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PMC:2791889 / 30567-31803 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T18696 83-86 E2RVI8 denotes OVA
T18697 131-135 P05112 denotes IL-4
T18698 138-143 P01579 denotes IFN-γ
T18699 146-151 Q14765 denotes STAT4
T18700 158-163 P42226 denotes STAT6
T18701 910-919 E2RVI8 denotes ovalbumin
T18702 929-932 E2RVI8 denotes OVA
T18703 975-984 E2RVI8 denotes ovalbumin
T18704 1001-1004 E2RVI8 denotes OVA
T18705 1120-1123 P53778 denotes p38
T18706 1120-1123 Q15759 denotes p38
T18707 1120-1123 Q16539 denotes p38
T18708 1120-1123 O15264 denotes p38
T18709 1149-1154 P49841 denotes GSK3β

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T18672 83-86 Protein denotes OVA
T18673 124-128 Protein denotes Rag1
T18674 131-135 Protein denotes IL-4
T18675 138-143 Protein denotes IFN-γ
T18676 146-151 Protein denotes STAT4
T18677 158-163 Protein denotes STAT6
T18678 164-173 Negative_regulation denotes deficient
T18679 164-173 Negative_regulation denotes deficient
T18680 164-173 Negative_regulation denotes deficient
T18681 164-173 Negative_regulation denotes deficient
T18682 164-173 Negative_regulation denotes deficient
T18683 910-919 Protein denotes ovalbumin
T18684 929-932 Protein denotes OVA
T18685 975-984 Protein denotes ovalbumin
T18686 1093-1096 Protein denotes MEK
T18687 1097-1107 Negative_regulation denotes inhibitors
T18688 1120-1123 Protein denotes p38
T18689 1124-1133 Negative_regulation denotes inhibitor
T18690 1149-1154 Protein denotes GSK3β
T18691 1155-1164 Negative_regulation denotes inhibitor
R14799 T18673 T18681 themeOf Rag1,deficient
R14800 T18674 T18679 themeOf IL-4,deficient
R14801 T18675 T18678 themeOf IFN-γ,deficient
R14802 T18676 T18682 themeOf STAT4,deficient
R14803 T18677 T18680 themeOf STAT6,deficient
R14804 T18684 T18683 equivalentTo OVA,ovalbumin
R14805 T18686 T18687 themeOf MEK,inhibitors
R14806 T18688 T18689 themeOf p38,inhibitor
R14807 T18690 T18691 themeOf GSK3β,inhibitor

2_test

Id Subject Object Predicate Lexical cue
19646904-2125367-46582721 290-294 2125367 denotes 2006
19646904-9846495-46582721 290-294 9846495 denotes 2006
19646904-16517715-46582721 290-294 16517715 denotes 2006
19646904-7595228-46582722 859-863 7595228 denotes 2006
19646904-16517715-46582722 859-863 16517715 denotes 2006
19646904-19114668-46582722 859-863 19114668 denotes 2006
19646904-16473830-46582722 859-863 16473830 denotes 2006
T31648 290-294 2125367 denotes 2006
T44291 290-294 9846495 denotes 2006
T43212 290-294 16517715 denotes 2006
T65029 859-863 7595228 denotes 2006
T80322 859-863 16517715 denotes 2006
T12248 859-863 19114668 denotes 2006
T50653 859-863 16473830 denotes 2006

