
PMC:2791889 / 8058-8377
Annnotations
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3560 | 6-9 | P01730 | denotes | CD4 |
T3561 | 145-150 | P29460 | denotes | IL-12 |
T3562 | 145-150 | P29459 | denotes | IL-12 |
T3563 | 169-174 | P22301 | denotes | IL-10 |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue | Negation |
---|---|---|---|---|---|
T2937 | 6-9 | Protein | denotes | CD4 | |
T2938 | 32-63 | Protein | denotes | recombination-activating gene 1 | |
T2939 | 65-69 | Protein | denotes | Rag1 | |
T2940 | 71-80 | Negative_regulation | denotes | deficient | |
T2941 | 145-150 | Protein | denotes | IL-12 | |
T2942 | 157-165 | Positive_regulation | denotes | resulted | |
T2943 | 169-174 | Protein | denotes | IL-10 | |
T2944 | 175-185 | Gene_expression | denotes | expression | |
T2945 | 237-246 | Positive_regulation | denotes | dependent | true |
R2180 | T2938 | T2940 | themeOf | recombination-activating gene 1,deficient | |
R2181 | T2939 | T2938 | equivalentTo | Rag1,recombination-activating gene 1 | |
R2182 | T2941 | T2942 | causeOf | IL-12,resulted | |
R2183 | T2943 | T2944 | themeOf | IL-10,expression | |
R2184 | T2944 | T2942 | themeOf | expression,resulted | |
R2185 | T2944 | T2945 | themeOf | expression,dependent |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3346 | 0-5 | JJ | denotes | Naive |
T3347 | 6-10 | JJ | denotes | CD4+ |
T3348 | 11-18 | NN | denotes | T cells |
T3349 | 19-23 | IN | denotes | from |
T3350 | 24-56 | JJ | denotes | DO11.10/recombination-activating |
T3351 | 57-61 | NN | denotes | gene |
T3352 | 62-63 | CD | denotes | 1 |
T3353 | 64-65 | -LRB- | denotes | ( |
T3354 | 65-69 | NN | denotes | Rag1 |
T3355 | 69-70 | -RRB- | denotes | ) |
T3356 | 70-80 | JJ | denotes | -deficient |
T3357 | 81-88 | NN | denotes | animals |
T3358 | 88-89 | -COMMA- | denotes | , |
T3359 | 90-98 | VB | denotes | cultured |
T3360 | 99-103 | IN | denotes | with |
T3361 | 104-108 | JJ | denotes | high |
T3362 | 109-114 | NN | denotes | doses |
T3363 | 115-117 | IN | denotes | of |
T3364 | 118-125 | NN | denotes | antigen |
T3365 | 126-128 | IN | denotes | in |
T3366 | 129-132 | DT | denotes | the |
T3367 | 133-141 | NN | denotes | presence |
T3368 | 142-144 | IN | denotes | of |
T3369 | 145-150 | NN | denotes | IL-12 |
T3370 | 150-151 | -COMMA- | denotes | , |
T3371 | 152-156 | RB | denotes | also |
T3372 | 157-165 | VB | denotes | resulted |
T3373 | 166-168 | IN | denotes | in |
T3374 | 169-174 | NN | denotes | IL-10 |
T3375 | 175-185 | NN | denotes | expression |
T3376 | 186-188 | IN | denotes | by |
T3377 | 189-192 | NN | denotes | Th1 |
T3378 | 193-198 | NN | denotes | cells |
T3379 | 198-199 | -COMMA- | denotes | , |
T3380 | 200-207 | VB | denotes | showing |
T3381 | 208-212 | IN | denotes | that |
T3382 | 213-217 | DT | denotes | this |
T3383 | 218-228 | NN | denotes | expression |
T3384 | 229-232 | VB | denotes | was |
T3385 | 233-236 | RB | denotes | not |
T3386 | 237-246 | JJ | denotes | dependent |
T3387 | 247-249 | IN | denotes | on |
T3388 | 250-253 | DT | denotes | the |
T3389 | 254-262 | NN | denotes | presence |
T3390 | 263-265 | IN | denotes | of |
T3391 | 266-274 | NN | denotes | effector |
T3392 | 275-277 | CC | denotes | or |
