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PMC:2791889 / 8058-8377 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3560 6-9 P01730 denotes CD4
T3561 145-150 P29460 denotes IL-12
T3562 145-150 P29459 denotes IL-12
T3563 169-174 P22301 denotes IL-10

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T2937 6-9 Protein denotes CD4
T2938 32-63 Protein denotes recombination-activating gene 1
T2939 65-69 Protein denotes Rag1
T2940 71-80 Negative_regulation denotes deficient
T2941 145-150 Protein denotes IL-12
T2942 157-165 Positive_regulation denotes resulted
T2943 169-174 Protein denotes IL-10
T2944 175-185 Gene_expression denotes expression
T2945 237-246 Positive_regulation denotes dependent true
R2180 T2938 T2940 themeOf recombination-activating gene 1,deficient
R2181 T2939 T2938 equivalentTo Rag1,recombination-activating gene 1
R2182 T2941 T2942 causeOf IL-12,resulted
R2183 T2943 T2944 themeOf IL-10,expression
R2184 T2944 T2942 themeOf expression,resulted
R2185 T2944 T2945 themeOf expression,dependent

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3346 0-5 JJ denotes Naive
T3347 6-10 JJ denotes CD4+
T3348 11-18 NN denotes T cells
T3349 19-23 IN denotes from
T3350 24-56 JJ denotes DO11.10/recombination-activating
T3351 57-61 NN denotes gene
T3352 62-63 CD denotes 1
T3353 64-65 -LRB- denotes (
T3354 65-69 NN denotes Rag1
T3355 69-70 -RRB- denotes )
T3356 70-80 JJ denotes -deficient
T3357 81-88 NN denotes animals
T3358 88-89 -COMMA- denotes ,
T3359 90-98 VB denotes cultured
T3360 99-103 IN denotes with
T3361 104-108 JJ denotes high
T3362 109-114 NN denotes doses
T3363 115-117 IN denotes of
T3364 118-125 NN denotes antigen
T3365 126-128 IN denotes in
T3366 129-132 DT denotes the
T3367 133-141 NN denotes presence
T3368 142-144 IN denotes of
T3369 145-150 NN denotes IL-12
T3370 150-151 -COMMA- denotes ,
T3371 152-156 RB denotes also
T3372 157-165 VB denotes resulted
T3373 166-168 IN denotes in
T3374 169-174 NN denotes IL-10
T3375 175-185 NN denotes expression
T3376 186-188 IN denotes by
T3377 189-192 NN denotes Th1
T3378 193-198 NN denotes cells
T3379 198-199 -COMMA- denotes ,
T3380 200-207 VB denotes showing
T3381 208-212 IN denotes that
T3382 213-217 DT denotes this
T3383 218-228 NN denotes expression
T3384 229-232 VB denotes was
T3385 233-236 RB denotes not
T3386 237-246 JJ denotes dependent
T3387 247-249 IN denotes on
T3388 250-253 DT denotes the
T3389 254-262 NN denotes presence
T3390 263-265 IN denotes of
T3391 266-274 NN denotes effector
T3392 275-277 CC denotes or
T3393 278-284 NN denotes memory
T3394 285-292 NN denotes T cells
T3395 293-295 CC denotes or
T3396 296-300 NN denotes Treg
T3397 301-306 NN denotes cells
T3398 307-308 -LRB- denotes (
T3399 308-317 NN denotes Figure S2
T3400 317-318 -RRB- denotes )
R2563 T3348 T3346 arg1Of T cells,Naive
R2564 T3348 T3347 arg1Of T cells,CD4+
R2565 T3348 T3349 arg1Of T cells,from
R2566 T3348 T3358 arg1Of T cells,","
R2567 T3348 T3359 arg2Of T cells,cultured
R2568 T3348 T3372 arg1Of T cells,resulted
R2569 T3354 T3353 arg2Of Rag1,(
R2570 T3355 T3353 arg3Of ),(
R2571 T3357 T3349 arg2Of animals,from
