
PMC:2791889 / 16151-16502
Annnotations
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9844 | 41-45 | P27361 | denotes | ERK1 |
T9845 | 50-54 | P28482 | denotes | ERK2 |
T9846 | 213-217 | P27361 | denotes | ERK1 |
T9847 | 222-226 | P28482 | denotes | ERK2 |
T9848 | 257-262 | P29459 | denotes | IL-12 |
T9849 | 257-262 | P29460 | denotes | IL-12 |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9296 | 41-45 | Protein | denotes | ERK1 |
T9297 | 50-54 | Protein | denotes | ERK2 |
T9298 | 55-65 | Positive_regulation | denotes | activation |
T9299 | 55-65 | Positive_regulation | denotes | activation |
T9300 | 190-198 | Positive_regulation | denotes | enhanced |
T9301 | 190-198 | Positive_regulation | denotes | enhanced |
T9302 | 203-212 | Positive_regulation | denotes | prolonged |
T9303 | 203-212 | Positive_regulation | denotes | prolonged |
T9304 | 213-217 | Protein | denotes | ERK1 |
T9305 | 222-226 | Protein | denotes | ERK2 |
T9306 | 227-237 | Positive_regulation | denotes | activation |
T9307 | 227-237 | Positive_regulation | denotes | activation |
T9308 | 257-262 | Protein | denotes | IL-12 |
R7100 | T9296 | T9299 | themeOf | ERK1,activation |
R7101 | T9297 | T9298 | themeOf | ERK2,activation |
R7102 | T9304 | T9307 | themeOf | ERK1,activation |
R7103 | T9305 | T9306 | themeOf | ERK2,activation |
R7104 | T9306 | T9300 | themeOf | activation,enhanced |
R7105 | T9306 | T9302 | themeOf | activation,prolonged |
R7106 | T9307 | T9301 | themeOf | activation,enhanced |
R7107 | T9307 | T9303 | themeOf | activation,prolonged |
R7108 | T9308 | T9301 | causeOf | IL-12,enhanced |
R7109 | T9308 | T9300 | causeOf | IL-12,enhanced |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9494 | 0-8 | IN | denotes | Although |
T9495 | 9-12 | DT | denotes | the |
T9496 | 13-21 | JJ | denotes | apparent |
T9497 | 22-26 | NN | denotes | peak |
T9498 | 27-30 | CC | denotes | and |
T9499 | 31-37 | NN | denotes | amount |
T9500 | 38-40 | IN | denotes | of |
T9501 | 41-45 | NN | denotes | ERK1 |
T9502 | 46-49 | CC | denotes | and |
T9503 | 50-54 | NN | denotes | ERK2 |
T9504 | 55-65 | NN | denotes | activation |
T9505 | 66-72 | VB | denotes | varied |
T9506 | 73-81 | RB | denotes | slightly |
T9507 | 82-89 | IN | denotes | between |
T9508 | 90-101 | NN | denotes | experiments |
T9509 | 101-102 | -COMMA- | denotes | , |
T9510 | 103-104 | DT | denotes | a |
T9511 | 105-115 | JJ | denotes | consistent |
T9512 | 116-123 | NN | denotes | finding |
T9513 | 124-127 | VB | denotes | was |
T9514 | 128-132 | IN | denotes | that |
T9515 | 133-137 | JJ | denotes | high |
T9516 | 138-145 | NN | denotes | antigen |
T9517 | 146-150 | NN | denotes | dose |
T9518 | 151-165 | VB | denotes | differentiated |
T9519 | 166-169 | NN | denotes | Th1 |
T9520 | 170-175 | NN | denotes | cells |
T9521 | 176-182 | RB | denotes | always |
T9522 | 183-189 | VB | denotes | showed |
T9523 | 190-198 | VB | denotes | enhanced |
T9524 | 199-202 | CC | denotes | and |
T9525 | 203-212 | JJ | denotes | prolonged |
T9526 | 213-217 | NN | denotes | ERK1 |
T9527 | 218-221 | CC | denotes | and |
T9528 | 222-226 | NN | denotes | ERK2 |
T9529 | 227-237 | NN | denotes | activation |
T9530 | 238-240 | IN | denotes | in |
T9531 | 241-244 | DT | denotes | the |
T9532 | 245-253 | NN | denotes | presence |
T9533 | 254-256 | IN | denotes | of |
T9534 | 257-262 | NN | denotes | IL-12 |
T9535 | 262-263 | -COMMA- | denotes | , |
T9536 | 264-274 | RB | denotes | regardless |