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T18710 0-4 NNP denotes Mice
T18711 4-5 , denotes ,
T18712 6-15 NNP denotes Cytokines
T18713 15-16 , denotes ,
T18714 17-27 NNP denotes Antibodies
T18715 27-28 , denotes ,
T18716 29-32 CC denotes and
T18717 33-38 JJ denotes Other
T18718 39-47 NNP denotes Reagents
T18719 48-54 NNP denotes BALB/c
T18720 55-59 NNP denotes DO11
T18721 59-62 CD denotes .10
T18722 63-67 NNS denotes mice
T18723 68-78 JJ denotes transgenic
T18724 79-82 IN denotes for
T18725 83-95 JJ denotes OVA-specific
T18726 96-99 NNP denotes TCR
T18727 100-102 NNP denotes WT
T18728 103-105 CC denotes or
T18729 106-113 VBD denotes crossed
T18730 114-118 RP denotes back
T18731 119-123 IN denotes with
T18732 124-128 NNP denotes Rag1
T18733 128-129 : denotes -
T18734 129-130 , denotes ,
T18735 131-135 NN denotes IL-4
T18736 135-136 : denotes -
T18737 136-137 , denotes ,
T18738 138-143 NNP denotes IFN-γ
T18739 143-144 : denotes -
T18740 144-145 , denotes ,
T18741 146-151 NNP denotes STAT4
T18742 151-152 : denotes -
T18743 152-153 , denotes ,
T18744 154-157 CC denotes and
T18745 158-173 JJ denotes STAT6-deficient
T18746 174-178 NNS denotes mice
T18747 179-183 VBD denotes were
T18748 184-188 VBN denotes used
T18749 189-191 IN denotes as
T18750 192-193 DT denotes a
T18751 194-200 NN denotes source
T18752 201-203 IN denotes of
T18753 204-220 JJ denotes antigen-specific
T18754 221-222 NNP denotes T
T18755 223-228 NNS denotes cells
T18756 229-230 -LRB- denotes (
T18757 230-236 NNP denotes Murphy
T18758 237-239 FW denotes et
T18759 240-243 FW denotes al.
T18760 243-244 , denotes ,
T18761 245-249 CD denotes 1990
T18762 249-250 : denotes ;
T18763 251-257 NNP denotes Ouyang
T18764 258-260 FW denotes et
T18765 261-264 FW denotes al.
T18766 264-265 , denotes ,
T18767 266-270 CD denotes 1998
T18768 270-271 : denotes ;
T18769 272-281 NNP denotes Shoemaker
T18770 282-284 FW denotes et
T18771 285-288 FW denotes al.
T18772 288-289 , denotes ,
T18773 290-294 CD denotes 2006
T18774 294-295 -RRB- denotes )
T18775 296-299 CC denotes and
T18776 300-304 VBD denotes were
T18777 305-309 VBN denotes bred
T18778 310-313 CC denotes and
T18779 314-324 VBN denotes maintained
T18780 325-330 IN denotes under
T18781 331-334 NNP denotes SPF
T18782 335-345 NNS denotes conditions
T18783 346-348 IN denotes at
T18784 349-352 DT denotes the
T18785 353-357 NNP denotes NIMR
T18786 357-358 , denotes ,
T18787 359-365 NNP denotes London
T18788 365-366 , denotes ,
T18789 367-371 NNP denotes Home
T18790 372-378 NNP denotes Office
T18791 378-379 , denotes ,
T18792 380-382 NNP denotes UK
T18793 382-383 , denotes ,
T18794 384-391 NNS denotes Animals
T18795 392-393 -LRB- denotes (
T18796 393-403 NNP denotes Scientific
T18797 404-414 NNPS denotes Procedures
T18798 414-415 -RRB- denotes )
T18799 416-419 NNP denotes Act
T18800 420-424 CD denotes 1986
T18801 425-427 CC denotes or
T18802 428-430 IN denotes at
T18803 431-434 DT denotes the
T18804 435-445 NNP denotes Washington
T18805 446-456 NNP denotes University
T18806 457-463 NNP denotes School
T18807 464-466 IN denotes of
T18808 467-475 NNP denotes Medicine
T18809 475-476 . denotes .
T18810 477-483 JJ denotes Female
T18811 484-488 NNS denotes mice
T18812 489-493 VBD denotes were
T18813 494-498 VBN denotes used
T18814 499-501 IN denotes at
T18815 502-503 CD denotes 8
T18816 504-506 CD denotes 12
T18817 507-512 NNS denotes weeks
T18818 513-516 JJ denotes old
T18819 516-517 , denotes ,
T18820 518-521 CC denotes and
T18821 522-528 NN denotes animal
T18822 529-538 NNS denotes protocols
T18823 539-543 VBD denotes were
T18824 544-552 VBN denotes approved
