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PMC:2791889 / 3853-4026 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1162 41-45 P05112 denotes IL-4
T1163 47-51 P05113 denotes IL-5
T1164 57-62 P35225 denotes IL-13
T1165 73-77 P05112 denotes IL-4
T1166 79-84 P42226 denotes STAT6

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1054 27-37 Gene_expression denotes expression
T1055 27-37 Gene_expression denotes expression
T1056 27-37 Gene_expression denotes expression
T1057 41-45 Protein denotes IL-4
T1058 47-51 Protein denotes IL-5
T1059 57-62 Protein denotes IL-13
T1060 64-72 Positive_regulation denotes requires
T1061 64-72 Positive_regulation denotes requires
T1062 64-72 Positive_regulation denotes requires
T1063 64-72 Positive_regulation denotes requires
T1064 64-72 Positive_regulation denotes requires
T1065 64-72 Positive_regulation denotes requires
T1066 64-72 Positive_regulation denotes requires
T1067 64-72 Positive_regulation denotes requires
T1068 64-72 Positive_regulation denotes requires
T1069 73-77 Protein denotes IL-4
T1070 79-84 Protein denotes STAT6
T1071 115-144 Protein denotes GATA binding protein (GATA)-3
R761 T1057 T1056 themeOf IL-4,expression
R762 T1057 T1066 themeOf IL-4,requires
R763 T1057 T1063 themeOf IL-4,requires
R764 T1057 T1061 themeOf IL-4,requires
R765 T1058 T1055 themeOf IL-5,expression
R766 T1058 T1062 themeOf IL-5,requires
R767 T1058 T1060 themeOf IL-5,requires
R768 T1058 T1064 themeOf IL-5,requires
R769 T1059 T1054 themeOf IL-13,expression
R770 T1059 T1068 themeOf IL-13,requires
R771 T1059 T1065 themeOf IL-13,requires
R772 T1059 T1067 themeOf IL-13,requires
R773 T1069 T1066 causeOf IL-4,requires
R774 T1069 T1062 causeOf IL-4,requires
R775 T1069 T1068 causeOf IL-4,requires
R776 T1070 T1063 causeOf STAT6,requires
R777 T1070 T1060 causeOf STAT6,requires
R778 T1070 T1065 causeOf STAT6,requires
R779 T1071 T1061 causeOf GATA binding protein (GATA)-3,requires
R780 T1071 T1064 causeOf GATA binding protein (GATA)-3,requires
R781 T1071 T1067 causeOf GATA binding protein (GATA)-3,requires

2_test

Id Subject Object Predicate Lexical cue
19646904-10898785-46582680 167-171 10898785 denotes 2000
T82500 167-171 10898785 denotes 2000