T9537 | 275-277 | IN | denotes | of |
T9538 | 278-285 | IN | denotes | whether |
T9539 | 286-290 | PRP | denotes | they |
T9540 | 291-295 | VB | denotes | were |
T9541 | 296-308 | VB | denotes | restimulated |
T9542 | 309-313 | IN | denotes | with |
T9543 | 314-318 | JJ | denotes | high |
T9544 | 319-321 | CC | denotes | or |
T9545 | 322-325 | JJ | denotes | low |
T9546 | 326-333 | NN | denotes | antigen |
T9547 | 334-338 | NN | denotes | dose |
T9548 | 339-340 | -LRB- | denotes | ( |
T9549 | 340-349 | NN | denotes | Figure 5B |
T9550 | 349-350 | -RRB- | denotes | ) |
R7270 | T9497 | T9498 | arg1Of | peak,and |
R7271 | T9498 | T9495 | arg1Of | and,the |
R7272 | T9498 | T9496 | arg1Of | and,apparent |
R7273 | T9498 | T9500 | arg1Of | and,of |
R7274 | T9498 | T9505 | arg1Of | and,varied |
R7275 | T9499 | T9498 | arg2Of | amount,and |
R7276 | T9501 | T9502 | arg1Of | ERK1,and |
R7277 | T9503 | T9502 | arg2Of | ERK2,and |
R7278 | T9504 | T9500 | arg2Of | activation,of |
R7279 | T9504 | T9501 | arg1Of | activation,ERK1 |
R7280 | T9504 | T9503 | arg1Of | activation,ERK2 |
R7281 | T9505 | T9494 | arg2Of | varied,Although |
R7282 | T9505 | T9506 | arg1Of | varied,slightly |
R7283 | T9505 | T9507 | arg1Of | varied,between |
R7284 | T9508 | T9507 | arg2Of | experiments,between |
R7285 | T9512 | T9510 | arg1Of | finding,a |
R7286 | T9512 | T9511 | arg1Of | finding,consistent |
R7287 | T9512 | T9513 | arg1Of | finding,was |
R7288 | T9513 | T9494 | arg1Of | was,Although |
R7289 | T9513 | T9509 | arg1Of | was,"," |
R7290 | T9517 | T9515 | arg1Of | dose,high |
R7291 | T9517 | T9516 | arg1Of | dose,antigen |
R7292 | T9517 | T9518 | arg1Of | dose,differentiated |
R7293 | T9518 | T9513 | arg2Of | differentiated,was |
R7294 | T9518 | T9514 | arg1Of | differentiated,that |
R7295 | T9519 | T9522 | modOf | Th1,showed |
R7296 | T9519 | T9537 | arg1Of | Th1,of |
R7297 | T9520 | T9522 | arg1Of | cells,showed |
R7298 | T9522 | T9521 | arg1Of | showed,always |
R7299 | T9522 | T9535 | arg1Of | showed,"," |
R7300 | T9522 | T9536 | arg1Of | showed,regardless |
R7301 | T9523 | T9524 | arg1Of | enhanced,and |
R7302 | T9525 | T9524 | arg2Of | prolonged,and |
R7303 | T9526 | T9523 | arg1Of | ERK1,enhanced |
R7304 | T9526 | T9525 | arg1Of | ERK1,prolonged |
R7305 | T9526 | T9527 | arg1Of | ERK1,and |
R7306 | T9527 | T9522 | arg2Of | and,showed |
R7307 | T9527 | T9530 | arg1Of | and,in |
R7308 | T9529 | T9527 | arg2Of | activation,and |
R7309 | T9529 | T9528 | arg1Of | activation,ERK2 |
R7310 | T9532 | T9530 | arg2Of | presence,in |
R7311 | T9532 | T9531 | arg1Of | presence,the |
R7312 | T9532 | T9533 | arg1Of | presence,of |
R7313 | T9534 | T9533 | arg2Of | IL-12,of |
R7314 | T9539 | T9540 | arg1Of | they,were |
R7315 | T9539 | T9541 | arg2Of | they,restimulated |
R7316 | T9541 | T9537 | arg2Of | restimulated,of |
R7317 | T9541 | T9538 | arg1Of | restimulated,whether |
R7318 | T9541 | T9540 | arg2Of | restimulated,were |
R7319 | T9541 | T9542 | arg1Of | restimulated,with |
R7320 | T9543 | T9542 | arg2Of | high,with |
R7321 | T9547 | T9518 | arg2Of | dose,differentiated |
R7322 | T9547 | T9519 | arg1Of | dose,Th1 |
R7323 | T9547 | T9544 | arg1Of | dose,or |
R7324 | T9547 | T9545 | arg1Of | dose,low |
R7325 | T9547 | T9546 | arg1Of | dose,antigen |
R7326 | T9547 | T9548 | arg1Of | dose,( |
R7327 | T9549 | T9548 | arg2Of | Figure 5B,( |
R7328 | T9550 | T9548 | arg3Of | ),( |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10003 | 0-8 | IN | denotes | Although |