R2572 T3357 T3350 arg1Of animals,DO11.10/recombination-activating
R2573 T3357 T3351 arg1Of animals,gene
R2574 T3357 T3352 arg1Of animals,1
R2575 T3357 T3353 arg1Of animals,(
R2576 T3357 T3356 arg1Of animals,-deficient
R2577 T3359 T3360 arg1Of cultured,with
R2578 T3362 T3360 arg2Of doses,with
R2579 T3362 T3361 arg1Of doses,high
R2580 T3362 T3363 arg1Of doses,of
R2581 T3362 T3365 arg1Of doses,in
R2582 T3364 T3363 arg2Of antigen,of
R2583 T3367 T3365 arg2Of presence,in
R2584 T3367 T3366 arg1Of presence,the
R2585 T3367 T3368 arg1Of presence,of
R2586 T3369 T3368 arg2Of IL-12,of
R2587 T3372 T3370 arg1Of resulted,","
R2588 T3372 T3371 arg1Of resulted,also
R2589 T3372 T3373 arg1Of resulted,in
R2590 T3372 T3379 arg1Of resulted,","
R2591 T3372 T3380 modOf resulted,showing
R2592 T3375 T3373 arg2Of expression,in
R2593 T3375 T3374 arg1Of expression,IL-10
R2594 T3375 T3376 arg1Of expression,by
R2595 T3378 T3376 arg2Of cells,by
R2596 T3378 T3377 arg1Of cells,Th1
R2597 T3383 T3382 arg1Of expression,this
R2598 T3383 T3384 arg1Of expression,was
R2599 T3383 T3386 arg1Of expression,dependent
R2600 T3384 T3380 arg2Of was,showing
R2601 T3384 T3381 arg1Of was,that
R2602 T3384 T3385 arg1Of was,not
R2603 T3386 T3384 arg2Of dependent,was
R2604 T3386 T3387 arg1Of dependent,on
R2605 T3389 T3387 arg2Of presence,on
R2606 T3389 T3388 arg1Of presence,the
R2607 T3389 T3390 arg1Of presence,of
R2608 T3391 T3392 arg1Of effector,or
R2609 T3393 T3392 arg2Of memory,or
R2610 T3394 T3391 arg1Of T cells,effector
R2611 T3394 T3393 arg1Of T cells,memory
R2612 T3394 T3395 arg1Of T cells,or
R2613 T3395 T3390 arg2Of or,of
R2614 T3397 T3395 arg2Of cells,or
R2615 T3397 T3396 arg1Of cells,Treg
R2616 T3397 T3398 arg1Of cells,(
R2617 T3399 T3398 arg2Of Figure S2,(
R2618 T3400 T3398 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T3502 213-228 Anaphor denotes this expression
T3503 175-185 Antecedent denotes expression
R2723 T3502 T3503 boundBy this expression,expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3972 0-5 JJ denotes Naive
T3973 6-9 NNP denotes CD4
T3974 9-10 CD denotes +
T3975 11-12 NNP denotes T
T3976 13-18 NNS denotes cells
T3977 19-23 IN denotes from
T3978 24-28 NNP denotes DO11
T3979 28-31 CD denotes .10
T3980 31-32 CD denotes /
T3981 32-56 JJ denotes recombination-activating
T3982 57-61 NN denotes gene
T3983 62-63 CD denotes 1
T3984 64-65 -LRB- denotes (
T3985 65-69 NN denotes Rag1
T3986 69-70 -RRB- denotes )
T3987 70-71 : denotes -
T3988 71-80 NN denotes deficient
T3989 81-88 NNS denotes animals
T3990 88-89 , denotes ,
T3991 90-98 VBN denotes cultured
T3992 99-103 IN denotes with
T3993 104-108 JJ denotes high
T3994 109-114 NNS denotes doses
T3995 115-117 IN denotes of
T3996 118-125 NN denotes antigen
T3997 126-128 IN denotes in
T3998 129-132 DT denotes the
T3999 133-141 NN denotes presence
T4000 142-144 IN denotes of
T4001 145-150 NN denotes IL-12
T4002 150-151 , denotes ,
T4003 152-156 RB denotes also
T4004 157-165 VBD denotes resulted
T4005 166-168 IN denotes in
T4006 169-174 NNP denotes IL-10
T4007 175-185 NN denotes expression
T4008 186-188 IN denotes by