T18825 553-562 VBG denotes according
T18826 563-565 TO denotes to
T18827 566-569 DT denotes the
T18828 570-577 NNS denotes Animals
T18829 578-579 -LRB- denotes (
T18830 579-589 NNP denotes Scientific
T18831 590-600 NNPS denotes Procedures
T18832 600-601 -RRB- denotes )
T18833 602-605 NNP denotes Act
T18834 606-610 CD denotes 1986
T18835 610-611 , denotes ,
T18836 612-616 NNP denotes Home
T18837 617-623 NNP denotes Office
T18838 623-624 , denotes ,
T18839 625-627 NNP denotes UK
T18840 627-628 . denotes .
T18841 629-637 NNS denotes Reagents
T18842 637-638 , denotes ,
T18843 639-648 VBG denotes including
T18844 649-659 NNS denotes antibodies
T18845 660-663 IN denotes for
T18846 664-665 NNP denotes T
T18847 666-670 NN denotes cell
T18848 671-674 CC denotes and
T18849 675-677 NNP denotes DC
T18850 678-689 NN denotes preparation
T18851 689-690 , denotes ,
T18852 691-703 NN denotes purification
T18853 704-707 CC denotes and
T18854 708-715 NN denotes culture
T18855 715-716 , denotes ,
T18856 717-722 NNS denotes media
T18857 722-723 , denotes ,
T18858 724-733 NNS denotes cytokines
T18859 733-734 , denotes ,
T18860 735-738 CC denotes and
T18861 739-747 NN denotes cytokine
T18862 748-752 NNS denotes mAbs
T18863 753-757 VBP denotes have
T18864 758-762 VBN denotes been
T18865 763-772 VBN denotes described
T18866 773-774 -LRB- denotes (
T18867 774-780 NNP denotes Hosken
T18868 781-783 FW denotes et
T18869 784-787 FW denotes al.
T18870 787-788 , denotes ,
T18871 789-793 CD denotes 1995
T18872 793-794 : denotes ;
T18873 795-804 NNP denotes Shoemaker
T18874 805-807 FW denotes et
T18875 808-811 FW denotes al.
T18876 811-812 , denotes ,
T18877 813-817 CD denotes 2006
T18878 817-818 : denotes ;
T18879 819-827 NNP denotes Veldhoen
T18880 828-830 FW denotes et
T18881 831-834 FW denotes al.
T18882 834-835 , denotes ,
T18883 836-840 CD denotes 2009
T18884 840-841 : denotes ;
T18885 842-850 NNP denotes Veldhoen
T18886 851-853 FW denotes et
T18887 854-857 FW denotes al.
T18888 857-858 , denotes ,
T18889 859-863 CD denotes 2006
T18890 863-864 -RRB- denotes )
T18891 864-865 . denotes .
T18892 866-869 NNP denotes LPS
T18893 870-871 -LRB- denotes (
T18894 871-873 NNP denotes S.
T18895 874-883 NN denotes minnesota
T18896 883-884 -RRB- denotes )
T18897 885-888 VBD denotes was
T18898 889-893 IN denotes from
T18899 894-900 NNP denotes Alexis
T18900 900-901 , denotes ,
T18901 902-909 NN denotes chicken
T18902 910-919 NN denotes ovalbumin
T18903 920-927 NN denotes protein
T18904 928-929 -LRB- denotes (
T18905 929-932 NNP denotes OVA
T18906 933-940 NN denotes protein
T18907 940-941 -RRB- denotes )
T18908 942-945 VBD denotes was
T18909 946-950 IN denotes from
T18910 951-955 IN denotes from
T18911 956-969 NNP denotes Sigma-Aldrich
T18912 969-970 , denotes ,
T18913 971-974 CC denotes and
T18914 975-984 NN denotes ovalbumin
T18915 985-999 NN denotes peptide323-339
T18916 1000-1001 -LRB- denotes (
T18917 1001-1004 NNP denotes OVA
T18918 1004-1005 -RRB- denotes )
T18919 1006-1007 -LRB- denotes (
T18920 1007-1021 JJ denotes endotoxin-free
T18921 1021-1022 -RRB- denotes )
T18922 1023-1026 VBD denotes was
T18923 1027-1031 IN denotes from
T18924 1032-1044 NNP denotes Biosynthesis
T18925 1044-1045 . denotes .
T18926 1046-1051 CD denotes U0126
T18927 1052-1055 VBD denotes was
T18928 1056-1060 IN denotes from
T18929 1061-1067 NNP denotes BioMol
T18930 1068-1081 NNP denotes International
T18931 1081-1082 . denotes .
T18932 1083-1091 CD denotes PD184352
T18933 1092-1093 -LRB- denotes (
T18934 1093-1096 NNP denotes MEK
T18935 1097-1107 NNS denotes inhibitors
T18936 1107-1108 -RRB- denotes )
T18937 1108-1109 , denotes ,
