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PMC:2800179 / 0-154 JSONTXT

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GO-BP

Id Subject Object Predicate Lexical cue
T584 0-8 http://purl.obolibrary.org/obo/GO_0009056 denotes Degraded
T587 53-66 http://purl.obolibrary.org/obo/GO_1990774 denotes TNF Secretion
T588 57-66 http://purl.obolibrary.org/obo/GO_0046903 denotes Secretion

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T84 0-8 NNP denotes Degraded
T85 9-20 NNP denotes Carrageenan
T86 21-28 NNP denotes Causing
T87 29-36 NNP denotes Colitis
T88 37-39 IN denotes in
T89 40-44 NNP denotes Rats
T90 45-52 VB denotes Induces
T91 53-56 NN denotes TNF
T92 57-66 NN denotes Secretion
T93 67-70 CC denotes and
T94 71-77 NN denotes ICAM-1
T95 78-90 NN denotes Upregulation
T96 91-93 IN denotes in
T97 94-103 NN denotes Monocytes
T98 104-111 IN denotes through
T99 112-117 NN denotes NF-κB
T100 118-128 NN denotes Activation
T101 129-140 NN denotes Carrageenan
R28 T87 T84 arg1Of Colitis,Degraded
R29 T87 T85 arg1Of Colitis,Carrageenan
R30 T87 T86 arg1Of Colitis,Causing
R31 T87 T88 arg1Of Colitis,in
R32 T87 T90 arg1Of Colitis,Induces
R33 T89 T88 arg2Of Rats,in
R34 T90 T98 arg1Of Induces,through
R35 T92 T91 arg1Of Secretion,TNF
R36 T92 T93 arg1Of Secretion,and
R37 T93 T90 arg2Of and,Induces
R38 T93 T96 arg1Of and,in
R39 T95 T93 arg2Of Upregulation,and
R40 T95 T94 arg1Of Upregulation,ICAM-1
R41 T97 T96 arg2Of Monocytes,in
R42 T100 T98 arg2Of Activation,through
R43 T100 T99 arg1Of Activation,NF-κB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T326 0-8 JJ denotes Degraded
T327 9-20 NNP denotes Carrageenan
T328 21-28 NNP denotes Causing
T329 29-36 NNP denotes Colitis
T330 37-39 IN denotes in
T331 40-44 NNP denotes Rats
T332 45-52 VBZ denotes Induces
T333 53-56 NNP denotes TNF
T334 57-66 NNP denotes Secretion
T335 67-70 CC denotes and
T336 71-77 NNP denotes ICAM-1
T337 78-90 NNP denotes Upregulation
T338 91-93 IN denotes in
T339 94-103 NNP denotes Monocytes
T340 104-111 IN denotes through
T341 112-117 NNP denotes NF-κB
T342 118-128 NNP denotes Activation
T343 129-140 NNP denotes Carrageenan
R255 T326 T329 amod Degraded,Colitis
R256 T327 T329 compound Carrageenan,Colitis
R257 T328 T329 compound Causing,Colitis
R258 T329 T332 nsubj Colitis,Induces
R259 T330 T329 prep in,Colitis
R260 T331 T330 pobj Rats,in
R261 T332 T332 ROOT Induces,Induces
R262 T333 T334 compound TNF,Secretion
R263 T334 T332 dobj Secretion,Induces
R264 T335 T334 cc and,Secretion
R265 T336 T337 compound ICAM-1,Upregulation
R266 T337 T334 conj Upregulation,Secretion
R267 T338 T337 prep in,Upregulation
R268 T339 T338 pobj Monocytes,in
R269 T340 T332 prep through,Induces
R270 T341 T343 compound NF-κB,Carrageenan
R271 T342 T343 compound Activation,Carrageenan
R272 T343 T340 pobj Carrageenan,through

sentences

Id Subject Object Predicate Lexical cue
T71 0-128 Sentence denotes Degraded Carrageenan Causing Colitis in Rats Induces TNF Secretion and ICAM-1 Upregulation in Monocytes through NF-κB Activation

events-check-again

Id Subject Object Predicate Lexical cue
T644 45-52 Positive_regulation denotes Induces
T645 45-52 Positive_regulation denotes Induces
T646 53-56 Protein denotes TNF
T647 57-66 Localization denotes Secretion
T648 71-77 Protein denotes ICAM-1
T649 78-90 Positive_regulation denotes Upregulation
T650 104-111 Positive_regulation denotes through
T651 104-111 Positive_regulation denotes through
R524 T644 T650 themeOf Induces,through
R525 T645 T651 themeOf Induces,through
R526 T646 T647 themeOf TNF,Secretion
R527 T647 T644 themeOf Secretion,Induces
R528 T648 T649 themeOf ICAM-1,Upregulation
R529 T649 T645 themeOf Upregulation,Induces

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T662 53-56 Protein denotes TNF
T663 112-117 Protein denotes NF-κB
T664 57-66 Localization denotes Secretion
T665 78-90 Positive_regulation denotes Upregulation
T666 118-128 Positive_regulation denotes Activation
T667 45-52 Positive_regulation denotes Induces
T668 45-52 Positive_regulation denotes Induces
R536 T662 T664 themeOf TNF,Secretion
R537 T663 T666 themeOf NF-κB,Activation
R538 T664 T665 themeOf Secretion,Upregulation
R539 T664 T667 themeOf Secretion,Induces
R540 T665 T668 themeOf Upregulation,Induces
R541 T666 T667 causeOf Activation,Induces
R542 T666 T668 causeOf Activation,Induces

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T60 104-111 Positive_regulation denotes through
T53 45-52 Positive_regulation denotes Induces
T54 45-52 Positive_regulation denotes Induces
T55 53-56 Protein denotes TNF
T56 57-66 Localization denotes Secretion
T57 71-77 Protein denotes ICAM-1
T58 78-90 Positive_regulation denotes Upregulation
T59 104-111 Positive_regulation denotes through
R552 T56 T53 themeOf Secretion,Induces
R553 T57 T58 themeOf ICAM-1,Upregulation
R554 T58 T54 themeOf Upregulation,Induces
R549 T53 T59 themeOf Induces,through
R550 T54 T60 themeOf Induces,through
R551 T55 T56 themeOf TNF,Secretion

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T318 53-56 P01375 denotes TNF
T319 71-77 P05362 denotes ICAM-1

test2

Id Subject Object Predicate Lexical cue
T36 45-52 Positive_regulation denotes Induces
T37 53-56 Protein denotes TNF
T38 57-66 Localization denotes Secretion
T39 71-77 Protein denotes ICAM-1
T40 78-90 Positive_regulation denotes Upregulation
R13 T37 T38 themeOf TNF,Secretion
R14 T38 T36 themeOf Secretion,Induces
R15 T39 T40 themeOf ICAM-1,Upregulation
R16 T40 T36 themeOf Upregulation,Induces