T4009 189-192 JJ denotes Th1
T4010 193-198 NNS denotes cells
T4011 198-199 , denotes ,
T4012 200-207 VBG denotes showing
T4013 208-212 IN denotes that
T4014 213-217 DT denotes this
T4015 218-228 NN denotes expression
T4016 229-232 VBD denotes was
T4017 233-236 RB denotes not
T4018 237-246 JJ denotes dependent
T4019 247-249 IN denotes on
T4020 250-253 DT denotes the
T4021 254-262 NN denotes presence
T4022 263-265 IN denotes of
T4023 266-274 NN denotes effector
T4024 275-277 CC denotes or
T4025 278-284 NN denotes memory
T4026 285-286 NNP denotes T
T4027 287-292 NNS denotes cells
T4028 293-295 CC denotes or
T4029 296-300 NNP denotes Treg
T4030 301-306 NNS denotes cells
T4031 307-308 -LRB- denotes (
T4032 308-314 NN denotes Figure
T4033 315-317 CD denotes S2
T4034 317-318 -RRB- denotes )
T4035 318-319 . denotes .
R3077 T3972 T3976 amod Naive,cells
R3078 T3973 T3976 compound CD4,cells
R3080 T3974 T3976 nummod +,cells
R3081 T3975 T3976 compound T,cells
R3083 T3976 T4004 nsubj cells,resulted
R3084 T3977 T3976 prep from,cells
R3087 T3978 T3977 pobj DO11,from
R3092 T3979 T3978 nummod .10,DO11
R3095 T3980 T3989 nummod /,animals
R3100 T3981 T3982 compound recombination-activating,gene
R3104 T3982 T3988 npadvmod gene,deficient
R3108 T3983 T3982 nummod 1,gene
R3111 T3984 T3985 punct (,Rag1
R3116 T3985 T3982 appos Rag1,gene
R3119 T3986 T3985 punct ),Rag1
R3123 T3987 T3988 punct -,deficient
R3125 T3988 T3989 amod deficient,animals
R3126 T3989 T3976 conj animals,cells
R3129 T3990 T3989 punct ",",animals
R3133 T3991 T3976 acl cultured,cells
R3139 T3992 T3991 prep with,cultured
R3142 T3993 T3994 amod high,doses
R3146 T3994 T3992 pobj doses,with
R3147 T3995 T3994 prep of,doses
R3148 T3996 T3995 pobj antigen,of
R3149 T3997 T3991 prep in,cultured
R3150 T3998 T3999 det the,presence
R3153 T3999 T3997 pobj presence,in
R3157 T4000 T3999 prep of,presence
R3162 T4001 T4000 pobj IL-12,of
R3165 T4002 T3976 punct ",",cells
R3167 T4003 T4004 advmod also,resulted
R3171 T4004 T4004 ROOT resulted,resulted
R3175 T4005 T4004 prep in,resulted
R3179 T4006 T4007 compound IL-10,expression
R3183 T4007 T4005 pobj expression,in
R3188 T4008 T4004 prep by,resulted
R3191 T4009 T4010 amod Th1,cells
R3195 T4010 T4008 pobj cells,by
R3199 T4011 T4004 punct ",",resulted
R3202 T4012 T4004 advcl showing,resulted
R3205 T4013 T4016 mark that,was
R3210 T4014 T4015 det this,expression
R3214 T4015 T4016 nsubj expression,was
R3218 T4016 T4012 ccomp was,showing
R3221 T4017 T4018 neg not,dependent
R3226 T4018 T4016 acomp dependent,was
R3228 T4019 T4018 prep on,dependent
R3229 T4020 T4021 det the,presence
R3230 T4021 T4019 pobj presence,on
R3231 T4022 T4021 prep of,presence
R3232 T4023 T4022 pobj effector,of
R3233 T4024 T4023 cc or,effector
R3234 T4025 T4027 compound memory,cells
R3235 T4026 T4027 compound T,cells
R3236 T4027 T4023 conj cells,effector
R3237 T4028 T4027 cc or,cells
R3238 T4029 T4030 compound Treg,cells
R3239 T4030 T4027 conj cells,cells
R3240 T4031 T4032 punct (,Figure
R3241 T4032 T4021 appos Figure,presence
R3242 T4033 T4032 nummod S2,Figure
R3243 T4034 T4032 punct ),Figure
R3244 T4035 T4004 punct .,resulted

