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PMC:2791889 / 10784-11069 JSONTXT

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bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5649 40-45 Q14765 denotes STAT4
T5650 75-80 P22301 denotes IL-10
T5651 112-117 P01579 denotes IFN-γ
T5652 197-202 P01579 denotes IFN-γ
T5653 219-222 P01730 denotes CD4
T5654 251-256 P29459 denotes IL-12
T5655 251-256 P29460 denotes IL-12
T5656 281-284 E2RVI8 denotes OVA

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T4966 27-36 Negative_regulation denotes inability
T4967 40-45 Protein denotes STAT4
T4968 46-55 Negative_regulation denotes deficient
T4969 67-74 Gene_expression denotes produce
T4970 75-80 Protein denotes IL-10
T4971 90-93 Positive_regulation denotes due true
T4972 101-108 Negative_regulation denotes absence
T4973 112-117 Protein denotes IFN-γ
T4974 197-202 Protein denotes IFN-γ
T4975 203-212 Negative_regulation denotes deficient
T4976 219-222 Protein denotes CD4
T4977 251-256 Protein denotes IL-12
T4978 281-284 Protein denotes OVA
R3736 T4969 T4966 themeOf produce,inability
R3740 T4974 T4975 themeOf IFN-γ,deficient
R3733 T4966 T4971 themeOf inability,due
R3734 T4967 T4968 themeOf STAT4,deficient
R3735 T4968 T4966 causeOf deficient,inability
R3737 T4970 T4969 themeOf IL-10,produce
R3738 T4972 T4971 causeOf absence,due
R3739 T4973 T4972 themeOf IFN-γ,absence

2_test

Id Subject Object Predicate Lexical cue
19646904-16751369-46582689 153-157 16751369 denotes 2006
T55638 153-157 16751369 denotes 2006