T3393 | 278-284 | NN | denotes | memory |
T3394 | 285-292 | NN | denotes | T cells |
T3395 | 293-295 | CC | denotes | or |
T3396 | 296-300 | NN | denotes | Treg |
T3397 | 301-306 | NN | denotes | cells |
T3398 | 307-308 | -LRB- | denotes | ( |
T3399 | 308-317 | NN | denotes | Figure S2 |
T3400 | 317-318 | -RRB- | denotes | ) |
R2563 | T3348 | T3346 | arg1Of | T cells,Naive |
R2564 | T3348 | T3347 | arg1Of | T cells,CD4+ |
R2565 | T3348 | T3349 | arg1Of | T cells,from |
R2566 | T3348 | T3358 | arg1Of | T cells,"," |
R2567 | T3348 | T3359 | arg2Of | T cells,cultured |
R2568 | T3348 | T3372 | arg1Of | T cells,resulted |
R2569 | T3354 | T3353 | arg2Of | Rag1,( |
R2570 | T3355 | T3353 | arg3Of | ),( |
R2571 | T3357 | T3349 | arg2Of | animals,from |
R2572 | T3357 | T3350 | arg1Of | animals,DO11.10/recombination-activating |
R2573 | T3357 | T3351 | arg1Of | animals,gene |
R2574 | T3357 | T3352 | arg1Of | animals,1 |
R2575 | T3357 | T3353 | arg1Of | animals,( |
R2576 | T3357 | T3356 | arg1Of | animals,-deficient |
R2577 | T3359 | T3360 | arg1Of | cultured,with |
R2578 | T3362 | T3360 | arg2Of | doses,with |
R2579 | T3362 | T3361 | arg1Of | doses,high |
R2580 | T3362 | T3363 | arg1Of | doses,of |
R2581 | T3362 | T3365 | arg1Of | doses,in |
R2582 | T3364 | T3363 | arg2Of | antigen,of |
R2583 | T3367 | T3365 | arg2Of | presence,in |
R2584 | T3367 | T3366 | arg1Of | presence,the |
R2585 | T3367 | T3368 | arg1Of | presence,of |
R2586 | T3369 | T3368 | arg2Of | IL-12,of |
R2587 | T3372 | T3370 | arg1Of | resulted,"," |
R2588 | T3372 | T3371 | arg1Of | resulted,also |
R2589 | T3372 | T3373 | arg1Of | resulted,in |
R2590 | T3372 | T3379 | arg1Of | resulted,"," |
R2591 | T3372 | T3380 | modOf | resulted,showing |
R2592 | T3375 | T3373 | arg2Of | expression,in |
R2593 | T3375 | T3374 | arg1Of | expression,IL-10 |
R2594 | T3375 | T3376 | arg1Of | expression,by |
R2595 | T3378 | T3376 | arg2Of | cells,by |
R2596 | T3378 | T3377 | arg1Of | cells,Th1 |
R2597 | T3383 | T3382 | arg1Of | expression,this |
R2598 | T3383 | T3384 | arg1Of | expression,was |
R2599 | T3383 | T3386 | arg1Of | expression,dependent |
R2600 | T3384 | T3380 | arg2Of | was,showing |
R2601 | T3384 | T3381 | arg1Of | was,that |
R2602 | T3384 | T3385 | arg1Of | was,not |
R2603 | T3386 | T3384 | arg2Of | dependent,was |
R2604 | T3386 | T3387 | arg1Of | dependent,on |
R2605 | T3389 | T3387 | arg2Of | presence,on |
R2606 | T3389 | T3388 | arg1Of | presence,the |
R2607 | T3389 | T3390 | arg1Of | presence,of |
R2608 | T3391 | T3392 | arg1Of | effector,or |
R2609 | T3393 | T3392 | arg2Of | memory,or |
R2610 | T3394 | T3391 | arg1Of | T cells,effector |
R2611 | T3394 | T3393 | arg1Of | T cells,memory |
R2612 | T3394 | T3395 | arg1Of | T cells,or |
R2613 | T3395 | T3390 | arg2Of | or,of |
R2614 | T3397 | T3395 | arg2Of | cells,or |
R2615 | T3397 | T3396 | arg1Of | cells,Treg |
R2616 | T3397 | T3398 | arg1Of | cells,( |
R2617 | T3399 | T3398 | arg2Of | Figure S2,( |
R2618 | T3400 | T3398 | arg3Of | ),( |
bionlp-st-ge-2016-coref
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3502 | 213-228 | Anaphor | denotes | this expression |
T3503 | 175-185 | Antecedent | denotes | expression |
