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PMC:2791889 / 17677-17885 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9877 69-72 Q16539 denotes p38
T9878 69-72 O15264 denotes p38
T9879 69-72 Q15759 denotes p38
T9880 69-72 P53778 denotes p38
T9881 106-111 P49841 denotes GSK3β
T9882 165-170 P22301 denotes IL-10

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T9360 69-77 Protein denotes p38 MAPK
T9361 78-87 Negative_regulation denotes inhibitor
T9362 106-111 Protein denotes GSK3β
T9363 112-121 Negative_regulation denotes inhibitor
T9364 155-161 Regulation denotes effect true
T9365 155-161 Regulation denotes effect true
T9366 165-170 Protein denotes IL-10
T9367 171-181 Gene_expression denotes production
R7146 T9360 T9361 themeOf p38 MAPK,inhibitor
R7147 T9361 T9364 causeOf inhibitor,effect
R7148 T9362 T9363 themeOf GSK3β,inhibitor
R7149 T9363 T9365 causeOf inhibitor,effect
R7150 T9366 T9367 themeOf IL-10,production
R7151 T9367 T9364 themeOf production,effect
R7152 T9367 T9365 themeOf production,effect

2_test

Id Subject Object Predicate Lexical cue
19646904-17850214-46582693 145-149 17850214 denotes 2007
T51427 145-149 17850214 denotes 2007

