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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1153 30-78 P40763 denotes signal transducer and activator of transcription
T1154 30-78 P42226 denotes signal transducer and activator of transcription
T1155 30-78 Q14765 denotes signal transducer and activator of transcription
T1156 124-129 P01579 denotes IFN-γ
T1157 166-171 Q9UL17 denotes T-bet
T1158 178-183 P29460 denotes IL-12
T1159 178-183 P29459 denotes IL-12
T1160 192-197 Q14765 denotes STAT4
T1161 311-316 P01579 denotes IFN-γ

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1038 30-87 Protein denotes signal transducer and activator of transcription (STAT)1
T1039 87-97 Positive_regulation denotes activation
T1040 99-106 Positive_regulation denotes induced
T1041 99-106 Positive_regulation denotes induced
T1042 110-120 Protein denotes type I IFN
T1043 124-129 Protein denotes IFN-γ
T1044 156-164 Protein denotes T-box 21
T1045 166-171 Protein denotes T-bet
T1046 178-183 Protein denotes IL-12
T1047 192-197 Protein denotes STAT4
T1048 231-236 Protein denotes IL-18
T1049 237-244 Positive_regulation denotes induced
T1050 245-249 Protein denotes IRAK
T1051 285-290 Positive_regulation denotes drive
T1052 300-307 Gene_expression denotes amounts
T1053 311-316 Protein denotes IFN-γ
R758 T1050 T1049 themeOf IRAK,induced
R759 T1052 T1051 themeOf amounts,drive
R760 T1053 T1052 themeOf IFN-γ,amounts
R750 T1038 T1039 themeOf signal transducer and activator of transcription (STAT)1 ,activation
R751 T1039 T1041 themeOf activation,induced
R752 T1039 T1040 themeOf activation,induced
R753 T1039 T1051 causeOf activation,drive
R754 T1042 T1041 causeOf type I IFN,induced
R755 T1043 T1040 causeOf IFN-γ,induced
R756 T1045 T1044 equivalentTo T-bet,T-box 21
R757 T1048 T1049 causeOf IL-18,induced

2_test

Id Subject Object Predicate Lexical cue
19646904-10898785-46582679 385-389 10898785 denotes 2000
T57018 385-389 10898785 denotes 2000