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5379 0-2 TO denotes To
T5380 3-14 VB denotes investigate
T5381 15-22 IN denotes whether
T5382 23-26 DT denotes the
T5383 27-36 NN denotes inability
T5384 37-39 IN denotes of
T5385 40-55 JJ denotes STAT4-deficient
T5386 56-63 NN denotes T cells
T5387 64-66 TO denotes to
T5388 67-74 VB denotes produce
T5389 75-80 NN denotes IL-10
T5390 81-86 MD denotes might
T5391 87-89 VB denotes be
T5392 90-93 JJ denotes due
T5393 94-96 TO denotes to
T5394 97-100 DT denotes the
T5395 101-108 NN denotes absence
T5396 109-111 IN denotes of
T5397 112-117 NN denotes IFN-γ
T5398 117-118 -COMMA- denotes ,
T5399 119-121 IN denotes as
T5400 122-131 VB denotes suggested
T5401 132-138 IN denotes before
T5402 139-140 -LRB- denotes (
T5403 140-144 NNP denotes Shaw
T5404 145-151 NNP denotes et al.
T5405 151-152 -COMMA- denotes ,
T5406 153-157 CD denotes 2006
T5407 157-158 -RRB- denotes )
T5408 158-159 -COMMA- denotes ,
T5409 160-162 PRP denotes we
T5410 163-177 VB denotes differentiated
T5411 178-185 NN denotes DO11.10
T5412 186-188 CC denotes or
T5413 189-196 NN denotes DO11.10
T5414 197-212 JJ denotes IFN-γ-deficient
T5415 213-218 JJ denotes naive
T5416 219-223 JJ denotes CD4+
T5417 224-231 NN denotes T cells
T5418 232-234 IN denotes in
T5419 235-238 DT denotes the
T5420 239-247 NN denotes presence
T5421 248-250 IN denotes of
T5422 251-256 NN denotes IL-12
T5423 257-260 CC denotes and
T5424 261-271 VB denotes increasing
T5425 272-277 NN denotes doses
T5426 278-280 IN denotes of
T5427 281-284 NN denotes OVA
R4111 T5380 T5379 arg1Of investigate,To
R4112 T5383 T5382 arg1Of inability,the
R4113 T5383 T5384 arg1Of inability,of
R4114 T5383 T5387 modOf inability,to
R4115 T5383 T5390 arg1Of inability,might
R4116 T5383 T5391 arg1Of inability,be
R4117 T5383 T5393 arg1Of inability,to
R4118 T5386 T5384 arg2Of T cells,of
R4119 T5386 T5385 arg1Of T cells,STAT4-deficient
R4120 T5388 T5387 arg1Of produce,to
R4121 T5389 T5388 arg2Of IL-10,produce
R4122 T5391 T5380 arg2Of be,investigate
R4123 T5391 T5381 arg1Of be,whether
R4124 T5391 T5390 arg2Of be,might
R4125 T5391 T5398 arg1Of be,","
R4126 T5391 T5399 arg1Of be,as
R4127 T5393 T5391 arg2Of to,be
R4128 T5393 T5392 arg1Of to,due
R4129 T5395 T5393 arg2Of absence,to
R4130 T5395 T5394 arg1Of absence,the
R4131 T5395 T5396 arg1Of absence,of
R4132 T5397 T5396 arg2Of IFN-γ,of
R4133 T5400 T5399 arg2Of suggested,as
R4134 T5400 T5401 arg1Of suggested,before
R4135 T5401 T5402 arg1Of before,(
R4136 T5404 T5402 arg2Of et al.,(
R4137 T5404 T5403 arg1Of et al.,Shaw
R4138 T5404 T5405 arg1Of et al.,","
R4139 T5406 T5405 arg2Of 2006,","
R4140 T5407 T5402 arg3Of ),(
R4141 T5409 T5410 arg1Of we,differentiated
R4142 T5410 T5401 arg2Of differentiated,before
R4143 T5410 T5408 arg1Of differentiated,","
R4144 T5410 T5418 arg1Of differentiated,in
R4145 T5415 T5411 arg1Of naive,DO11.10
R4146 T5415 T5412 arg1Of naive,or
R4147 T5415 T5413 arg1Of naive,DO11.10
R4148 T5415 T5414 arg1Of naive,IFN-γ-deficient
R4149 T5417 T5410 arg2Of T cells,differentiated
R4150 T5417 T5415 arg1Of T cells,naive
R4151 T5417 T5416 arg1Of T cells,CD4+
R4152 T5420 T5418 arg2Of presence,in
R4153 T5420 T5419 arg1Of presence,the
R4154 T5420 T5421 arg1Of presence,of
R4155 T5422 T5423 arg1Of IL-12,and
R4156 T5423 T5421 arg2Of and,of
R4157 T5425 T5423 arg2Of doses,and
R4158 T5425 T5424 arg1Of doses,increasing
R4159 T5425 T5426 arg1Of doses,of
R4160 T5427 T5426 arg2Of OVA,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6045 0-2 TO denotes To
T6046 3-14 VB denotes investigate
T6047 15-22 IN denotes whether
T6048 23-26 DT denotes the