T18938 1110-1118 NNP denotes SB203580
T18939 1119-1120 -LRB- denotes (
T18940 1120-1123 CD denotes p38
T18941 1124-1133 NN denotes inhibitor
T18942 1133-1134 -RRB- denotes )
T18943 1134-1135 , denotes ,
T18944 1136-1139 CC denotes and
T18945 1140-1147 NNP denotes CT99021
T18946 1148-1149 -LRB- denotes (
T18947 1149-1154 NNP denotes GSK3β
T18948 1155-1164 NN denotes inhibitor
T18949 1164-1165 -RRB- denotes )
T18950 1166-1170 VBD denotes were
T18951 1171-1175 JJ denotes kind
T18952 1176-1181 NNS denotes gifts
T18953 1182-1186 IN denotes from
T18954 1187-1189 NNP denotes P.
T18955 1190-1195 NNP denotes Cohen
T18956 1196-1199 CC denotes and
T18957 1200-1202 NNP denotes N.
T18958 1203-1209 NNP denotes Shpiro
T18959 1209-1210 , denotes ,
T18960 1211-1221 NNP denotes University
T18961 1222-1224 IN denotes of
T18962 1225-1231 NNP denotes Dundee
T18963 1231-1232 , denotes ,
T18964 1233-1235 NNP denotes UK
T18965 1235-1236 . denotes .
R14808 T18710 T18722 nmod Mice,mice
R14809 T18711 T18710 punct ",",Mice
R14810 T18712 T18722 nmod Cytokines,mice
R14811 T18713 T18712 punct ",",Cytokines
R14812 T18714 T18712 conj Antibodies,Cytokines
R14813 T18715 T18714 punct ",",Antibodies
R14814 T18716 T18714 cc and,Antibodies
R14815 T18717 T18718 amod Other,Reagents
R14816 T18718 T18722 nmod Reagents,mice
R14817 T18719 T18720 compound BALB/c,DO11
R14818 T18720 T18718 appos DO11,Reagents
R14819 T18721 T18722 nummod .10,mice
R14820 T18722 T18722 ROOT mice,mice
R14821 T18723 T18735 amod transgenic,IL-4
R14822 T18724 T18723 prep for,transgenic
R14823 T18725 T18727 compound OVA-specific,WT
R14824 T18726 T18727 compound TCR,WT
R14825 T18727 T18724 pobj WT,for
R14826 T18728 T18723 cc or,transgenic
R14827 T18729 T18723 conj crossed,transgenic
R14828 T18730 T18729 advmod back,crossed
R14829 T18731 T18729 prep with,crossed
R14830 T18732 T18731 pobj Rag1,with
R14831 T18733 T18729 punct -,crossed
R14832 T18734 T18729 punct ",",crossed
R14833 T18735 T18722 dobj IL-4,mice
R14834 T18736 T18735 punct -,IL-4
R14835 T18737 T18735 punct ",",IL-4
R14836 T18738 T18748 dep IFN-γ,used
R14837 T18739 T18748 punct -,used
R14838 T18740 T18748 punct ",",used
R14839 T18741 T18748 nsubjpass STAT4,used
R14840 T18742 T18741 punct -,STAT4
R14841 T18743 T18742 punct ",",-
R14842 T18744 T18741 cc and,STAT4
R14843 T18745 T18746 amod STAT6-deficient,mice
R14844 T18746 T18741 conj mice,STAT4
R14845 T18747 T18748 auxpass were,used
R14846 T18748 T18748 ROOT used,used
R14847 T18749 T18748 prep as,used
R14848 T18750 T18751 det a,source
R14849 T18751 T18749 pobj source,as
R14850 T18752 T18751 prep of,source
R14851 T18753 T18755 amod antigen-specific,cells
R14852 T18754 T18755 compound T,cells
R14853 T18755 T18752 pobj cells,of
R14854 T18756 T18751 punct (,source
R14855 T18757 T18759 compound Murphy,al.
R14856 T18758 T18759 nmod et,al.
R14857 T18759 T18751 appos al.,source
R14858 T18760 T18759 punct ",",al.
R14859 T18761 T18759 appos 1990,al.
R14860 T18762 T18751 punct ;,source
R14861 T18763 T18765 compound Ouyang,al.
R14862 T18764 T18765 compound et,al.
R14864 T18766 T18765 punct ",",al.
R14865 T18767 T18765 npadvmod 1998,al.
R14866 T18768 T18765 punct ;,al.
R14867 T18769 T18771 compound Shoemaker,al.
R14868 T18770 T18771 compound et,al.
R14869 T18771 T18765 conj al.,al.
R14870 T18772 T18771 punct ",",al.
R14871 T18773 T18771 appos 2006,al.
R14872 T18774 T18771 punct ),al.
R14873 T18775 T18748 cc and,used
R14874 T18776 T18777 auxpass were,bred
R14875 T18777 T18748 conj bred,used
R14876 T18778 T18777 cc and,bred
R14877 T18779 T18777 conj maintained,bred
R14878 T18780 T18779 prep under,maintained
R14879 T18781 T18782 compound SPF,conditions
