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PMC:2791889 / 6564-6835 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3519 17-20 P01730 denotes CD4
T3520 77-80 P04234 denotes CD3
T3521 77-80 P07766 denotes CD3
T3522 77-80 P20963 denotes CD3
T3523 77-80 P09693 denotes CD3
T3524 90-94 P10747 denotes CD28
T3525 125-130 P29460 denotes IL-12
T3526 125-130 P29459 denotes IL-12
T3527 143-148 P01579 denotes IFN-γ
T3528 203-208 P22301 denotes IL-10
T3529 253-257 P05112 denotes IL-4

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T2880 17-20 Protein denotes CD4
T2881 77-80 Protein denotes CD3
T2882 90-94 Protein denotes CD28
T2883 125-130 Protein denotes IL-12
T2884 131-139 Positive_regulation denotes resulted
T2885 131-139 Positive_regulation denotes resulted
T2886 143-148 Protein denotes IFN-γ
T2887 149-158 Gene_expression denotes producing
T2888 192-202 Gene_expression denotes coproduced
T2889 203-208 Protein denotes IL-10
T2890 253-257 Protein denotes IL-4
R2146 T2883 T2885 causeOf IL-12,resulted
R2147 T2883 T2884 causeOf IL-12,resulted
R2148 T2886 T2887 themeOf IFN-γ,producing
R2149 T2887 T2885 themeOf producing,resulted
R2150 T2888 T2884 themeOf coproduced,resulted
R2151 T2889 T2888 themeOf IL-10,coproduced