R2723 | T3502 | T3503 | boundBy | this expression,expression |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3972 | 0-5 | JJ | denotes | Naive |
T3973 | 6-9 | NNP | denotes | CD4 |
T3974 | 9-10 | CD | denotes | + |
T3975 | 11-12 | NNP | denotes | T |
T3976 | 13-18 | NNS | denotes | cells |
T3977 | 19-23 | IN | denotes | from |
T3978 | 24-28 | NNP | denotes | DO11 |
T3979 | 28-31 | CD | denotes | .10 |
T3980 | 31-32 | CD | denotes | / |
T3981 | 32-56 | JJ | denotes | recombination-activating |
T3982 | 57-61 | NN | denotes | gene |
T3983 | 62-63 | CD | denotes | 1 |
T3984 | 64-65 | -LRB- | denotes | ( |
T3985 | 65-69 | NN | denotes | Rag1 |
T3986 | 69-70 | -RRB- | denotes | ) |
T3987 | 70-71 | : | denotes | - |
T3988 | 71-80 | NN | denotes | deficient |
T3989 | 81-88 | NNS | denotes | animals |
T3990 | 88-89 | , | denotes | , |
T3991 | 90-98 | VBN | denotes | cultured |
T3992 | 99-103 | IN | denotes | with |
T3993 | 104-108 | JJ | denotes | high |
T3994 | 109-114 | NNS | denotes | doses |
T3995 | 115-117 | IN | denotes | of |
T3996 | 118-125 | NN | denotes | antigen |
T3997 | 126-128 | IN | denotes | in |
T3998 | 129-132 | DT | denotes | the |
T3999 | 133-141 | NN | denotes | presence |
T4000 | 142-144 | IN | denotes | of |
T4001 | 145-150 | NN | denotes | IL-12 |
T4002 | 150-151 | , | denotes | , |
T4003 | 152-156 | RB | denotes | also |
T4004 | 157-165 | VBD | denotes | resulted |
T4005 | 166-168 | IN | denotes | in |
T4006 | 169-174 | NNP | denotes | IL-10 |
T4007 | 175-185 | NN | denotes | expression |
T4008 | 186-188 | IN | denotes | by |
T4009 | 189-192 | JJ | denotes | Th1 |
T4010 | 193-198 | NNS | denotes | cells |
T4011 | 198-199 | , | denotes | , |
T4012 | 200-207 | VBG | denotes | showing |
T4013 | 208-212 | IN | denotes | that |
T4014 | 213-217 | DT | denotes | this |
T4015 | 218-228 | NN | denotes | expression |
T4016 | 229-232 | VBD | denotes | was |
T4017 | 233-236 | RB | denotes | not |
T4018 | 237-246 | JJ | denotes | dependent |
T4019 | 247-249 | IN | denotes | on |
T4020 | 250-253 | DT | denotes | the |
T4021 | 254-262 | NN | denotes | presence |
T4022 | 263-265 | IN | denotes | of |
T4023 | 266-274 | NN | denotes | effector |
T4024 | 275-277 | CC | denotes | or |
T4025 | 278-284 | NN | denotes | memory |
T4026 | 285-286 | NNP | denotes | T |
T4027 | 287-292 | NNS | denotes | cells |
T4028 | 293-295 | CC | denotes | or |
T4029 | 296-300 | NNP | denotes | Treg |
T4030 | 301-306 | NNS | denotes | cells |
T4031 | 307-308 | -LRB- | denotes | ( |
T4032 | 308-314 | NN | denotes | Figure |
T4033 | 315-317 | CD | denotes | S2 |
T4034 | 317-318 | -RRB- | denotes | ) |
T4035 | 318-319 | . | denotes | . |
R3077 | T3972 | T3976 | amod | Naive,cells |
R3078 | T3973 | T3976 | compound | CD4,cells |
R3080 | T3974 | T3976 | nummod | +,cells |
R3081 | T3975 | T3976 | compound | T,cells |
R3083 | T3976 | T4004 | nsubj | cells,resulted |
R3084 | T3977 | T3976 | prep | from,cells |
R3087 | T3978 | T3977 | pobj | DO11,from |
R3092 | T3979 | T3978 | nummod | .10,DO11 |
R3095 | T3980 | T3989 | nummod | /,animals |
R3100 | T3981 | T3982 | compound | recombination-activating,gene |
R3104 | T3982 | T3988 | npadvmod | gene,deficient |
R3108 | T3983 | T3982 | nummod | 1,gene |