R14880 T18782 T18780 pobj conditions,under
R14881 T18783 T18779 prep at,maintained
R14882 T18784 T18785 det the,NIMR
R14883 T18785 T18783 pobj NIMR,at
R14884 T18786 T18785 punct ",",NIMR
R14885 T18787 T18785 conj London,NIMR
R14886 T18788 T18787 punct ",",London
R14887 T18789 T18790 compound Home,Office
R14888 T18790 T18787 conj Office,London
R14889 T18791 T18790 punct ",",Office
R14890 T18792 T18790 conj UK,Office
R14891 T18793 T18792 punct ",",UK
R14892 T18794 T18792 conj Animals,UK
R14893 T18795 T18797 punct (,Procedures
R14894 T18796 T18797 compound Scientific,Procedures
R14895 T18797 T18794 appos Procedures,Animals
R14896 T18798 T18797 punct ),Procedures
R14897 T18799 T18790 conj Act,Office
R14898 T18800 T18799 nummod 1986,Act
R14899 T18801 T18783 cc or,at
R14900 T18802 T18783 conj at,at
R14901 T18803 T18806 det the,School
R14902 T18804 T18805 compound Washington,University
R14903 T18805 T18806 compound University,School
R14904 T18806 T18802 pobj School,at
R14905 T18807 T18806 prep of,School
R14906 T18808 T18807 pobj Medicine,of
R14907 T18809 T18748 punct .,used
R14908 T18810 T18811 amod Female,mice
R14909 T18811 T18813 nsubjpass mice,used
R14910 T18812 T18813 auxpass were,used
R14911 T18813 T18813 ROOT used,used
R14912 T18814 T18813 prep at,used
R14913 T18815 T18814 pobj 8,at
R14914 T18816 T18817 nummod 12,weeks
R14915 T18817 T18818 npadvmod weeks,old
R14916 T18818 T18815 amod old,8
R14917 T18819 T18815 punct ",",8
R14918 T18820 T18815 cc and,8
R14919 T18821 T18822 compound animal,protocols
R14920 T18822 T18824 nsubjpass protocols,approved
R14921 T18823 T18824 auxpass were,approved
R14922 T18824 T18813 conj approved,used
R14923 T18825 T18824 xcomp according,approved
R14924 T18826 T18825 prep to,according
R14925 T18827 T18828 det the,Animals
R14926 T18828 T18826 pobj Animals,to
R14927 T18829 T18831 punct (,Procedures
R14928 T18830 T18831 compound Scientific,Procedures
R14929 T18831 T18828 appos Procedures,Animals
R14930 T18832 T18831 punct ),Procedures
R14931 T18833 T18824 conj Act,approved
R14932 T18834 T18833 nummod 1986,Act
R14933 T18835 T18833 punct ",",Act
R14934 T18836 T18837 compound Home,Office
R14935 T18837 T18833 conj Office,Act
R14936 T18838 T18837 punct ",",Office
R14937 T18839 T18837 conj UK,Office
R14938 T18840 T18824 punct .,approved
R14939 T18841 T18865 nsubjpass Reagents,described
R14940 T18842 T18841 punct ",",Reagents
R14941 T18843 T18841 prep including,Reagents
R14942 T18844 T18843 pobj antibodies,including
R14943 T18845 T18844 prep for,antibodies
R14944 T18846 T18847 compound T,cell
R14945 T18847 T18845 pobj cell,for
R14946 T18848 T18847 cc and,cell
R14947 T18849 T18850 compound DC,preparation
R14948 T18850 T18847 conj preparation,cell
R14949 T18851 T18850 punct ",",preparation
R14950 T18852 T18850 conj purification,preparation
R14951 T18853 T18852 cc and,purification
R14952 T18854 T18852 conj culture,purification
R14953 T18855 T18854 punct ",",culture
R14954 T18856 T18854 conj media,culture
R14955 T18857 T18856 punct ",",media
R14956 T18858 T18856 conj cytokines,media
R14957 T18859 T18858 punct ",",cytokines
R14958 T18860 T18858 cc and,cytokines
R14959 T18861 T18862 compound cytokine,mAbs
R14960 T18862 T18858 conj mAbs,cytokines
R14961 T18863 T18865 aux have,described
R14962 T18864 T18865 auxpass been,described
R14963 T18865 T18865 ROOT described,described
R14964 T18866 T18887 punct (,al.
R14965 T18867 T18869 compound Hosken,al.
R14966 T18868 T18869 nmod et,al.
R14967 T18869 T18887 ccomp al.,al.
R14968 T18870 T18869 punct ",",al.
R14969 T18871 T18869 npadvmod 1995,al.
R14970 T18872 T18887 punct ;,al.
R14971 T18873 T18875 compound Shoemaker,al.