T10004 | 9-12 | DT | denotes | the |
T10005 | 13-21 | JJ | denotes | apparent |
T10006 | 22-26 | NN | denotes | peak |
T10007 | 27-30 | CC | denotes | and |
T10008 | 31-37 | NN | denotes | amount |
T10009 | 38-40 | IN | denotes | of |
T10010 | 41-45 | CD | denotes | ERK1 |
T10011 | 46-49 | CC | denotes | and |
T10012 | 50-54 | CD | denotes | ERK2 |
T10013 | 55-65 | NN | denotes | activation |
T10014 | 66-72 | VBD | denotes | varied |
T10015 | 73-81 | RB | denotes | slightly |
T10016 | 82-89 | IN | denotes | between |
T10017 | 90-101 | NNS | denotes | experiments |
T10018 | 101-102 | , | denotes | , |
T10019 | 103-104 | DT | denotes | a |
T10020 | 105-115 | JJ | denotes | consistent |
T10021 | 116-123 | NN | denotes | finding |
T10022 | 124-127 | VBD | denotes | was |
T10023 | 128-132 | DT | denotes | that |
T10024 | 133-137 | JJ | denotes | high |
T10025 | 138-145 | NN | denotes | antigen |
T10026 | 146-150 | NN | denotes | dose |
T10027 | 151-165 | VBD | denotes | differentiated |
T10028 | 166-169 | CD | denotes | Th1 |
T10029 | 170-175 | NNS | denotes | cells |
T10030 | 176-182 | RB | denotes | always |
T10031 | 183-189 | VBD | denotes | showed |
T10032 | 190-198 | JJ | denotes | enhanced |
T10033 | 199-202 | CC | denotes | and |
T10034 | 203-212 | JJ | denotes | prolonged |
T10035 | 213-217 | CD | denotes | ERK1 |
T10036 | 218-221 | CC | denotes | and |
T10037 | 222-226 | CD | denotes | ERK2 |
T10038 | 227-237 | NN | denotes | activation |
T10039 | 238-240 | IN | denotes | in |
T10040 | 241-244 | DT | denotes | the |
T10041 | 245-253 | NN | denotes | presence |
T10042 | 254-256 | IN | denotes | of |
T10043 | 257-262 | NN | denotes | IL-12 |
T10044 | 262-263 | , | denotes | , |
T10045 | 264-274 | RB | denotes | regardless |
T10046 | 275-277 | IN | denotes | of |
T10047 | 278-285 | IN | denotes | whether |
T10048 | 286-290 | PRP | denotes | they |
T10049 | 291-295 | VBD | denotes | were |
T10050 | 296-308 | VBN | denotes | restimulated |
T10051 | 309-313 | IN | denotes | with |
T10052 | 314-318 | JJ | denotes | high |
T10053 | 319-321 | CC | denotes | or |
T10054 | 322-325 | JJ | denotes | low |
T10055 | 326-333 | NN | denotes | antigen |
T10056 | 334-338 | NN | denotes | dose |
T10057 | 339-340 | -LRB- | denotes | ( |
T10058 | 340-346 | NN | denotes | Figure |
T10059 | 347-349 | NN | denotes | 5B |
T10060 | 349-350 | -RRB- | denotes | ) |
T10061 | 350-351 | . | denotes | . |
R7744 | T10024 | T10025 | amod | high,antigen |
R7745 | T10025 | T10026 | compound | antigen,dose |
R7746 | T10026 | T10027 | nsubj | dose,differentiated |
R7747 | T10027 | T10022 | conj | differentiated,was |
R7748 | T10028 | T10029 | nummod | Th1,cells |
R7749 | T10029 | T10027 | dobj | cells,differentiated |
R7750 | T10030 | T10031 | advmod | always,showed |
R7751 | T10031 | T10027 | conj | showed,differentiated |
R7752 | T10032 | T10035 | amod | enhanced,ERK1 |
R7753 | T10033 | T10032 | cc | and,enhanced |
R7754 | T10034 | T10032 | conj | prolonged,enhanced |
R7755 | T10035 | T10031 | dobj | ERK1,showed |
R7756 | T10036 | T10035 | cc | and,ERK1 |
R7757 | T10037 | T10038 | nummod | ERK2,activation |
R7758 | T10038 | T10035 | conj | activation,ERK1 |
R7759 | T10039 | T10038 | prep | in,activation |
R7760 | T10040 | T10041 | det | the,presence |
R7761 | T10041 | T10039 | pobj | presence,in |
R7762 | T10042 | T10041 | prep | of,presence |
R7763 | T10043 | T10042 | pobj | IL-12,of |