R3111 | T3984 | T3985 | punct | (,Rag1 |
R3116 | T3985 | T3982 | appos | Rag1,gene |
R3119 | T3986 | T3985 | punct | ),Rag1 |
R3123 | T3987 | T3988 | punct | -,deficient |
R3125 | T3988 | T3989 | amod | deficient,animals |
R3126 | T3989 | T3976 | conj | animals,cells |
R3129 | T3990 | T3989 | punct | ",",animals |
R3133 | T3991 | T3976 | acl | cultured,cells |
R3139 | T3992 | T3991 | prep | with,cultured |
R3142 | T3993 | T3994 | amod | high,doses |
R3146 | T3994 | T3992 | pobj | doses,with |
R3147 | T3995 | T3994 | prep | of,doses |
R3148 | T3996 | T3995 | pobj | antigen,of |
R3149 | T3997 | T3991 | prep | in,cultured |
R3150 | T3998 | T3999 | det | the,presence |
R3153 | T3999 | T3997 | pobj | presence,in |
R3157 | T4000 | T3999 | prep | of,presence |
R3162 | T4001 | T4000 | pobj | IL-12,of |
R3165 | T4002 | T3976 | punct | ",",cells |
R3167 | T4003 | T4004 | advmod | also,resulted |
R3171 | T4004 | T4004 | ROOT | resulted,resulted |
R3175 | T4005 | T4004 | prep | in,resulted |
R3179 | T4006 | T4007 | compound | IL-10,expression |
R3183 | T4007 | T4005 | pobj | expression,in |
R3188 | T4008 | T4004 | prep | by,resulted |
R3191 | T4009 | T4010 | amod | Th1,cells |
R3195 | T4010 | T4008 | pobj | cells,by |
R3199 | T4011 | T4004 | punct | ",",resulted |
R3202 | T4012 | T4004 | advcl | showing,resulted |
R3205 | T4013 | T4016 | mark | that,was |
R3210 | T4014 | T4015 | det | this,expression |
R3214 | T4015 | T4016 | nsubj | expression,was |
R3218 | T4016 | T4012 | ccomp | was,showing |
R3221 | T4017 | T4018 | neg | not,dependent |
R3226 | T4018 | T4016 | acomp | dependent,was |
R3228 | T4019 | T4018 | prep | on,dependent |
R3229 | T4020 | T4021 | det | the,presence |
R3230 | T4021 | T4019 | pobj | presence,on |
R3231 | T4022 | T4021 | prep | of,presence |
R3232 | T4023 | T4022 | pobj | effector,of |
R3233 | T4024 | T4023 | cc | or,effector |
R3234 | T4025 | T4027 | compound | memory,cells |
R3235 | T4026 | T4027 | compound | T,cells |
R3236 | T4027 | T4023 | conj | cells,effector |
R3237 | T4028 | T4027 | cc | or,cells |
R3238 | T4029 | T4030 | compound | Treg,cells |
R3239 | T4030 | T4027 | conj | cells,cells |
R3240 | T4031 | T4032 | punct | (,Figure |
R3241 | T4032 | T4021 | appos | Figure,presence |
R3242 | T4033 | T4032 | nummod | S2,Figure |
R3243 | T4034 | T4032 | punct | ),Figure |
R3244 | T4035 | T4004 | punct | .,resulted |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4177 | 278-284 | http://purl.obolibrary.org/obo/GO_0007613 | denotes | memory |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4187 | 145-150 | http://purl.obolibrary.org/obo/GO_0005143 | denotes | IL-12 |
T4204 | 169-174 | http://purl.obolibrary.org/obo/GO_0005141 | denotes | IL-10 |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4230 | 13-18 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T4231 | 193-198 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T4232 | 287-292 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T4233 | 301-306 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2974 | 0-319 | Sentence | denotes | Naive CD4+ T cells from DO11.10/recombination-activating gene 1 (Rag1)-deficient animals, cultured with high doses of antigen in the presence of IL-12, also resulted in IL-10 expression by Th1 cells, showing that this expression was not dependent on the presence of effector or memory T cells or Treg cells (Figure S2). |
