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PMC:2791889 / 5303-5529 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1181 49-54 P22301 denotes IL-10
T1182 86-89 P01730 denotes CD4
T1183 108-113 P29459 denotes IL-12
T1184 108-113 P29460 denotes IL-12
T1185 122-127 Q14765 denotes STAT4
T1186 196-200 P27361 denotes ERK1
T1187 205-209 P28482 denotes ERK2

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1097 49-54 Protein denotes IL-10
T1098 55-64 Gene_expression denotes producing
T1099 86-89 Protein denotes CD4
T1100 108-113 Protein denotes IL-12
T1101 122-127 Protein denotes STAT4
T1102 196-200 Protein denotes ERK1
T1103 205-209 Protein denotes ERK2
T1104 210-225 Phosphorylation denotes phosphorylation
T1105 210-225 Phosphorylation denotes phosphorylation
R801 T1097 T1098 themeOf IL-10,producing
R802 T1102 T1105 themeOf ERK1,phosphorylation
R803 T1103 T1104 themeOf ERK2,phosphorylation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2012 0-4 RB denotes Here
T2013 4-5 , denotes ,
T2014 6-8 PRP denotes we
T2015 9-15 VBD denotes showed
T2016 16-20 IN denotes that
T2017 21-23 IN denotes in
T2018 24-29 NN denotes vitro
T2019 30-45 NN denotes differentiation
T2020 46-48 IN denotes of
T2021 49-64 JJ denotes IL-10-producing
T2022 65-68 JJ denotes Th1
T2023 69-74 NNS denotes cells
T2024 75-79 IN denotes from
T2025 80-85 JJ denotes naive
T2026 86-89 NNP denotes CD4
T2027 89-90 CD denotes +
T2028 91-92 NNP denotes T
T2029 93-98 NNS denotes cells
T2030 99-107 VBN denotes required
T2031 108-121 JJ denotes IL-12-induced
T2032 122-127 CD denotes STAT4
T2033 128-137 VBG denotes signaling
T2034 137-138 , denotes ,
T2035 139-145 JJ denotes strong
T2036 146-149 NNP denotes TCR
T2037 150-160 NN denotes activation
T2038 161-162 -LRB- denotes (
T2039 162-166 JJ denotes high
T2040 167-174 NN denotes antigen
T2041 175-179 NN denotes dose
T2042 179-180 -RRB- denotes )
T2043 180-181 , denotes ,
T2044 182-185 CC denotes and
T2045 186-195 VBD denotes sustained
T2046 196-200 CD denotes ERK1
T2047 201-204 CC denotes and
T2048 205-209 CD denotes ERK2
T2049 210-225 NN denotes phosphorylation
T2050 225-226 . denotes .
R1603 T2050 T2015 punct .,showed
R1642 T2012 T2015 advmod Here,showed
R1643 T2013 T2015 punct ",",showed
R1644 T2014 T2015 nsubj we,showed
R1645 T2015 T2015 ROOT showed,showed
R1647 T2016 T2030 mark that,required
R1648 T2017 T2030 prep in,required
R1649 T2018 T2019 amod vitro,differentiation
R1650 T2019 T2017 pobj differentiation,in
R1652 T2020 T2019 prep of,differentiation
R1653 T2021 T2023 amod IL-10-producing,cells
R1654 T2022 T2023 amod Th1,cells
R1656 T2023 T2020 pobj cells,of
R1657 T2024 T2023 prep from,cells
R1659 T2025 T2029 amod naive,cells
R1660 T2026 T2029 compound CD4,cells
R1661 T2027 T2029 nummod +,cells
R1663 T2028 T2029 compound T,cells
R1664 T2029 T2024 pobj cells,from
R1665 T2030 T2015 ccomp required,showed
R1667 T2031 T2033 npadvmod IL-12-induced,signaling
R1668 T2032 T2033 nummod STAT4,signaling
R1669 T2033 T2030 dobj signaling,required
R1670 T2034 T2033 punct ",",signaling
R1672 T2035 T2037 amod strong,activation
R1673 T2036 T2037 compound TCR,activation
R1675 T2037 T2033 appos activation,signaling
R1676 T2038 T2037 punct (,activation
R1677 T2039 T2040 amod high,antigen
R1679 T2040 T2041 compound antigen,dose
R1680 T2041 T2037 appos dose,activation
R1681 T2042 T2037 punct ),activation
R1682 T2043 T2030 punct ",",required
R1683 T2044 T2030 cc and,required
R1684 T2045 T2030 conj sustained,required
R1685 T2046 T2045 dobj ERK1,sustained
R1687 T2047 T2046 cc and,ERK1
R1688 T2048 T2049 nummod ERK2,phosphorylation
R1689 T2049 T2046 conj phosphorylation,ERK1