R7764 | T10044 | T10027 | punct | ",",differentiated |
R7765 | T10045 | T10027 | advmod | regardless,differentiated |
R7766 | T10046 | T10045 | prep | of,regardless |
R7767 | T10047 | T10050 | mark | whether,restimulated |
R7768 | T10048 | T10050 | nsubjpass | they,restimulated |
R7769 | T10049 | T10050 | auxpass | were,restimulated |
R7770 | T10050 | T10046 | pcomp | restimulated,of |
R7771 | T10051 | T10050 | prep | with,restimulated |
R7772 | T10052 | T10056 | amod | high,dose |
R7773 | T10053 | T10052 | cc | or,high |
R7774 | T10054 | T10052 | conj | low,high |
R7775 | T10055 | T10056 | compound | antigen,dose |
R7776 | T10056 | T10051 | pobj | dose,with |
R7777 | T10057 | T10056 | punct | (,dose |
R7778 | T10058 | T10059 | compound | Figure,5B |
R7779 | T10059 | T10056 | appos | 5B,dose |
R7780 | T10060 | T10056 | punct | ),dose |
R7781 | T10061 | T10027 | punct | .,differentiated |
R7723 | T10003 | T10014 | mark | Although,varied |
R7724 | T10004 | T10006 | det | the,peak |
R7725 | T10005 | T10006 | amod | apparent,peak |
R7726 | T10006 | T10014 | nsubj | peak,varied |
R7727 | T10007 | T10006 | cc | and,peak |
R7728 | T10008 | T10006 | conj | amount,peak |
R7729 | T10009 | T10008 | prep | of,amount |
R7730 | T10010 | T10009 | pobj | ERK1,of |
R7731 | T10011 | T10010 | cc | and,ERK1 |
R7732 | T10012 | T10010 | conj | ERK2,ERK1 |
R7733 | T10013 | T10008 | conj | activation,amount |
R7734 | T10014 | T10022 | advcl | varied,was |
R7735 | T10015 | T10014 | advmod | slightly,varied |
R7736 | T10016 | T10014 | prep | between,varied |
R7737 | T10017 | T10016 | pobj | experiments,between |
R7738 | T10018 | T10022 | punct | ",",was |
R7739 | T10019 | T10021 | det | a,finding |
R7740 | T10020 | T10021 | amod | consistent,finding |
R7741 | T10021 | T10022 | nsubj | finding,was |
R7742 | T10022 | T10022 | ROOT | was,was |
R7743 | T10023 | T10026 | det | that,dose |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10392 | 41-45 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK1 |
T10393 | 213-217 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK1 |
T10398 | 50-54 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK2 |
T10399 | 222-226 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK2 |
T10408 | 41-65 | http://purl.obolibrary.org/obo/GO_0070374 | denotes | ERK1 and ERK2 activation |
T10409 | 213-237 | http://purl.obolibrary.org/obo/GO_0070374 | denotes | ERK1 and ERK2 activation |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10431 | 41-45 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK1 |
T10432 | 213-217 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK1 |
T10437 | 50-54 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK2 |
T10438 | 222-226 | http://purl.obolibrary.org/obo/GO_0004707 | denotes | ERK2 |
T10445 | 257-262 | http://purl.obolibrary.org/obo/GO_0005143 | denotes | IL-12 |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10457 | 170-175 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9383 | 0-351 | Sentence | denotes | Although the apparent peak and amount of ERK1 and ERK2 activation varied slightly between experiments, a consistent finding was that high antigen dose differentiated Th1 cells always showed enhanced and prolonged ERK1 and ERK2 activation in the presence of IL-12, regardless of whether they were restimulated with high or low antigen dose (Figure 5B). |