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9760 0-4 IN denotes Upon
T9761 5-13 NN denotes addition
T9762 14-16 IN denotes of
T9763 17-27 NN denotes inhibitors
T9764 28-30 TO denotes to
T9765 31-46 NN denotes other signaling
T9766 47-55 NN denotes pathways
T9767 55-56 -COMMA- denotes ,
T9768 57-66 VB denotes including
T9769 67-68 DT denotes a
T9770 69-72 NN denotes p38
T9771 73-77 NN denotes MAPK
T9772 78-87 NN denotes inhibitor
T9773 87-88 -COMMA- denotes ,
T9774 89-97 NN denotes SB203580
T9775 97-98 -COMMA- denotes ,
T9776 99-101 CC denotes or
T9777 102-105 DT denotes the
T9778 106-111 NN denotes GSK3β
T9779 112-121 NN denotes inhibitor
T9780 121-122 -COMMA- denotes ,
T9781 123-130 NN denotes CT99021
T9782 131-132 -LRB- denotes (
T9783 132-136 NNP denotes Bain
T9784 137-143 NNP denotes et al.
T9785 143-144 -COMMA- denotes ,
T9786 145-149 CD denotes 2007
T9787 149-150 -RRB- denotes )
T9788 150-151 -COMMA- denotes ,
T9789 152-154 DT denotes no
T9790 155-161 NN denotes effect
T9791 162-164 IN denotes on
T9792 165-170 NN denotes IL-10
T9793 171-181 NN denotes production
T9794 182-185 VB denotes was
T9795 186-194 VB denotes observed
T9796 195-196 -LRB- denotes (
T9797 196-206 NN denotes Figure S5B
T9798 206-207 -RRB- denotes )
R7540 T9761 T9760 arg2Of addition,Upon
R7541 T9761 T9762 arg1Of addition,of
R7542 T9761 T9764 arg1Of addition,to
R7543 T9763 T9762 arg2Of inhibitors,of
R7544 T9766 T9764 arg2Of pathways,to
R7545 T9766 T9765 arg1Of pathways,other signaling
R7546 T9766 T9767 arg1Of pathways,","
R7547 T9766 T9768 arg1Of pathways,including
R7548 T9772 T9769 arg1Of inhibitor,a
R7549 T9772 T9770 arg1Of inhibitor,p38
R7550 T9772 T9771 arg1Of inhibitor,MAPK
R7551 T9772 T9773 arg1Of inhibitor,","
R7552 T9772 T9776 arg1Of inhibitor,or
R7553 T9774 T9773 arg2Of SB203580,","
R7554 T9776 T9768 arg2Of or,including
R7555 T9776 T9775 arg1Of or,","
R7556 T9779 T9776 arg2Of inhibitor,or
R7557 T9779 T9777 arg1Of inhibitor,the
R7558 T9779 T9778 arg1Of inhibitor,GSK3β
R7559 T9779 T9780 arg1Of inhibitor,","
R7560 T9781 T9780 arg2Of CT99021,","
R7561 T9781 T9782 arg1Of CT99021,(
R7562 T9784 T9782 arg2Of et al.,(
R7563 T9784 T9783 arg1Of et al.,Bain
R7564 T9784 T9785 arg1Of et al.,","
R7565 T9786 T9785 arg2Of 2007,","
R7566 T9787 T9782 arg3Of ),(
R7567 T9790 T9789 arg1Of effect,no
R7568 T9790 T9791 arg1Of effect,on
R7569 T9790 T9794 arg1Of effect,was
R7570 T9790 T9795 arg2Of effect,observed
R7571 T9793 T9791 arg2Of production,on
R7572 T9793 T9792 arg1Of production,IL-10
R7573 T9795 T9760 arg1Of observed,Upon
R7574 T9795 T9788 arg1Of observed,","
R7575 T9795 T9794 arg2Of observed,was
R7576 T9795 T9796 arg1Of observed,(
R7577 T9797 T9796 arg2Of Figure S5B,(
R7578 T9798 T9796 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10289 0-4 IN denotes Upon
T10290 5-13 NN denotes addition
T10291 14-16 IN denotes of
T10292 17-27 NNS denotes inhibitors
T10293 28-30 TO denotes to
T10294 31-36 JJ denotes other
T10295 37-46 VBG denotes signaling
T10296 47-55 NNS denotes pathways
T10297 55-56 , denotes ,
T10298 57-66 VBG denotes including
T10299 67-68 DT denotes a
T10300 69-72 JJ denotes p38
T10301 73-77 NNP denotes MAPK
T10302 78-87 NN denotes inhibitor
T10303 87-88 , denotes ,
T10304 89-97 NNP denotes SB203580
T10305 97-98 , denotes ,
T10306 99-101 CC denotes or
T10307 102-105 DT denotes the
T10308 106-111 NNP denotes GSK3β
T10309 112-121 NN denotes inhibitor
T10310 121-122 , denotes ,
T10311 123-130 NNP denotes CT99021
T10312 131-132 -LRB- denotes (
T10313 132-136 NNP denotes Bain
T10314 137-139 FW denotes et
T10315 140-143 FW denotes al.
T10316 143-144 , denotes ,
T10317 145-149 CD denotes 2007
T10318 149-150 -RRB- denotes )
T10319 150-151 , denotes ,
T10320 152-154 DT denotes no
T10321 155-161 NN denotes effect
T10322 162-164 IN denotes on
T10323 165-170 NN denotes IL-10
T10324 171-181 NN denotes production
T10325 182-185 VBD denotes was
T10326 186-194 VBN denotes observed
T10327 195-196 -LRB- denotes (
T10328 196-202 NN denotes Figure
T10329 203-206 CD denotes S5B
T10330 206-207 -RRB- denotes )
T10331 207-208 . denotes .
R8009 T10289 T10326 prep Upon,observed
R8010 T10290 T10289 pobj addition,Upon
R8011 T10291 T10290 prep of,addition
R8012 T10292 T10291 pobj inhibitors,of
R8013 T10293 T10290 prep to,addition
R8014 T10294 T10296 amod other,pathways
R8015 T10295 T10296 amod signaling,pathways
R8016 T10296 T10293 pobj pathways,to
R8017 T10297 T10296 punct ",",pathways
R8018 T10298 T10296 prep including,pathways
R8019 T10299 T10302 det a,inhibitor
R8020 T10300 T10302 amod p38,inhibitor
R8021 T10301 T10302 compound MAPK,inhibitor
R8022 T10302 T10298 pobj inhibitor,including
R8023 T10303 T10302 punct ",",inhibitor
R8024 T10304 T10302 appos SB203580,inhibitor
R8025 T10305 T10304 punct ",",SB203580
R8026 T10306 T10304 cc or,SB203580
R8027 T10307 T10309 det the,inhibitor
R8028 T10308 T10309 compound GSK3β,inhibitor
R8029 T10309 T10304 conj inhibitor,SB203580
R8030 T10310 T10309 punct ",",inhibitor
R8031 T10311 T10309 appos CT99021,inhibitor
R8032 T10312 T10315 punct (,al.
R8033 T10313 T10315 compound Bain,al.
R8034 T10314 T10315 nmod et,al.
R8035 T10315 T10309 parataxis al.,inhibitor
R8036 T10316 T10315 punct ",",al.
R8037 T10317 T10315 npadvmod 2007,al.
R8038 T10318 T10315 punct ),al.
R8039 T10319 T10309 punct ",",inhibitor
R8040 T10320 T10321 det no,effect
R8041 T10321 T10326 nsubjpass effect,observed
R8042 T10322 T10321 prep on,effect
R8043 T10323 T10324 compound IL-10,production
R8044 T10324 T10322 pobj production,on
R8045 T10325 T10326 auxpass was,observed
R8046 T10326 T10326 ROOT observed,observed
R8047 T10327 T10328 punct (,Figure
R8048 T10328 T10326 oprd Figure,observed
R8049 T10329 T10328 nummod S5B,Figure
R8050 T10330 T10328 punct ),Figure
R8051 T10331 T10326 punct .,observed