R14972 T18874 T18875 compound et,al.
R14973 T18875 T18887 ccomp al.,al.
R14974 T18876 T18875 punct ",",al.
R14975 T18877 T18875 npadvmod 2006,al.
R14976 T18878 T18887 punct ;,al.
R14977 T18879 T18881 compound Veldhoen,al.
R14978 T18880 T18881 nmod et,al.
R14979 T18881 T18887 ccomp al.,al.
R14980 T18882 T18881 punct ",",al.
R14981 T18883 T18881 npadvmod 2009,al.
R14982 T18884 T18887 punct ;,al.
R14983 T18885 T18887 compound Veldhoen,al.
R14984 T18886 T18887 compound et,al.
R14985 T18887 T18865 parataxis al.,described
R14986 T18888 T18887 punct ",",al.
R14987 T18889 T18887 npadvmod 2006,al.
R14988 T18890 T18887 punct ),al.
R14989 T18891 T18865 punct .,described
R14990 T18892 T18897 nsubj LPS,was
R14991 T18893 T18895 punct (,minnesota
R14992 T18894 T18895 compound S.,minnesota
R14993 T18895 T18892 appos minnesota,LPS
R14994 T18896 T18895 punct ),minnesota
R14995 T18897 T18897 ROOT was,was
R14996 T18898 T18897 prep from,was
R14997 T18899 T18898 pobj Alexis,from
R14998 T18900 T18899 punct ",",Alexis
R14999 T18901 T18902 compound chicken,ovalbumin
R15000 T18902 T18903 compound ovalbumin,protein
R15001 T18903 T18897 attr protein,was
R15002 T18904 T18906 punct (,protein
R15003 T18905 T18906 compound OVA,protein
R15004 T18906 T18903 appos protein,protein
R15005 T18907 T18906 punct ),protein
R15006 T18908 T18897 conj was,was
R15007 T18909 T18908 prep from,was
R15008 T18910 T18909 prep from,from
R15009 T18911 T18910 pobj Sigma-Aldrich,from
R15010 T18912 T18909 punct ",",from
R15011 T18913 T18908 cc and,was
R15012 T18914 T18922 nsubj ovalbumin,was
R15013 T18915 T18914 appos peptide323-339,ovalbumin
R15014 T18916 T18917 punct (,OVA
R15015 T18917 T18915 appos OVA,peptide323-339
R15016 T18918 T18914 punct ),ovalbumin
R15017 T18919 T18920 punct (,endotoxin-free
R15018 T18920 T18914 appos endotoxin-free,ovalbumin
R15019 T18921 T18920 punct ),endotoxin-free
R15020 T18922 T18908 conj was,was
R15021 T18923 T18922 prep from,was
R15022 T18924 T18923 pobj Biosynthesis,from
R15023 T18925 T18922 punct .,was
R15024 T18926 T18927 nsubj U0126,was
R15025 T18927 T18927 ROOT was,was
R15026 T18928 T18927 prep from,was
R15027 T18929 T18930 compound BioMol,International
R15028 T18930 T18928 pobj International,from
R15029 T18931 T18927 punct .,was
R15030 T18932 T18950 nsubj PD184352,were
R15031 T18933 T18935 punct (,inhibitors
R15032 T18934 T18935 compound MEK,inhibitors
R15033 T18935 T18932 parataxis inhibitors,PD184352
R15034 T18936 T18935 punct ),inhibitors
R15035 T18937 T18935 punct ",",inhibitors
R15036 T18938 T18935 conj SB203580,inhibitors
R15037 T18939 T18938 punct (,SB203580
R15038 T18940 T18941 nummod p38,inhibitor
R15039 T18941 T18938 appos inhibitor,SB203580
R15040 T18942 T18938 punct ),SB203580
R15041 T18943 T18938 punct ",",SB203580
R15042 T18944 T18938 cc and,SB203580
R15043 T18945 T18938 conj CT99021,SB203580
R15044 T18946 T18948 punct (,inhibitor
R15045 T18947 T18948 compound GSK3β,inhibitor
R15046 T18948 T18945 appos inhibitor,CT99021
R15047 T18949 T18945 punct ),CT99021
R15048 T18950 T18950 ROOT were,were
R15049 T18951 T18952 compound kind,gifts
R15050 T18952 T18950 attr gifts,were
R15051 T18953 T18952 prep from,gifts
R15052 T18954 T18955 compound P.,Cohen
R15053 T18955 T18953 pobj Cohen,from
R15054 T18956 T18955 cc and,Cohen
R15055 T18957 T18958 compound N.,Shpiro
R15056 T18958 T18955 conj Shpiro,Cohen
R15057 T18959 T18958 punct ",",Shpiro
R15058 T18960 T18958 appos University,Shpiro
R15059 T18961 T18960 prep of,University
R15060 T18962 T18961 pobj Dundee,of
R15061 T18963 T18962 punct ",",Dundee
R15062 T18964 T18958 conj UK,Shpiro
R15063 T18965 T18950 punct .,were
R14863 T18765 T18751 conj al.,source