T42 | 0-319 | Sentence | denotes | Naive CD4+ T cells from DO11.10/recombination-activating gene 1 (Rag1)-deficient animals, cultured with high doses of antigen in the presence of IL-12, also resulted in IL-10 expression by Th1 cells, showing that this expression was not dependent on the presence of effector or memory T cells or Treg cells (Figure S2). |
events-check-again
Id | Subject | Object | Predicate | Lexical cue | Negation |
---|---|---|---|---|---|
T4525 | 6-9 | Protein | denotes | CD4 | |
T4526 | 32-63 | Protein | denotes | recombination-activating gene 1 | |
T4527 | 65-69 | Protein | denotes | Rag1 | |
T4528 | 71-80 | Negative_regulation | denotes | deficient | |
T4529 | 145-150 | Protein | denotes | IL-12 | |
T4530 | 157-165 | Positive_regulation | denotes | resulted | |
T4531 | 169-174 | Protein | denotes | IL-10 | |
T4532 | 175-185 | Gene_expression | denotes | expression | |
T4533 | 237-246 | Positive_regulation | denotes | dependent | true |
R3435 | T4526 | T4528 | themeOf | recombination-activating gene 1,deficient | |
R3437 | T4527 | T4526 | equivalentTo | Rag1,recombination-activating gene 1 | |
R3438 | T4529 | T4530 | causeOf | IL-12,resulted | |
R3439 | T4531 | T4532 | themeOf | IL-10,expression | |
R3441 | T4532 | T4530 | themeOf | expression,resulted | |
R3442 | T4532 | T4533 | themeOf | expression,dependent |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4607 | 6-10 | Protein | denotes | CD4+ |
T4608 | 57-63 | Protein | denotes | gene 1 |
T4609 | 65-69 | Protein | denotes | Rag1 |
T4610 | 145-150 | Protein | denotes | IL-12 |
T4611 | 169-174 | Protein | denotes | IL-10 |
T4612 | 70-80 | Negative_regulation | denotes | -deficient |
T4613 | 70-80 | Negative_regulation | denotes | -deficient |
T4614 | 175-185 | Gene_expression | denotes | expression |
T4615 | 157-165 | Positive_regulation | denotes | resulted |
R3514 | T4608 | T4612 | themeOf | gene 1,-deficient |
R3515 | T4609 | T4613 | themeOf | Rag1,-deficient |
R3516 | T4611 | T4614 | themeOf | IL-10,expression |
R3518 | T4614 | T4615 | themeOf | expression,resulted |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2835 | 6-9 | Protein | denotes | CD4 |
T2836 | 32-63 | Protein | denotes | recombination-activating gene 1 |
T2837 | 65-69 | Protein | denotes | Rag1 |
T2838 | 71-80 | Negative_regulation | denotes | deficient |
T2839 | 145-150 | Protein | denotes | IL-12 |
T2840 | 157-165 | Positive_regulation | denotes | resulted |
T2841 | 169-174 | Protein | denotes | IL-10 |
T2842 | 175-185 | Gene_expression | denotes | expression |
T2843 | 218-228 | Gene_expression | denotes | expression |
T2844 | 237-246 | Regulation | denotes | dependent |
R2121 | T2836 | T2838 | themeOf | recombination-activating gene 1,deficient |
R2122 | T2837 | T2836 | equivalentTo | Rag1,recombination-activating gene 1 |
R2123 | T2841 | T2842 | themeOf | IL-10,expression |
R2124 | T2842 | T2840 | themeOf | expression,resulted |
R2125 | T2842 | T2844 | themeOf | expression,dependent |
R2126 | T2843 | T2844 | themeOf | expression,dependent |