GO-BP

Id Subject Object Predicate Lexical cue
T10383 165-181 http://purl.obolibrary.org/obo/GO_0032653 denotes IL-10 production
T10388 165-181 http://purl.obolibrary.org/obo/GO_0032613 denotes IL-10 production
T10403 69-72 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T10404 73-77 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T10412 37-46 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T10419 37-55 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathways

GO-MF

Id Subject Object Predicate Lexical cue
T10427 165-170 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T10442 69-72 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T10443 73-77 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK

sentences

Id Subject Object Predicate Lexical cue
T9390 0-208 Sentence denotes Upon addition of inhibitors to other signaling pathways, including a p38 MAPK inhibitor, SB203580, or the GSK3β inhibitor, CT99021 (Bain et al., 2007), no effect on IL-10 production was observed (Figure S5B).
T91 0-208 Sentence denotes Upon addition of inhibitors to other signaling pathways, including a p38 MAPK inhibitor, SB203580, or the GSK3β inhibitor, CT99021 (Bain et al., 2007), no effect on IL-10 production was observed (Figure S5B).

events-check-again

Id Subject Object Predicate Lexical cue Negation
T10777 69-77 Protein denotes p38 MAPK
T10778 78-87 Negative_regulation denotes inhibitor
T10779 106-111 Protein denotes GSK3β
T10780 112-121 Negative_regulation denotes inhibitor
T10781 155-161 Regulation denotes effect true
T10782 155-161 Regulation denotes effect true
T10783 165-170 Protein denotes IL-10
T10784 171-181 Gene_expression denotes production
R8317 T10777 T10778 themeOf p38 MAPK,inhibitor
R8318 T10778 T10781 causeOf inhibitor,effect
R8319 T10779 T10780 themeOf GSK3β,inhibitor
R8320 T10780 T10782 causeOf inhibitor,effect
R8321 T10783 T10784 themeOf IL-10,production
R8322 T10784 T10781 themeOf production,effect
R8323 T10784 T10782 themeOf production,effect

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10869 69-77 Protein denotes p38 MAPK
T10870 106-111 Protein denotes GSK3β
T10871 165-170 Protein denotes IL-10
T10872 78-87 Negative_regulation denotes inhibitor
T10873 112-121 Negative_regulation denotes inhibitor
T10874 171-181 Gene_expression denotes production
T10875 155-161 Regulation denotes effect
T10876 155-161 Regulation denotes effect
R8373 T10869 T10872 themeOf p38 MAPK,inhibitor
R8374 T10870 T10873 themeOf GSK3β,inhibitor
R8375 T10871 T10874 themeOf IL-10,production
R8376 T10872 T10875 causeOf inhibitor,effect
R8377 T10873 T10876 causeOf inhibitor,effect
R8378 T10874 T10875 themeOf production,effect
R8379 T10874 T10876 themeOf production,effect

test2

Id Subject Object Predicate Lexical cue
T9252 69-77 Protein denotes p38 MAPK
T9253 78-87 Negative_regulation denotes inhibitor
T9254 106-111 Protein denotes GSK3β
T9255 112-121 Negative_regulation denotes inhibitor
T9256 155-161 Regulation denotes effect
T9257 165-170 Protein denotes IL-10
T9258 171-181 Gene_expression denotes production
R7068 T9252 T9253 themeOf p38 MAPK,inhibitor
R7069 T9253 T9256 causeOf inhibitor,effect
R7070 T9254 T9255 themeOf GSK3β,inhibitor
R7071 T9255 T9256 causeOf inhibitor,effect
R7072 T9257 T9258 themeOf IL-10,production
R7073 T9258 T9256 themeOf production,effect