GO-BP

Id Subject Object Predicate Lexical cue
T2138 146-149 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T2176 196-200 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T2178 205-209 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK2
T2185 210-225 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T2159 128-137 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-MF

Id Subject Object Predicate Lexical cue
T2200 49-54 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T2207 108-113 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12
T2220 196-200 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK1
T2222 205-209 http://purl.obolibrary.org/obo/GO_0004707 denotes ERK2

GO-CC

Id Subject Object Predicate Lexical cue
T2243 146-149 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR

sentences

Id Subject Object Predicate Lexical cue
T1131 0-226 Sentence denotes Here, we showed that in vitro differentiation of IL-10-producing Th1 cells from naive CD4+ T cells required IL-12-induced STAT4 signaling, strong TCR activation (high antigen dose), and sustained ERK1 and ERK2 phosphorylation.
T27 0-226 Sentence denotes Here, we showed that in vitro differentiation of IL-10-producing Th1 cells from naive CD4+ T cells required IL-12-induced STAT4 signaling, strong TCR activation (high antigen dose), and sustained ERK1 and ERK2 phosphorylation.

events-check-again

Id Subject Object Predicate Lexical cue
T2534 49-54 Protein denotes IL-10
T2535 55-64 Gene_expression denotes producing
T2536 86-89 Protein denotes CD4
T2537 108-113 Protein denotes IL-12
T2538 122-127 Protein denotes STAT4
T2539 196-200 Protein denotes ERK1
T2540 205-209 Protein denotes ERK2
T2541 210-225 Phosphorylation denotes phosphorylation
T2542 210-225 Phosphorylation denotes phosphorylation
R1952 T2534 T2535 themeOf IL-10,producing
R1953 T2539 T2542 themeOf ERK1,phosphorylation
R1954 T2540 T2541 themeOf ERK2,phosphorylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2635 86-90 Protein denotes CD4+
T2636 122-127 Protein denotes STAT4
T2637 146-149 Protein denotes TCR
T2638 196-200 Protein denotes ERK1
T2639 205-209 Protein denotes ERK2
T2640 210-225 Phosphorylation denotes phosphorylation
T2641 210-225 Phosphorylation denotes phosphorylation
T2642 150-160 Positive_regulation denotes activation
T2643 150-160 Positive_regulation denotes activation
R1996 T2638 T2640 themeOf ERK1,phosphorylation
R1997 T2639 T2641 themeOf ERK2,phosphorylation
R1998 T2640 T2642 themeOf phosphorylation,activation
R1999 T2641 T2643 themeOf phosphorylation,activation

test2

Id Subject Object Predicate Lexical cue
T993 49-54 Protein denotes IL-10
T994 55-64 Gene_expression denotes producing
T995 86-89 Protein denotes CD4
T996 99-107 Positive_regulation denotes required
T997 108-113 Protein denotes IL-12
T998 114-121 Positive_regulation denotes induced
T999 122-127 Protein denotes STAT4
T1000 186-195 Positive_regulation denotes sustained
T1001 196-200 Protein denotes ERK1
T1002 205-209 Protein denotes ERK2
T1003 210-225 Phosphorylation denotes phosphorylation
R728 T993 T994 themeOf IL-10,producing
R729 T997 T998 causeOf IL-12,induced
R730 T998 T996 themeOf induced,required
R731 T1001 T1003 themeOf ERK1,phosphorylation
R732 T1002 T1003 themeOf ERK2,phosphorylation
R733 T1003 T1000 themeOf phosphorylation,sustained