T6049 27-36 NN denotes inability
T6050 37-39 IN denotes of
T6051 40-55 JJ denotes STAT4-deficient
T6052 56-57 NNP denotes T
T6053 58-63 NNS denotes cells
T6054 64-66 TO denotes to
T6055 67-74 VB denotes produce
T6056 75-80 NN denotes IL-10
T6057 81-86 MD denotes might
T6058 87-89 VB denotes be
T6059 90-93 JJ denotes due
T6060 94-96 TO denotes to
T6061 97-100 DT denotes the
T6062 101-108 NN denotes absence
T6063 109-111 IN denotes of
T6064 112-117 NNP denotes IFN-γ
T6065 117-118 , denotes ,
T6066 119-121 IN denotes as
T6067 122-131 VBN denotes suggested
T6068 132-138 IN denotes before
T6069 139-140 -LRB- denotes (
T6070 140-144 NNP denotes Shaw
T6071 145-147 FW denotes et
T6072 148-151 FW denotes al.
T6073 151-152 , denotes ,
T6074 153-157 CD denotes 2006
T6075 157-158 -RRB- denotes )
T6076 158-159 , denotes ,
T6077 160-162 PRP denotes we
T6078 163-177 VBD denotes differentiated
T6079 178-182 NNP denotes DO11
T6080 182-185 CD denotes .10
T6081 186-188 CC denotes or
T6082 189-193 CD denotes DO11
T6083 193-196 CD denotes .10
T6084 197-212 JJ denotes IFN-γ-deficient
T6085 213-218 JJ denotes naive
T6086 219-222 NNP denotes CD4
T6087 222-223 CD denotes +
T6088 224-225 NNP denotes T
T6089 226-231 NNS denotes cells
T6090 232-234 IN denotes in
T6091 235-238 DT denotes the
T6092 239-247 NN denotes presence
T6093 248-250 IN denotes of
T6094 251-256 NN denotes IL-12
T6095 257-260 CC denotes and
T6096 261-271 VBG denotes increasing
T6097 272-277 NNS denotes doses
T6098 278-280 IN denotes of
T6099 281-284 NNP denotes OVA
T6100 284-285 . denotes .
R4703 T6045 T6046 aux To,investigate
R4704 T6046 T6078 advcl investigate,differentiated
R4705 T6047 T6058 mark whether,be
R4706 T6048 T6049 det the,inability
R4707 T6049 T6058 nsubj inability,be
R4708 T6050 T6049 prep of,inability
R4709 T6051 T6052 compound STAT4-deficient,T
R4710 T6052 T6053 compound T,cells
R4711 T6053 T6050 pobj cells,of
R4712 T6054 T6055 aux to,produce
R4713 T6055 T6049 acl produce,inability
R4714 T6056 T6055 dobj IL-10,produce
R4715 T6057 T6058 aux might,be
R4716 T6058 T6046 ccomp be,investigate
R4717 T6059 T6058 acomp due,be
R4718 T6060 T6059 pcomp to,due
R4719 T6061 T6062 det the,absence
R4720 T6062 T6060 pobj absence,to
R4721 T6063 T6062 prep of,absence
R4722 T6064 T6063 pobj IFN-γ,of
R4723 T6065 T6058 punct ",",be
R4724 T6066 T6067 mark as,suggested
R4725 T6067 T6058 advcl suggested,be
R4726 T6068 T6067 advmod before,suggested
R4727 T6069 T6072 punct (,al.
R4728 T6070 T6072 compound Shaw,al.
R4729 T6071 T6072 nmod et,al.
R4730 T6072 T6046 prep al.,investigate
R4731 T6073 T6072 punct ",",al.
R4732 T6074 T6072 npadvmod 2006,al.
R4733 T6075 T6072 punct ),al.
R4734 T6076 T6078 punct ",",differentiated
R4735 T6077 T6078 nsubj we,differentiated
R4736 T6078 T6078 ROOT differentiated,differentiated
R4737 T6079 T6078 dobj DO11,differentiated
R4738 T6080 T6089 nummod .10,cells
R4739 T6081 T6080 cc or,.10
R4740 T6082 T6089 nummod DO11,cells
R4741 T6083 T6084 nummod .10,IFN-γ-deficient
R4742 T6084 T6085 npadvmod IFN-γ-deficient,naive
R4743 T6085 T6089 amod naive,cells
R4744 T6086 T6089 compound CD4,cells
R4745 T6087 T6089 nummod +,cells
R4746 T6088 T6089 compound T,cells
R4747 T6089 T6078 conj cells,differentiated
R4748 T6090 T6089 prep in,cells
R4749 T6091 T6092 det the,presence
R4750 T6092 T6090 pobj presence,in
R4751 T6093 T6092 prep of,presence
R4752 T6094 T6093 pobj IL-12,of
R4753 T6095 T6089 cc and,cells
R4754 T6096 T6097 amod increasing,doses
R4755 T6097 T6089 conj doses,cells
R4756 T6098 T6097 prep of,doses
R4757 T6099 T6098 pobj OVA,of
R4758 T6100 T6078 punct .,differentiated