T84 | 0-351 | Sentence | denotes | Although the apparent peak and amount of ERK1 and ERK2 activation varied slightly between experiments, a consistent finding was that high antigen dose differentiated Th1 cells always showed enhanced and prolonged ERK1 and ERK2 activation in the presence of IL-12, regardless of whether they were restimulated with high or low antigen dose (Figure 5B). |
events-check-again
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10713 | 41-45 | Protein | denotes | ERK1 |
T10714 | 50-54 | Protein | denotes | ERK2 |
T10715 | 55-65 | Positive_regulation | denotes | activation |
T10716 | 55-65 | Positive_regulation | denotes | activation |
T10717 | 190-198 | Positive_regulation | denotes | enhanced |
T10718 | 190-198 | Positive_regulation | denotes | enhanced |
T10719 | 203-212 | Positive_regulation | denotes | prolonged |
T10720 | 203-212 | Positive_regulation | denotes | prolonged |
T10721 | 213-217 | Protein | denotes | ERK1 |
T10722 | 222-226 | Protein | denotes | ERK2 |
T10723 | 227-237 | Positive_regulation | denotes | activation |
T10724 | 227-237 | Positive_regulation | denotes | activation |
T10725 | 257-262 | Protein | denotes | IL-12 |
R8271 | T10713 | T10716 | themeOf | ERK1,activation |
R8272 | T10714 | T10715 | themeOf | ERK2,activation |
R8273 | T10721 | T10724 | themeOf | ERK1,activation |
R8274 | T10722 | T10723 | themeOf | ERK2,activation |
R8275 | T10723 | T10717 | themeOf | activation,enhanced |
R8276 | T10723 | T10719 | themeOf | activation,prolonged |
R8277 | T10724 | T10718 | themeOf | activation,enhanced |
R8278 | T10724 | T10720 | themeOf | activation,prolonged |
R8279 | T10725 | T10718 | causeOf | IL-12,enhanced |
R8280 | T10725 | T10717 | causeOf | IL-12,enhanced |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10813 | 41-45 | Protein | denotes | ERK1 |
T10814 | 50-54 | Protein | denotes | ERK2 |
T10815 | 213-217 | Protein | denotes | ERK1 |
T10816 | 222-226 | Protein | denotes | ERK2 |
T10817 | 257-262 | Protein | denotes | IL-12 |
T10818 | 55-65 | Positive_regulation | denotes | activation |
T10819 | 55-65 | Positive_regulation | denotes | activation |
T10820 | 227-237 | Positive_regulation | denotes | activation |
T10821 | 227-237 | Positive_regulation | denotes | activation |
T10822 | 203-212 | Positive_regulation | denotes | prolonged |
T10823 | 203-212 | Positive_regulation | denotes | prolonged |
R8343 | T10813 | T10818 | themeOf | ERK1,activation |
R8344 | T10814 | T10819 | themeOf | ERK2,activation |
R8345 | T10815 | T10820 | themeOf | ERK1,activation |
R8346 | T10816 | T10821 | themeOf | ERK2,activation |
R8347 | T10820 | T10822 | themeOf | activation,prolonged |
R8348 | T10821 | T10823 | themeOf | activation,prolonged |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T9206 | 41-45 | Protein | denotes | ERK1 |
T9207 | 50-54 | Protein | denotes | ERK2 |
T9208 | 55-65 | Positive_regulation | denotes | activation |
T9209 | 190-198 | Positive_regulation | denotes | enhanced |
T9210 | 203-212 | Positive_regulation | denotes | prolonged |
T9211 | 213-217 | Protein | denotes | ERK1 |
T9212 | 222-226 | Protein | denotes | ERK2 |
T9213 | 227-237 | Positive_regulation | denotes | activation |
T9214 | 257-262 | Protein | denotes | IL-12 |
R7037 | T9206 | T9208 | themeOf | ERK1,activation |
R7038 | T9207 | T9208 | themeOf | ERK2,activation |
R7039 | T9208 | T9209 | themeOf | activation,enhanced |
R7040 | T9211 | T9213 | themeOf | ERK1,activation |
R7041 | T9212 | T9213 | themeOf | ERK2,activation |
R7042 | T9213 | T9210 | themeOf | activation,prolonged |