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1676 0-3 CD denotes Th1
T1677 4-8 NN denotes cell
T1678 9-20 NN denotes development
T1679 21-29 VBZ denotes requires
T1680 30-36 NN denotes signal
T1681 37-47 NN denotes transducer
T1682 48-51 CC denotes and
T1683 52-61 NN denotes activator
T1684 62-64 IN denotes of
T1685 65-78 NN denotes transcription
T1686 79-80 -LRB- denotes (
T1687 80-84 NNP denotes STAT
T1688 84-85 -RRB- denotes )
T1689 85-86 CD denotes 1
T1690 87-97 NN denotes activation
T1691 97-98 , denotes ,
T1692 99-106 VBN denotes induced
T1693 107-109 IN denotes by
T1694 110-114 NN denotes type
T1695 115-116 PRP denotes I
T1696 117-120 VBP denotes IFN
T1697 121-123 CC denotes or
T1698 124-129 VBP denotes IFN-γ
T1699 129-130 , denotes ,
T1700 131-134 DT denotes the
T1701 135-148 NN denotes transcription
T1702 149-155 NN denotes factor
T1703 156-161 NN denotes T-box
T1704 162-164 CD denotes 21
T1705 165-166 -LRB- denotes (
T1706 166-171 NN denotes T-bet
T1707 171-172 -RRB- denotes )
T1708 172-173 , denotes ,
T1709 174-177 CC denotes and
T1710 178-191 JJ denotes IL-12-induced
T1711 192-197 CD denotes STAT4
T1712 198-207 VBG denotes signaling
T1713 207-208 , denotes ,
T1714 209-214 WDT denotes which
T1715 215-218 MD denotes can
T1716 219-225 NN denotes couple
T1717 226-230 IN denotes with
T1718 231-244 JJ denotes IL-18-induced
T1719 245-249 NNP denotes IRAK
T1720 250-253 CC denotes and
T1721 254-259 NNP denotes NF-κB
T1722 260-273 NN denotes transcription
T1723 274-281 NNS denotes factors
T1724 282-284 TO denotes to
T1725 285-290 VB denotes drive
T1726 291-294 DT denotes the
T1727 295-299 JJ denotes high
T1728 300-307 NNS denotes amounts
T1729 308-310 IN denotes of
T1730 311-316 JJ denotes IFN-γ
T1731 317-325 VBN denotes required
T1732 326-328 TO denotes to
T1733 329-338 VB denotes eradicate
T1734 339-352 JJ denotes intracellular
T1735 353-362 NNS denotes pathogens
T1736 363-364 -LRB- denotes (
T1737 364-372 NNP denotes Glimcher
T1738 373-376 CC denotes and
T1739 377-383 NNP denotes Murphy
T1740 383-384 , denotes ,
T1741 385-389 CD denotes 2000
T1742 389-390 -RRB- denotes )
T1743 390-391 . denotes .
R1296 T1676 T1678 nummod Th1,development
R1297 T1677 T1678 compound cell,development
R1298 T1678 T1679 nsubj development,requires
R1299 T1679 T1679 ROOT requires,requires
R1300 T1680 T1681 compound signal,transducer
R1301 T1681 T1679 dobj transducer,requires
R1302 T1682 T1681 cc and,transducer
R1303 T1683 T1681 conj activator,transducer
R1304 T1684 T1683 prep of,activator
R1305 T1685 T1684 pobj transcription,of
R1306 T1686 T1685 punct (,transcription
R1307 T1687 T1685 appos STAT,transcription
R1308 T1688 T1685 punct ),transcription
R1309 T1689 T1690 nummod 1,activation
R1310 T1690 T1683 conj activation,activator
R1311 T1691 T1690 punct ",",activation
R1312 T1692 T1690 acl induced,activation
R1313 T1693 T1692 agent by,induced
R1314 T1694 T1693 pobj type,by
R1315 T1695 T1696 nsubj I,IFN
R1316 T1696 T1694 relcl IFN,type
R1317 T1697 T1696 cc or,IFN
R1318 T1698 T1696 conj IFN-γ,IFN
R1319 T1699 T1712 punct ",",signaling
R1320 T1700 T1702 det the,factor
R1321 T1701 T1702 compound transcription,factor
R1322 T1702 T1712 nsubj factor,signaling
R1323 T1703 T1702 appos T-box,factor
R1324 T1704 T1703 nummod 21,T-box
R1325 T1705 T1706 punct (,T-bet
R1326 T1706 T1703 appos T-bet,T-box
R1327 T1707 T1706 punct ),T-bet
R1328 T1708 T1703 punct ",",T-box
R1329 T1709 T1703 cc and,T-box
R1330 T1710 T1703 conj IL-12-induced,T-box
R1331 T1711 T1712 nummod STAT4,signaling
R1332 T1712 T1679 ccomp signaling,requires
R1333 T1713 T1712 punct ",",signaling
R1334 T1714 T1716 nsubj which,couple
R1335 T1715 T1716 aux can,couple
R1336 T1716 T1712 relcl couple,signaling
R1337 T1717 T1716 prep with,couple
R1338 T1718 T1719 compound IL-18-induced,IRAK
R1339 T1719 T1717 pobj IRAK,with
R1340 T1720 T1719 cc and,IRAK
R1341 T1721 T1719 conj NF-κB,IRAK
R1342 T1722 T1723 compound transcription,factors
R1343 T1723 T1716 dobj factors,couple
R1344 T1724 T1725 aux to,drive
R1345 T1725 T1723 relcl drive,factors
R1346 T1726 T1728 det the,amounts
R1347 T1727 T1728 amod high,amounts
R1348 T1728 T1725 dobj amounts,drive
R1349 T1729 T1728 prep of,amounts
R1350 T1730 T1731 amod IFN-γ,required
R1351 T1731 T1728 acl required,amounts
R1352 T1732 T1733 aux to,eradicate
R1353 T1733 T1731 xcomp eradicate,required
R1354 T1734 T1735 amod intracellular,pathogens
R1355 T1735 T1733 dobj pathogens,eradicate
R1356 T1736 T1737 punct (,Glimcher
R1357 T1737 T1716 npadvmod Glimcher,couple
R1358 T1738 T1737 cc and,Glimcher
R1359 T1739 T1737 conj Murphy,Glimcher
R1360 T1740 T1739 punct ",",Murphy
R1361 T1741 T1737 appos 2000,Glimcher
R1362 T1742 T1737 punct ),Glimcher
R1363 T1743 T1712 punct .,signaling

GO-BP

Id Subject Object Predicate Lexical cue
T2168 65-78 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T2169 135-148 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T2170 260-273 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T2156 198-207 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T2162 4-20 http://purl.obolibrary.org/obo/GO_0048468 denotes cell development
T2164 9-20 http://purl.obolibrary.org/obo/GO_0032502 denotes development