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1744 0-3 CD denotes Th2
T1745 4-8 NN denotes cell
T1746 9-20 NN denotes development
T1747 20-21 , denotes ,
T1748 22-26 IN denotes with
T1749 27-37 NN denotes expression
T1750 38-40 IN denotes of
T1751 41-45 NN denotes IL-4
T1752 45-46 , denotes ,
T1753 47-51 NN denotes IL-5
T1754 51-52 , denotes ,
T1755 53-56 CC denotes and
T1756 57-62 NNP denotes IL-13
T1757 62-63 , denotes ,
T1758 64-72 VBZ denotes requires
T1759 73-77 NN denotes IL-4
T1760 77-78 , denotes ,
T1761 79-84 NNP denotes STAT6
T1762 84-85 , denotes ,
T1763 86-89 CC denotes and
T1764 90-93 DT denotes the
T1765 94-107 NN denotes transcription
T1766 108-114 NN denotes factor
T1767 115-119 NNP denotes GATA
T1768 120-127 JJ denotes binding
T1769 128-135 NN denotes protein
T1770 136-137 -LRB- denotes (
T1771 137-141 NNP denotes GATA
T1772 141-142 -RRB- denotes )
T1773 142-144 JJ denotes -3
T1774 145-146 -LRB- denotes (
T1775 146-154 NNP denotes Glimcher
T1776 155-158 CC denotes and
T1777 159-165 NNP denotes Murphy
T1778 165-166 , denotes ,
T1779 167-171 CD denotes 2000
T1780 171-172 -RRB- denotes )
T1781 172-173 . denotes .
R1364 T1744 T1746 nummod Th2,development
R1365 T1745 T1746 compound cell,development
R1366 T1746 T1758 nsubj development,requires
R1367 T1747 T1746 punct ",",development
R1368 T1748 T1746 prep with,development
R1369 T1749 T1748 pobj expression,with
R1370 T1750 T1749 prep of,expression
R1371 T1751 T1750 pobj IL-4,of
R1372 T1752 T1751 punct ",",IL-4
R1373 T1753 T1751 conj IL-5,IL-4
R1374 T1754 T1753 punct ",",IL-5
R1375 T1755 T1753 cc and,IL-5
R1376 T1756 T1750 pobj IL-13,of
R1377 T1757 T1746 punct ",",development
R1378 T1758 T1758 ROOT requires,requires
R1379 T1759 T1758 dobj IL-4,requires
R1380 T1760 T1759 punct ",",IL-4
R1381 T1761 T1759 conj STAT6,IL-4
R1382 T1762 T1761 punct ",",STAT6
R1383 T1763 T1761 cc and,STAT6
R1384 T1764 T1766 det the,factor
R1385 T1765 T1766 compound transcription,factor
R1386 T1766 T1773 nsubj factor,-3
R1387 T1767 T1769 nmod GATA,protein
R1388 T1768 T1769 amod binding,protein
R1389 T1769 T1766 appos protein,factor
R1390 T1770 T1769 punct (,protein
R1391 T1771 T1769 appos GATA,protein
R1392 T1772 T1769 punct ),protein
R1393 T1773 T1759 appos -3,IL-4
R1394 T1774 T1775 punct (,Glimcher
R1395 T1775 T1773 appos Glimcher,-3
R1396 T1776 T1775 cc and,Glimcher
R1397 T1777 T1775 conj Murphy,Glimcher
R1398 T1778 T1777 punct ",",Murphy
R1399 T1779 T1775 appos 2000,Glimcher
R1400 T1780 T1775 punct ),Glimcher
R1401 T1781 T1758 punct .,requires

GO-BP

Id Subject Object Predicate Lexical cue
T2171 94-107 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T2163 4-20 http://purl.obolibrary.org/obo/GO_0048468 denotes cell development
T2165 9-20 http://purl.obolibrary.org/obo/GO_0032502 denotes development

GO-MF

Id Subject Object Predicate Lexical cue
T2209 41-45 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T2210 73-77 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T2212 47-51 http://purl.obolibrary.org/obo/GO_0005137 denotes IL-5
T2213 57-62 http://purl.obolibrary.org/obo/GO_0005144 denotes IL-13
T2214 120-127 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T2215 120-135 http://purl.obolibrary.org/obo/GO_0005515 denotes binding protein

GO-CC

Id Subject Object Predicate Lexical cue
T2232 4-8 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1125 0-173 Sentence denotes Th2 cell development, with expression of IL-4, IL-5, and IL-13, requires IL-4, STAT6, and the transcription factor GATA binding protein (GATA)-3 (Glimcher and Murphy, 2000).
T21 0-173 Sentence denotes Th2 cell development, with expression of IL-4, IL-5, and IL-13, requires IL-4, STAT6, and the transcription factor GATA binding protein (GATA)-3 (Glimcher and Murphy, 2000).