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3093 0-7 NN denotes Culture
T3094 8-10 IN denotes of
T3095 11-16 JJ denotes naive
T3096 17-21 JJ denotes CD4+
T3097 22-29 NN denotes T cells
T3098 30-32 IN denotes in
T3099 33-35 DT denotes an
T3100 36-44 JJ denotes APC-free
T3101 45-51 NN denotes system
T3102 52-54 IN denotes by
T3103 55-66 NN denotes stimulation
T3104 67-71 IN denotes with
T3105 72-80 JJ denotes anti-CD3
T3106 81-84 CC denotes and
T3107 85-94 JJ denotes anti-CD28
T3108 95-105 NN denotes antibodies
T3109 106-108 IN denotes in
T3110 109-112 DT denotes the
T3111 113-121 NN denotes presence
T3112 122-124 IN denotes of
T3113 125-130 NN denotes IL-12
T3114 131-139 VB denotes resulted
T3115 140-142 IN denotes in
T3116 143-158 JJ denotes IFN-γ-producing
T3117 159-162 NN denotes Th1
T3118 163-168 NN denotes cells
T3119 168-169 -COMMA- denotes ,
T3120 170-171 DT denotes a
T3121 172-182 NN denotes proportion
T3122 183-185 IN denotes of
T3123 186-191 WDT denotes which
T3124 192-202 VB denotes coproduced
T3125 203-208 NN denotes IL-10
T3126 208-209 -COMMA- denotes ,
T3127 210-212 IN denotes as
T3128 213-216 VB denotes did
T3129 217-220 NN denotes Th2
T3130 221-226 NN denotes cells
T3131 227-236 VB denotes resulting
T3132 237-241 IN denotes from
T3133 242-249 NN denotes culture
T3134 250-252 IN denotes in
T3135 253-257 NN denotes IL-4
T3136 258-259 -LRB- denotes (
T3137 259-269 NN denotes Figure S1B
T3138 269-270 -RRB- denotes )
R2311 T3093 T3094 arg1Of Culture,of
R2312 T3093 T3098 arg1Of Culture,in
R2313 T3093 T3114 arg1Of Culture,resulted
R2314 T3097 T3094 arg2Of T cells,of
R2315 T3097 T3095 arg1Of T cells,naive
R2316 T3097 T3096 arg1Of T cells,CD4+
R2317 T3101 T3098 arg2Of system,in
R2318 T3101 T3099 arg1Of system,an
R2319 T3101 T3100 arg1Of system,APC-free
R2320 T3101 T3102 arg1Of system,by
R2321 T3103 T3102 arg2Of stimulation,by
R2322 T3103 T3104 arg1Of stimulation,with
R2323 T3105 T3106 arg1Of anti-CD3,and
R2324 T3107 T3106 arg2Of anti-CD28,and
R2325 T3108 T3104 arg2Of antibodies,with
R2326 T3108 T3105 arg1Of antibodies,anti-CD3
R2327 T3108 T3107 arg1Of antibodies,anti-CD28
R2328 T3108 T3109 arg1Of antibodies,in
R2329 T3111 T3109 arg2Of presence,in
R2330 T3111 T3110 arg1Of presence,the
R2331 T3111 T3112 arg1Of presence,of
R2332 T3113 T3112 arg2Of IL-12,of
R2333 T3114 T3115 arg1Of resulted,in
R2334 T3118 T3115 arg2Of cells,in
R2335 T3118 T3116 arg1Of cells,IFN-γ-producing
R2336 T3118 T3117 arg1Of cells,Th1
R2337 T3118 T3122 arg2Of cells,of
R2338 T3118 T3123 arg1Of cells,which
R2339 T3121 T3120 arg1Of proportion,a
R2340 T3121 T3122 arg1Of proportion,of
R2341 T3121 T3124 arg1Of proportion,coproduced
R2342 T3124 T3119 arg1Of coproduced,","
R2343 T3124 T3126 arg1Of coproduced,","
R2344 T3124 T3127 arg1Of coproduced,as
R2345 T3125 T3124 arg2Of IL-10,coproduced
R2346 T3128 T3127 arg2Of did,as
R2347 T3130 T3128 arg1Of cells,did
R2348 T3130 T3129 arg1Of cells,Th2
R2349 T3130 T3131 arg1Of cells,resulting
R2350 T3131 T3132 arg1Of resulting,from
R2351 T3131 T3134 arg1Of resulting,in
R2352 T3133 T3132 arg2Of culture,from
R2353 T3135 T3134 arg2Of IL-4,in
R2354 T3135 T3136 arg1Of IL-4,(
R2355 T3137 T3136 arg2Of Figure S1B,(
R2356 T3138 T3136 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3699 0-7 NNP denotes Culture
T3700 8-10 IN denotes of
T3701 11-16 JJ denotes naive
T3702 17-20 NNP denotes CD4
T3703 20-21 CD denotes +
T3704 22-23 NNP denotes T
T3705 24-29 NNS denotes cells
T3706 30-32 IN denotes in
T3707 33-35 DT denotes an
T3708 36-44 JJ denotes APC-free
T3709 45-51 NN denotes system
T3710 52-54 IN denotes by
T3711 55-66 NN denotes stimulation
T3712 67-71 IN denotes with
T3713 72-80 JJ denotes anti-CD3
T3714 81-84 CC denotes and
T3715 85-94 JJ denotes anti-CD28
T3716 95-105 NNS denotes antibodies
T3717 106-108 IN denotes in
T3718 109-112 DT denotes the
T3719 113-121 NN denotes presence
T3720 122-124 IN denotes of
T3721 125-130 NN denotes IL-12
T3722 131-139 VBD denotes resulted
T3723 140-142 IN denotes in
T3724 143-158 JJ denotes IFN-γ-producing
T3725 159-162 JJ denotes Th1
T3726 163-168 NNS denotes cells
T3727 168-169 , denotes ,
T3728 170-171 DT denotes a
T3729 172-182 NN denotes proportion
T3730 183-185 IN denotes of
T3731 186-191 WDT denotes which
T3732 192-202 VBD denotes coproduced
T3733 203-208 NNP denotes IL-10
T3734 208-209 , denotes ,
T3735 210-212 IN denotes as
T3736 213-216 VBD denotes did
T3737 217-220 CD denotes Th2
T3738 221-226 NNS denotes cells
T3739 227-236 VBG denotes resulting
T3740 237-241 IN denotes from
T3741 242-249 NN denotes culture
T3742 250-252 IN denotes in
T3743 253-257 NN denotes IL-4
T3744 258-259 -LRB- denotes (
T3745 259-265 NN denotes Figure
T3746 266-269 CD denotes S1B
T3747 269-270 -RRB- denotes )
T3748 270-271 . denotes .
R2851 T3699 T3722 nsubj Culture,resulted
R2852 T3700 T3699 prep of,Culture
R2853 T3701 T3705 amod naive,cells
R2854 T3702 T3705 compound CD4,cells
R2855 T3703 T3705 nummod +,cells
R2856 T3704 T3705 compound T,cells
R2857 T3705 T3700 pobj cells,of
R2858 T3706 T3699 prep in,Culture
R2859 T3707 T3709 det an,system
R2860 T3708 T3709 amod APC-free,system
R2861 T3709 T3706 pobj system,in
R2862 T3710 T3709 prep by,system
R2863 T3711 T3710 pobj stimulation,by
R2864 T3712 T3709 prep with,system
R2865 T3713 T3716 amod anti-CD3,antibodies
R2866 T3714 T3713 cc and,anti-CD3
R2867 T3715 T3713 conj anti-CD28,anti-CD3
R2868 T3716 T3712 pobj antibodies,with
R2869 T3717 T3699 prep in,Culture
R2870 T3718 T3719 det the,presence
R2871 T3719 T3717 pobj presence,in
R2872 T3720 T3719 prep of,presence
R2873 T3721 T3720 pobj IL-12,of
R2874 T3722 T3722 ROOT resulted,resulted
R2875 T3723 T3722 prep in,resulted
R2876 T3724 T3726 amod IFN-γ-producing,cells
R2877 T3725 T3726 amod Th1,cells
R2878 T3726 T3723 pobj cells,in
R2879 T3727 T3722 punct ",",resulted
R2880 T3728 T3729 det a,proportion
R2881 T3729 T3736 nsubj proportion,did
R2882 T3730 T3729 prep of,proportion
R2883 T3731 T3730 pobj which,of
R2884 T3732 T3733 compound coproduced,IL-10
R2885 T3733 T3729 appos IL-10,proportion
R2886 T3734 T3736 punct ",",did
R2887 T3735 T3736 mark as,did
R2888 T3736 T3722 conj did,resulted
R2889 T3737 T3738 nummod Th2,cells
R2890 T3738 T3736 dobj cells,did
R2891 T3739 T3738 acl resulting,cells
R2892 T3740 T3739 prep from,resulting
R2893 T3741 T3740 pobj culture,from
R2894 T3742 T3741 prep in,culture
R2895 T3743 T3742 pobj IL-4,in
R2896 T3744 T3745 punct (,Figure
R2897 T3745 T3741 appos Figure,culture
R2898 T3746 T3745 nummod S1B,Figure
R2899 T3747 T3736 punct ),did
R2900 T3748 T3736 punct .,did