GO-BP

Id Subject Object Predicate Lexical cue
T4177 278-284 http://purl.obolibrary.org/obo/GO_0007613 denotes memory

GO-MF

Id Subject Object Predicate Lexical cue
T4187 145-150 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12
T4204 169-174 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

GO-CC

Id Subject Object Predicate Lexical cue
T4230 13-18 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4231 193-198 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4232 287-292 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4233 301-306 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2974 0-319 Sentence denotes Naive CD4+ T cells from DO11.10/recombination-activating gene 1 (Rag1)-deficient animals, cultured with high doses of antigen in the presence of IL-12, also resulted in IL-10 expression by Th1 cells, showing that this expression was not dependent on the presence of effector or memory T cells or Treg cells (Figure S2).
T42 0-319 Sentence denotes Naive CD4+ T cells from DO11.10/recombination-activating gene 1 (Rag1)-deficient animals, cultured with high doses of antigen in the presence of IL-12, also resulted in IL-10 expression by Th1 cells, showing that this expression was not dependent on the presence of effector or memory T cells or Treg cells (Figure S2).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T4525 6-9 Protein denotes CD4
T4526 32-63 Protein denotes recombination-activating gene 1
T4527 65-69 Protein denotes Rag1
T4528 71-80 Negative_regulation denotes deficient
T4529 145-150 Protein denotes IL-12
T4530 157-165 Positive_regulation denotes resulted
T4531 169-174 Protein denotes IL-10
T4532 175-185 Gene_expression denotes expression
T4533 237-246 Positive_regulation denotes dependent true
R3435 T4526 T4528 themeOf recombination-activating gene 1,deficient
R3437 T4527 T4526 equivalentTo Rag1,recombination-activating gene 1
R3438 T4529 T4530 causeOf IL-12,resulted
R3439 T4531 T4532 themeOf IL-10,expression
R3441 T4532 T4530 themeOf expression,resulted
R3442 T4532 T4533 themeOf expression,dependent

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4607 6-10 Protein denotes CD4+
T4608 57-63 Protein denotes gene 1
T4609 65-69 Protein denotes Rag1
T4610 145-150 Protein denotes IL-12
T4611 169-174 Protein denotes IL-10
T4612 70-80 Negative_regulation denotes -deficient
T4613 70-80 Negative_regulation denotes -deficient
T4614 175-185 Gene_expression denotes expression
T4615 157-165 Positive_regulation denotes resulted
R3514 T4608 T4612 themeOf gene 1,-deficient
R3515 T4609 T4613 themeOf Rag1,-deficient
R3516 T4611 T4614 themeOf IL-10,expression
R3518 T4614 T4615 themeOf expression,resulted

test2

Id Subject Object Predicate Lexical cue
T2835 6-9 Protein denotes CD4
T2836 32-63 Protein denotes recombination-activating gene 1
T2837 65-69 Protein denotes Rag1
T2838 71-80 Negative_regulation denotes deficient
T2839 145-150 Protein denotes IL-12
T2840 157-165 Positive_regulation denotes resulted
T2841 169-174 Protein denotes IL-10
T2842 175-185 Gene_expression denotes expression
T2843 218-228 Gene_expression denotes expression
T2844 237-246 Regulation denotes dependent
R2121 T2836 T2838 themeOf recombination-activating gene 1,deficient
R2122 T2837 T2836 equivalentTo Rag1,recombination-activating gene 1
R2123 T2841 T2842 themeOf IL-10,expression
R2124 T2842 T2840 themeOf expression,resulted
R2125 T2842 T2844 themeOf expression,dependent
R2126 T2843 T2844 themeOf expression,dependent