GO-MF

Id Subject Object Predicate Lexical cue
T2205 178-183 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12
T2208 231-236 http://purl.obolibrary.org/obo/GO_0045515 denotes IL-18

GO-CC

Id Subject Object Predicate Lexical cue
T2231 4-8 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2244 339-352 http://purl.obolibrary.org/obo/GO_0005622 denotes intracellular

sentences

Id Subject Object Predicate Lexical cue
T1124 0-391 Sentence denotes Th1 cell development requires signal transducer and activator of transcription (STAT)1 activation, induced by type I IFN or IFN-γ, the transcription factor T-box 21 (T-bet), and IL-12-induced STAT4 signaling, which can couple with IL-18-induced IRAK and NF-κB transcription factors to drive the high amounts of IFN-γ required to eradicate intracellular pathogens (Glimcher and Murphy, 2000).
T20 0-391 Sentence denotes Th1 cell development requires signal transducer and activator of transcription (STAT)1 activation, induced by type I IFN or IFN-γ, the transcription factor T-box 21 (T-bet), and IL-12-induced STAT4 signaling, which can couple with IL-18-induced IRAK and NF-κB transcription factors to drive the high amounts of IFN-γ required to eradicate intracellular pathogens (Glimcher and Murphy, 2000).

events-check-again

Id Subject Object Predicate Lexical cue
T2475 30-87 Protein denotes signal transducer and activator of transcription (STAT)1
T2476 87-97 Positive_regulation denotes activation
T2477 99-106 Positive_regulation denotes induced
T2478 99-106 Positive_regulation denotes induced
T2479 110-120 Protein denotes type I IFN
T2480 124-129 Protein denotes IFN-γ
T2481 156-164 Protein denotes T-box 21
T2482 166-171 Protein denotes T-bet
T2483 178-183 Protein denotes IL-12
T2484 192-197 Protein denotes STAT4
T2485 231-236 Protein denotes IL-18
T2486 237-244 Positive_regulation denotes induced
T2487 245-249 Protein denotes IRAK
T2488 285-290 Positive_regulation denotes drive
T2489 300-307 Gene_expression denotes amounts
T2490 311-316 Protein denotes IFN-γ
R1880 T2489 T2488 themeOf amounts,drive
R1881 T2490 T2489 themeOf IFN-γ,amounts
R1905 T2475 T2476 themeOf signal transducer and activator of transcription (STAT)1 ,activation
R1906 T2476 T2478 themeOf activation,induced
R1907 T2476 T2477 themeOf activation,induced
R1908 T2476 T2488 causeOf activation,drive
R1910 T2479 T2478 causeOf type I IFN,induced
R1911 T2480 T2477 causeOf IFN-γ,induced
R1914 T2482 T2481 equivalentTo T-bet,T-box 21
R1916 T2485 T2486 causeOf IL-18,induced
R1919 T2487 T2486 themeOf IRAK,induced

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2579 110-120 Protein denotes type I IFN
T2580 124-129 Protein denotes IFN-γ
T2581 192-197 Protein denotes STAT4
T2582 231-236 Protein denotes IL-18
T2583 245-249 Protein denotes IRAK
T2584 254-281 Protein denotes NF-κB transcription factors
T2585 311-316 Protein denotes IFN-γ
T2586 237-244 Positive_regulation denotes induced
R1949 T2582 T2586 causeOf IL-18,induced
R1950 T2583 T2586 themeOf IRAK,induced

test2

Id Subject Object Predicate Lexical cue Negation
T949 30-86 Protein denotes signal transducer and activator of transcription (STAT)1
T950 99-106 Positive_regulation denotes induced
T951 110-120 Protein denotes type I IFN
T952 124-129 Protein denotes IFN-γ
T953 156-164 Protein denotes T-box 21
T954 166-171 Protein denotes T-bet
T955 178-183 Protein denotes IL-12
T956 184-191 Positive_regulation denotes induced
T957 192-197 Protein denotes STAT4
T958 231-236 Protein denotes IL-18 true
T959 237-244 Positive_regulation denotes induced
T960 245-249 Protein denotes IRAK
T961 311-316 Protein denotes IFN-γ
R698 T952 T950 causeOf IFN-γ,induced
R699 T954 T953 equivalentTo T-bet,T-box 21
R700 T955 T956 causeOf IL-12,induced
R701 T956 T950 themeOf induced,induced
R702 T958 T959 causeOf IL-18,induced
R703 T960 T959 themeOf IRAK,induced