ),(
R4118 T4613 T4612 arg1Of h,24
R4119 T4613 T4614 arg1Of h,or
R4120 T4614 T4611 arg2Of or,for
R4121 T4617 T4614 arg2Of time,or
R4122 T4617 T4615 arg1Of time,the
R4123 T4617 T4616 arg2Of time,indicated
R4124 T4619 T4618 arg1Of active,Biologically
R4125 T4620 T4619 arg1Of TNF-α/β,active
R4126 T4620 T4621 arg1Of TNF-α/β,in
R4127 T4620 T4625 arg1Of TNF-α/β,was
R4128 T4620 T4626 arg2Of TNF-α/β,measured
R4129 T4624 T4621 arg2Of supernatant,in
R4130 T4624 T4622 arg1Of supernatant,tissue
R4131 T4624 T4623 arg1Of supernatant,culture
R4132 T4626 T4625 arg2Of measured,was
R4133 T4627 T4626 arg3Of using,measured
R4134 T4627 T4635 arg1Of using,[
R4135 T4634 T4627 arg2Of assay,using
R4136 T4634 T4628 arg1Of assay,the
R4137 T4634 T4629 arg1Of assay,WEHI
R4138 T4634 T4630 arg1Of assay,164
R4139 T4634 T4631 arg1Of assay,clone
R4140 T4634 T4632 arg1Of assay,13-cell
R4141 T4634 T4633 arg1Of assay,killing
R4142 T4636 T4635 arg2Of 29,[
R4143 T4637 T4635 arg3Of ],[
R4144 T4639 T4638 arg1Of concentrations,TNF
R4145 T4639 T4640 arg1Of concentrations,are
R4146 T4639 T4641 arg2Of concentrations,expressed
R4147 T4641 T4640 arg2Of expressed,are
R4148 T4641 T4642 arg1Of expressed,as
R4149 T4643 T4642 arg2Of pg/ml,as

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T4648 0-3 NNP denotes TNF
T4649 4-12 NNP denotes Activity
T4650 13-21 NNP denotes Bioassay
T4651 22-31 NNPS denotes Monocytes
T4652 32-34 CC denotes or
T4653 35-40 CD denotes THP-1
T4654 41-46 NNS denotes cells
T4655 47-51 VBD denotes were
T4656 52-60 VBN denotes cultured
T4657 61-65 IN denotes with
T4658 66-68 CC denotes or
T4659 69-76 IN denotes without
T4660 77-86 JJ denotes different
T4661 87-101 NNS denotes concentrations
T4662 102-104 IN denotes of
T4663 105-109 NNS denotes CGNs
T4664 110-112 CC denotes or
T4665 113-116 NNP denotes LPS
T4666 117-118 -LRB- denotes (
T4667 118-128 NNP denotes Salmonella
T4668 129-136 NN denotes typhosa
T4669 136-137 , denotes ,
T4670 138-143 NNP denotes Sigma
T4671 143-144 -RRB- denotes )
T4672 145-148 IN denotes for
T4673 149-151 CD denotes 24
T4674 152-153 NN denotes h
T4675 154-156 CC denotes or
T4676 157-160 DT denotes the
T4677 161-170 JJ denotes indicated
T4678 171-175 NN denotes time
T4679 175-176 . denotes .
T4680 177-189 RB denotes Biologically
T4681 190-196 JJ denotes active
T4682 197-202 NNP denotes TNF-α
T4683 202-203 NN denotes /
T4684 203-204 NN denotes β
T4685 205-207 IN denotes in
T4686 208-214 NN denotes tissue
T4687 215-222 NN denotes culture
T4688 223-234 NN denotes supernatant
T4689 235-238 VBD denotes was
T4690 239-247 VBN denotes measured
T4691 248-253 VBG denotes using
T4692 254-257 DT denotes the
T4693 258-262 NNP denotes WEHI
T4694 263-266 CD denotes 164
T4695 267-272 NN denotes clone
T4696 273-280 JJ denotes 13-cell
T4697 281-288 VBG denotes killing
T4698 289-294 NN denotes assay
T4699 295-296 NNP denotes [
T4700 296-298 CD denotes 29
T4701 298-299 NNP denotes ]
T4702 299-300 . denotes .
T4703 301-304 NNP denotes TNF
T4704 305-319 NNS denotes concentrations
T4705 320-323 VBP denotes are
T4706 324-333 VBN denotes expressed
T4707 334-336 IN denotes as
T4708 337-342 NN denotes pg/ml
T4709 342-343 . denotes .
R4150 T4648 T4651 compound TNF,Monocytes
R4151 T4649 T4651 compound Activity,Monocytes
R4152 T4650 T4651 compound Bioassay,Monocytes
R4153 T4651 T4656 nsubjpass Monocytes,cultured
R4154 T4652 T4651 cc or,Monocytes
R4155 T4653 T4654 nummod THP-1,cells
R4156 T4654 T4651 conj cells,Monocytes
R4157 T4655 T4656 auxpass were,cultured
R4158 T4656 T4656 ROOT cultured,cultured
R4159 T4657 T4656 prep with,cultured
R4160 T4658 T4657 cc or,with
R4161 T4659 T4657 conj without,with
R4162 T4660 T4661 amod different,concentrations
R4163 T4661 T4659 pobj concentrations,without
R4164 T4662 T4661 prep of,concentrations
R4165 T4663 T4662 pobj CGNs,of
R4166 T4664 T4663 cc or,CGNs
R4167 T4665 T4663 conj LPS,CGNs
R4168 T4666 T4668 punct (,typhosa
R4169 T4667 T4668 compound Salmonella,typhosa
R4170 T4668 T4665 appos typhosa,LPS
R4171 T4669 T4668 punct ",",typhosa
R4172 T4670 T4668 npadvmod Sigma,typhosa
R4173 T4671 T4668 punct ),typhosa
R4174 T4672 T4665 prep for,LPS
R4175 T4673 T4674 nummod 24,h
R4176 T4674 T4672 pobj h,for
R4177 T4675 T4674 cc or,h
R4178 T4676 T4678 det the,time
R4179 T4677 T4678 amod indicated,time
R4180 T4678 T4674 conj time,h
R4181 T4679 T4656 punct .,cultured
R4182 T4680 T4684 advmod Biologically,β
R4183 T4681 T4684 amod active,β
R4184 T4682 T4684 compound TNF-α,β
R4185 T4683 T4684 compound /,β
R4186 T4684 T4690 nsubjpass β,measured
R4187 T4685 T4684 prep in,β
R4188 T4686 T4687 compound tissue,culture
R4189 T4687 T4685 pobj culture,in
R4190 T4688 T4690 nsubjpass supernatant,measured
R4191 T4689 T4690 auxpass was,measured
R4192 T4690 T4690 ROOT measured,measured
R4193 T4691 T4690 advcl using,measured
R4194 T4692 T4698 det the,assay
R4195 T4693 T4696 nmod WEHI,13-cell
R4196 T4694 T4693 nummod 164,WEHI
R4197 T4695 T4696 compound clone,13-cell
R4198 T4696 T4698 compound 13-cell,assay
R4199 T4697 T4698 compound killing,assay
R4200 T4698 T4691 dobj assay,using
R4201 T4699 T4701 nmod [,]
R4202 T4700 T4701 nummod 29,]
R4203 T4701 T4698 appos ],assay
R4204 T4702 T4690 punct .,measured
R4205 T4703 T4704 compound TNF,concentrations
R4206 T4704 T4706 nsubjpass concentrations,expressed
R4207 T4705 T4706 auxpass are,expressed
R4208 T4706 T4706 ROOT expressed,expressed
R4209 T4707 T4706 prep as,expressed
R4210 T4708 T4707 pobj pg/ml,as
R4211 T4709 T4706 punct .,expressed