events-check-again

Id Subject Object Predicate Lexical cue
T2491 27-37 Gene_expression denotes expression
T2492 27-37 Gene_expression denotes expression
T2493 27-37 Gene_expression denotes expression
T2494 41-45 Protein denotes IL-4
T2495 47-51 Protein denotes IL-5
T2496 57-62 Protein denotes IL-13
T2497 64-72 Positive_regulation denotes requires
T2498 64-72 Positive_regulation denotes requires
T2499 64-72 Positive_regulation denotes requires
T2500 64-72 Positive_regulation denotes requires
T2501 64-72 Positive_regulation denotes requires
T2502 64-72 Positive_regulation denotes requires
T2503 64-72 Positive_regulation denotes requires
T2504 64-72 Positive_regulation denotes requires
T2505 64-72 Positive_regulation denotes requires
T2506 73-77 Protein denotes IL-4
T2507 79-84 Protein denotes STAT6
T2508 115-144 Protein denotes GATA binding protein (GATA)-3
R1882 T2494 T2493 themeOf IL-4,expression
R1884 T2494 T2503 themeOf IL-4,requires
R1885 T2494 T2500 themeOf IL-4,requires
R1886 T2494 T2498 themeOf IL-4,requires
R1887 T2495 T2492 themeOf IL-5,expression
R1889 T2495 T2499 themeOf IL-5,requires
R1890 T2495 T2497 themeOf IL-5,requires
R1891 T2495 T2501 themeOf IL-5,requires
R1893 T2496 T2491 themeOf IL-13,expression
R1896 T2496 T2505 themeOf IL-13,requires
R1897 T2496 T2502 themeOf IL-13,requires
R1898 T2496 T2504 themeOf IL-13,requires
R1900 T2506 T2503 causeOf IL-4,requires
R1909 T2506 T2499 causeOf IL-4,requires
R1912 T2506 T2505 causeOf IL-4,requires
R1913 T2507 T2500 causeOf STAT6,requires
R1915 T2507 T2497 causeOf STAT6,requires
R1917 T2507 T2502 causeOf STAT6,requires
R1918 T2508 T2498 causeOf GATA binding protein (GATA)-3,requires
R1920 T2508 T2501 causeOf GATA binding protein (GATA)-3,requires
R1921 T2508 T2504 causeOf GATA binding protein (GATA)-3,requires

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2587 41-45 Protein denotes IL-4
T2588 47-51 Protein denotes IL-5
T2589 73-77 Protein denotes IL-4
T2590 79-84 Protein denotes STAT6
T2591 115-135 Protein denotes GATA binding protein
T2592 137-141 Protein denotes GATA
T2593 27-37 Gene_expression denotes expression
T2594 27-37 Gene_expression denotes expression
T2595 64-72 Positive_regulation denotes requires
T2596 64-72 Positive_regulation denotes requires
R1955 T2587 T2593 themeOf IL-4,expression
R1956 T2588 T2594 themeOf IL-5,expression
R1957 T2589 T2595 causeOf IL-4,requires
R1958 T2589 T2596 causeOf IL-4,requires
R1960 T2590 T2595 themeOf STAT6,requires
R1961 T2592 T2596 themeOf GATA,requires

test2

Id Subject Object Predicate Lexical cue Speculation
T962 27-37 Gene_expression denotes expression
T963 41-45 Protein denotes IL-4
T964 47-51 Protein denotes IL-5
T965 57-62 Protein denotes IL-13 true
T966 64-72 Positive_regulation denotes requires
T967 73-77 Protein denotes IL-4
T968 79-84 Protein denotes STAT6
T969 115-144 Protein denotes GATA binding protein (GATA)-3
R704 T962 T966 themeOf expression,requires
R705 T963 T962 themeOf IL-4,expression
R706 T964 T962 themeOf IL-5,expression
R707 T964 T966 themeOf IL-5,requires
R708 T965 T962 themeOf IL-13,expression
R709 T965 T966 themeOf IL-13,requires
R710 T967 T966 causeOf IL-4,requires
R711 T968 T966 causeOf STAT6,requires
R712 T969 T966 causeOf GATA binding protein (GATA)-3,requires