GO-BP

Id Subject Object Predicate Lexical cue
T18970 96-99 http://purl.obolibrary.org/obo/GO_0006283 denotes TCR
T18971 1032-1044 http://purl.obolibrary.org/obo/GO_0009058 denotes Biosynthesis
T18972 1120-1123 http://purl.obolibrary.org/obo/GO_0004707 denotes p38

GO-MF

Id Subject Object Predicate Lexical cue
T18973 131-135 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T18974 649-659 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T18975 1120-1123 http://purl.obolibrary.org/obo/GO_0004707 denotes p38

GO-CC

Id Subject Object Predicate Lexical cue
T18976 96-99 http://purl.obolibrary.org/obo/GO_0042101 denotes TCR
T18977 223-228 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T18978 666-670 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T18979 649-659 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T18980 649-659 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T18692 0-47 Sentence denotes Mice, Cytokines, Antibodies, and Other Reagents
T18693 48-628 Sentence denotes BALB/c DO11.10 mice transgenic for OVA-specific TCR WT or crossed back with Rag1-, IL-4-, IFN-γ-, STAT4-, and STAT6-deficient mice were used as a source of antigen-specific T cells (Murphy et al., 1990; Ouyang et al., 1998; Shoemaker et al., 2006) and were bred and maintained under SPF conditions at the NIMR, London, Home Office, UK, Animals (Scientific Procedures) Act 1986 or at the Washington University School of Medicine. Female mice were used at 8–12 weeks old, and animal protocols were approved according to the Animals (Scientific Procedures) Act 1986, Home Office, UK.
T18694 629-865 Sentence denotes Reagents, including antibodies for T cell and DC preparation, purification and culture, media, cytokines, and cytokine mAbs have been described (Hosken et al., 1995; Shoemaker et al., 2006; Veldhoen et al., 2009; Veldhoen et al., 2006).
T18695 866-1236 Sentence denotes LPS (S. minnesota) was from Alexis, chicken ovalbumin protein (OVA protein) was from from Sigma-Aldrich, and ovalbumin peptide323-339 (OVA) (endotoxin-free) was from Biosynthesis. U0126 was from BioMol International. PD184352 (MEK inhibitors), SB203580 (p38 inhibitor), and CT99021 (GSK3β inhibitor) were kind gifts from P. Cohen and N. Shpiro, University of Dundee, UK.
T156 0-47 Sentence denotes Mice, Cytokines, Antibodies, and Other Reagents
T157 48-476 Sentence denotes BALB/c DO11.10 mice transgenic for OVA-specific TCR WT or crossed back with Rag1-, IL-4-, IFN-γ-, STAT4-, and STAT6-deficient mice were used as a source of antigen-specific T cells (Murphy et al., 1990; Ouyang et al., 1998; Shoemaker et al., 2006) and were bred and maintained under SPF conditions at the NIMR, London, Home Office, UK, Animals (Scientific Procedures) Act 1986 or at the Washington University School of Medicine.
T158 477-628 Sentence denotes Female mice were used at 8–12 weeks old, and animal protocols were approved according to the Animals (Scientific Procedures) Act 1986, Home Office, UK.
T159 629-865 Sentence denotes Reagents, including antibodies for T cell and DC preparation, purification and culture, media, cytokines, and cytokine mAbs have been described (Hosken et al., 1995; Shoemaker et al., 2006; Veldhoen et al., 2009; Veldhoen et al., 2006).
T160 866-1045 Sentence denotes LPS (S. minnesota) was from Alexis, chicken ovalbumin protein (OVA protein) was from from Sigma-Aldrich, and ovalbumin peptide323-339 (OVA) (endotoxin-free) was from Biosynthesis.
T161 1046-1082 Sentence denotes U0126 was from BioMol International.
T162 1083-1189 Sentence denotes PD184352 (MEK inhibitors), SB203580 (p38 inhibitor), and CT99021 (GSK3β inhibitor) were kind gifts from P.
T163 1190-1236 Sentence denotes Cohen and N. Shpiro, University of Dundee, UK.