UBERON-AE

Id Subject Object Predicate Lexical cue
T4578 208-214 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue

sentences

Id Subject Object Predicate Lexical cue
T4583 0-21 Sentence denotes TNF Activity Bioassay
T4584 22-176 Sentence denotes Monocytes or THP-1 cells were cultured with or without different concentrations of CGNs or LPS (Salmonella typhosa, Sigma) for 24 h or the indicated time.
T4585 177-300 Sentence denotes Biologically active TNF-α/β in tissue culture supernatant was measured using the WEHI 164 clone 13-cell killing assay [29].
T4586 301-343 Sentence denotes TNF concentrations are expressed as pg/ml.
T96 0-21 Sentence denotes TNF Activity Bioassay
T97 22-176 Sentence denotes Monocytes or THP-1 cells were cultured with or without different concentrations of CGNs or LPS (Salmonella typhosa, Sigma) for 24 h or the indicated time.
T98 177-300 Sentence denotes Biologically active TNF-α/β in tissue culture supernatant was measured using the WEHI 164 clone 13-cell killing assay [29].
T99 301-343 Sentence denotes TNF concentrations are expressed as pg/ml.

events-check-again

Id Subject Object Predicate Lexical cue
T4725 0-3 Protein denotes TNF
T4726 197-202 Protein denotes TNF-α
T4727 203-204 Protein denotes β
T4728 301-304 Protein denotes TNF

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4729 0-12 Protein denotes TNF Activity
T4730 197-204 Protein denotes TNF-α/β
T4731 301-304 Protein denotes TNF
T4732 324-333 Gene_expression denotes expressed
R4212 T4731 T4732 themeOf TNF,expressed

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4581 203-204 Protein denotes β
T4582 301-304 Protein denotes TNF
T4579 0-3 Protein denotes TNF
T4580 197-202 Protein denotes TNF-α

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T4644 0-3 P01375 denotes TNF
T4645 197-200 P01375 denotes TNF
T4646 197-202 P01375 denotes TNF-α
T4647 301-304 P01375 denotes TNF

test2

Id Subject Object Predicate Lexical cue
T4574 0-3 Protein denotes TNF
T4575 197-202 Protein denotes TNF-α
T4576 203-204 Protein denotes β
T4577 301-304 Protein denotes TNF