GO-MF

Id Subject Object Predicate Lexical cue
T6355 75-80 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T6378 251-256 http://purl.obolibrary.org/obo/GO_0005143 denotes IL-12

GO-CC

Id Subject Object Predicate Lexical cue
T6396 58-63 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6397 226-231 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5030 0-285 Sentence denotes To investigate whether the inability of STAT4-deficient T cells to produce IL-10 might be due to the absence of IFN-γ, as suggested before (Shaw et al., 2006), we differentiated DO11.10 or DO11.10 IFN-γ-deficient naive CD4+ T cells in the presence of IL-12 and increasing doses of OVA.
T57 0-285 Sentence denotes To investigate whether the inability of STAT4-deficient T cells to produce IL-10 might be due to the absence of IFN-γ, as suggested before (Shaw et al., 2006), we differentiated DO11.10 or DO11.10 IFN-γ-deficient naive CD4+ T cells in the presence of IL-12 and increasing doses of OVA.

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T6750 27-36 Negative_regulation denotes inability
T6751 40-45 Protein denotes STAT4
T6752 46-55 Negative_regulation denotes deficient
T6753 67-74 Gene_expression denotes produce
T6754 75-80 Protein denotes IL-10
T6755 90-93 Positive_regulation denotes due true
T6756 101-108 Negative_regulation denotes absence
T6757 112-117 Protein denotes IFN-γ
T6758 197-202 Protein denotes IFN-γ
T6759 203-212 Negative_regulation denotes deficient
T6760 219-222 Protein denotes CD4
T6761 251-256 Protein denotes IL-12
T6762 281-284 Protein denotes OVA
R5151 T6750 T6755 themeOf inability,due
R5152 T6751 T6752 themeOf STAT4,deficient
R5153 T6752 T6750 causeOf deficient,inability
R5154 T6753 T6750 themeOf produce,inability
R5156 T6754 T6753 themeOf IL-10,produce
R5157 T6756 T6755 causeOf absence,due
R5158 T6757 T6756 themeOf IFN-γ,absence
R5159 T6758 T6759 themeOf IFN-γ,deficient

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T6865 40-45 Protein denotes STAT4
T6866 75-80 Protein denotes IL-10
T6867 112-117 Protein denotes IFN-γ
T6868 189-202 Protein denotes DO11.10 IFN-γ
T6869 219-223 Protein denotes CD4+
T6870 46-55 Negative_regulation denotes deficient
T6871 67-74 Gene_expression denotes produce
T6872 101-108 Negative_regulation denotes absence
T6873 203-212 Negative_regulation denotes deficient
T6874 27-36 Negative_regulation denotes inability
R5233 T6865 T6870 themeOf STAT4,deficient
R5234 T6866 T6871 themeOf IL-10,produce
R5235 T6867 T6872 themeOf IFN-γ,absence
R5236 T6868 T6873 themeOf DO11.10 IFN-γ,deficient
R5237 T6871 T6874 themeOf produce,inability

test2

Id Subject Object Predicate Lexical cue
T4835 40-45 Protein denotes STAT4
T4836 46-55 Negative_regulation denotes deficient
T4837 67-74 Gene_expression denotes produce
T4838 75-80 Protein denotes IL-10
T4839 90-93 Positive_regulation denotes due
T4840 101-108 Negative_regulation denotes absence
T4841 112-117 Protein denotes IFN-γ
T4842 197-202 Protein denotes IFN-γ
T4843 203-212 Negative_regulation denotes deficient
T4844 219-222 Protein denotes CD4
T4845 251-256 Protein denotes IL-12
T4846 281-284 Protein denotes OVA
R3652 T4835 T4836 themeOf STAT4,deficient
R3653 T4837 T4839 themeOf produce,due
R3654 T4838 T4837 themeOf IL-10,produce
R3655 T4840 T4839 causeOf absence,due
R3656 T4841 T4840 themeOf IFN-γ,absence
R3657 T4842 T4843 themeOf IFN-γ,deficient