events-check-again

Id Subject Object Predicate Lexical cue
T19021 83-86 Protein denotes OVA
T19022 124-128 Protein denotes Rag1
T19023 131-135 Protein denotes IL-4
T19024 138-143 Protein denotes IFN-γ
T19025 146-151 Protein denotes STAT4
T19026 158-163 Protein denotes STAT6
T19027 164-173 Negative_regulation denotes deficient
T19028 164-173 Negative_regulation denotes deficient
T19029 164-173 Negative_regulation denotes deficient
T19030 164-173 Negative_regulation denotes deficient
T19031 164-173 Negative_regulation denotes deficient
T19032 910-919 Protein denotes ovalbumin
T19033 929-932 Protein denotes OVA
T19034 975-984 Protein denotes ovalbumin
T19035 1093-1096 Protein denotes MEK
T19036 1097-1107 Negative_regulation denotes inhibitors
T19037 1120-1123 Protein denotes p38
T19038 1124-1133 Negative_regulation denotes inhibitor
T19039 1149-1154 Protein denotes GSK3β
T19040 1155-1164 Negative_regulation denotes inhibitor
R15082 T19022 T19030 themeOf Rag1,deficient
R15083 T19023 T19028 themeOf IL-4,deficient
R15084 T19024 T19027 themeOf IFN-γ,deficient
R15085 T19025 T19031 themeOf STAT4,deficient
R15086 T19026 T19029 themeOf STAT6,deficient
R15087 T19033 T19032 equivalentTo OVA,ovalbumin
R15088 T19035 T19036 themeOf MEK,inhibitors
R15089 T19037 T19038 themeOf p38,inhibitor
R15090 T19039 T19040 themeOf GSK3β,inhibitor

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T19041 96-102 Protein denotes TCR WT
T19042 124-128 Protein denotes Rag1
T19043 138-143 Protein denotes IFN-γ
T19044 146-151 Protein denotes STAT4
T19045 158-163 Protein denotes STAT6
T19046 164-173 Negative_regulation denotes deficient
T19047 164-173 Negative_regulation denotes deficient
T19048 902-927 Protein denotes chicken ovalbumin protein
T19049 929-940 Protein denotes OVA protein
T19050 975-995 Protein denotes ovalbumin peptide323
T19051 1083-1091 Protein denotes PD184352
T19052 1093-1096 Protein denotes MEK
T19053 1110-1118 Protein denotes SB203580
T19054 1120-1123 Protein denotes p38
T19055 1140-1147 Protein denotes CT99021
T19056 1149-1154 Protein denotes GSK3β
T19057 1097-1107 Negative_regulation denotes inhibitors
T19058 1097-1107 Negative_regulation denotes inhibitors
T19059 1124-1133 Negative_regulation denotes inhibitor
T19060 1124-1133 Negative_regulation denotes inhibitor
T19061 1155-1164 Negative_regulation denotes inhibitor
T19062 1155-1164 Negative_regulation denotes inhibitor
R15091 T19044 T19046 themeOf STAT4,deficient
R15092 T19045 T19047 themeOf STAT6,deficient
R15093 T19051 T19057 themeOf PD184352,inhibitors
R15094 T19052 T19058 themeOf MEK,inhibitors
R15095 T19053 T19059 themeOf SB203580,inhibitor
R15096 T19054 T19060 themeOf p38,inhibitor
R15097 T19055 T19061 themeOf CT99021,inhibitor
R15098 T19056 T19062 themeOf GSK3β,inhibitor

test2

Id Subject Object Predicate Lexical cue
T18656 83-86 Protein denotes OVA
T18657 124-128 Protein denotes Rag1
T18658 131-135 Protein denotes IL-4
T18659 138-143 Protein denotes IFN-γ
T18660 146-151 Protein denotes STAT4
T18661 158-163 Protein denotes STAT6
T18662 164-173 Negative_regulation denotes deficient
T18663 910-919 Protein denotes ovalbumin
T18664 929-932 Protein denotes OVA
T18665 975-984 Protein denotes ovalbumin
T18666 1093-1096 Protein denotes MEK
T18667 1097-1107 Negative_regulation denotes inhibitors
T18668 1120-1123 Protein denotes p38
T18669 1124-1133 Negative_regulation denotes inhibitor
T18670 1149-1154 Protein denotes GSK3β
T18671 1155-1164 Negative_regulation denotes inhibitor
R14790 T18657 T18662 themeOf Rag1,deficient
R14791 T18658 T18662 themeOf IL-4,deficient
R14792 T18659 T18662 themeOf IFN-γ,deficient
R14793 T18660 T18662 themeOf STAT4,deficient
R14794 T18661 T18662 themeOf STAT6,deficient
R14795 T18664 T18663 equivalentTo OVA,ovalbumin
R14796 T18666 T18667 themeOf MEK,inhibitors
R14797 T18668 T18669 themeOf p38,inhibitor
R14798 T18670 T18671 themeOf GSK3β,inhibitor