GO-MF

Id Subject Object Predicate Lexical cue
T4179 125-130 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12
T4193 203-208 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T4209 253-257 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T4210 95-105 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies

GO-CC

Id Subject Object Predicate Lexical cue
T4218 24-29 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4219 163-168 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4220 221-226 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4239 36-39 http://purl.obolibrary.org/obo/GO_0005680 denotes APC
T4240 95-105 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T4241 95-105 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T2967 0-271 Sentence denotes Culture of naive CD4+ T cells in an APC-free system by stimulation with anti-CD3 and anti-CD28 antibodies in the presence of IL-12 resulted in IFN-γ-producing Th1 cells, a proportion of which coproduced IL-10, as did Th2 cells resulting from culture in IL-4 (Figure S1B).
T35 0-271 Sentence denotes Culture of naive CD4+ T cells in an APC-free system by stimulation with anti-CD3 and anti-CD28 antibodies in the presence of IL-12 resulted in IFN-γ-producing Th1 cells, a proportion of which coproduced IL-10, as did Th2 cells resulting from culture in IL-4 (Figure S1B).

events-check-again

Id Subject Object Predicate Lexical cue
T4468 17-20 Protein denotes CD4
T4469 77-80 Protein denotes CD3
T4470 90-94 Protein denotes CD28
T4471 125-130 Protein denotes IL-12
T4472 131-139 Positive_regulation denotes resulted
T4473 131-139 Positive_regulation denotes resulted
T4474 143-148 Protein denotes IFN-γ
T4475 149-158 Gene_expression denotes producing
T4476 192-202 Gene_expression denotes coproduced
T4477 203-208 Protein denotes IL-10
T4478 253-257 Protein denotes IL-4
R3436 T4471 T4473 causeOf IL-12,resulted
R3440 T4471 T4472 causeOf IL-12,resulted
R3444 T4474 T4475 themeOf IFN-γ,producing
R3449 T4475 T4473 themeOf producing,resulted
R3455 T4476 T4472 themeOf coproduced,resulted
R3456 T4477 T4476 themeOf IL-10,coproduced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4566 17-21 Protein denotes CD4+
T4567 72-80 Protein denotes anti-CD3
T4568 85-105 Protein denotes anti-CD28 antibodies
T4569 125-130 Protein denotes IL-12
T4570 143-148 Protein denotes IFN-γ
T4571 203-208 Protein denotes IL-10
T4572 55-66 Positive_regulation denotes stimulation
T4573 149-158 Gene_expression denotes producing
T4574 192-202 Gene_expression denotes coproduced
R3481 T4568 T4572 themeOf anti-CD28 antibodies,stimulation
R3482 T4569 T4572 causeOf IL-12,stimulation
R3484 T4570 T4573 themeOf IFN-γ,producing
R3485 T4571 T4574 themeOf IL-10,coproduced

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T2779 17-20 Protein denotes CD4
T2780 77-80 Protein denotes CD3 true
T2781 90-94 Protein denotes CD28
T2782 125-130 Protein denotes IL-12
T2783 131-139 Positive_regulation denotes resulted
T2784 143-148 Protein denotes IFN-γ
T2785 149-158 Gene_expression denotes producing
T2786 192-202 Gene_expression denotes coproduced
T2787 203-208 Protein denotes IL-10 true true
T2788 227-236 Positive_regulation denotes resulting
T2789 253-257 Protein denotes IL-4
R2088 T2782 T2783 causeOf IL-12,resulted
R2089 T2784 T2785 themeOf IFN-γ,producing
R2090 T2785 T2783 themeOf producing,resulted
R2091 T2786 T2783 themeOf coproduced,resulted
R2092 T2787 T2786 themeOf IL-10,coproduced
R2093 T2789 T2788 causeOf IL-4,resulting