
PMC:2791889 / 10784-11069
Annnotations
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5649 | 40-45 | Q14765 | denotes | STAT4 |
T5650 | 75-80 | P22301 | denotes | IL-10 |
T5651 | 112-117 | P01579 | denotes | IFN-γ |
T5652 | 197-202 | P01579 | denotes | IFN-γ |
T5653 | 219-222 | P01730 | denotes | CD4 |
T5654 | 251-256 | P29459 | denotes | IL-12 |
T5655 | 251-256 | P29460 | denotes | IL-12 |
T5656 | 281-284 | E2RVI8 | denotes | OVA |
bionlp-st-ge-2016-reference
Id | Subject | Object | Predicate | Lexical cue | Speculation |
---|---|---|---|---|---|
T4966 | 27-36 | Negative_regulation | denotes | inability | |
T4967 | 40-45 | Protein | denotes | STAT4 | |
T4968 | 46-55 | Negative_regulation | denotes | deficient | |
T4969 | 67-74 | Gene_expression | denotes | produce | |
T4970 | 75-80 | Protein | denotes | IL-10 | |
T4971 | 90-93 | Positive_regulation | denotes | due | true |
T4972 | 101-108 | Negative_regulation | denotes | absence | |
T4973 | 112-117 | Protein | denotes | IFN-γ | |
T4974 | 197-202 | Protein | denotes | IFN-γ | |
T4975 | 203-212 | Negative_regulation | denotes | deficient | |
T4976 | 219-222 | Protein | denotes | CD4 | |
T4977 | 251-256 | Protein | denotes | IL-12 | |
T4978 | 281-284 | Protein | denotes | OVA | |
R3736 | T4969 | T4966 | themeOf | produce,inability | |
R3740 | T4974 | T4975 | themeOf | IFN-γ,deficient | |
R3733 | T4966 | T4971 | themeOf | inability,due | |
R3734 | T4967 | T4968 | themeOf | STAT4,deficient | |
R3735 | T4968 | T4966 | causeOf | deficient,inability | |
R3737 | T4970 | T4969 | themeOf | IL-10,produce | |
R3738 | T4972 | T4971 | causeOf | absence,due | |
R3739 | T4973 | T4972 | themeOf | IFN-γ,absence |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
19646904-16751369-46582689 | 153-157 | 16751369 | denotes | 2006 |
T55638 | 153-157 | 16751369 | denotes | 2006 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5379 | 0-2 | TO | denotes | To |
T5380 | 3-14 | VB | denotes | investigate |
T5381 | 15-22 | IN | denotes | whether |
T5382 | 23-26 | DT | denotes | the |
T5383 | 27-36 | NN | denotes | inability |
T5384 | 37-39 | IN | denotes | of |
T5385 | 40-55 | JJ | denotes | STAT4-deficient |
T5386 | 56-63 | NN | denotes | T cells |
T5387 | 64-66 | TO | denotes | to |
T5388 | 67-74 | VB | denotes | produce |
T5389 | 75-80 | NN | denotes | IL-10 |
T5390 | 81-86 | MD | denotes | might |
T5391 | 87-89 | VB | denotes | be |
T5392 | 90-93 | JJ | denotes | due |
T5393 | 94-96 | TO | denotes | to |
T5394 | 97-100 | DT | denotes | the |
T5395 | 101-108 | NN | denotes | absence |
T5396 | 109-111 | IN | denotes | of |
T5397 | 112-117 | NN | denotes | IFN-γ |
T5398 | 117-118 | -COMMA- | denotes | , |
T5399 | 119-121 | IN | denotes | as |
T5400 | 122-131 | VB | denotes | suggested |
T5401 | 132-138 | IN | denotes | before |
T5402 | 139-140 | -LRB- | denotes | ( |
T5403 | 140-144 | NNP | denotes | Shaw |
T5404 | 145-151 | NNP | denotes | et al. |
T5405 | 151-152 | -COMMA- | denotes | , |
T5406 | 153-157 | CD | denotes | 2006 |
T5407 | 157-158 | -RRB- | denotes | ) |
T5408 | 158-159 | -COMMA- | denotes | , |
T5409 | 160-162 | PRP | denotes | we |
T5410 | 163-177 | VB | denotes | differentiated |
T5411 | 178-185 | NN | denotes | DO11.10 |
T5412 | 186-188 | CC | denotes | or |
T5413 | 189-196 | NN | denotes | DO11.10 |
T5414 | 197-212 | JJ | denotes | IFN-γ-deficient |
T5415 | 213-218 | JJ | denotes | naive |
T5416 | 219-223 | JJ | denotes | CD4+ |
T5417 | 224-231 | NN | denotes | T cells |
T5418 | 232-234 | IN | denotes | in |
T5419 | 235-238 | DT | denotes | the |
T5420 | 239-247 | NN | denotes | presence |
T5421 | 248-250 | IN | denotes | of |
T5422 | 251-256 | NN | denotes | IL-12 |
T5423 | 257-260 | CC | denotes | and |
T5424 | 261-271 | VB | denotes | increasing |
T5425 | 272-277 | NN | denotes | doses |
T5426 | 278-280 | IN | denotes | of |
T5427 | 281-284 | NN | denotes | OVA |
R4111 | T5380 | T5379 | arg1Of | investigate,To |
R4112 | T5383 | T5382 | arg1Of | inability,the |
R4113 | T5383 | T5384 | arg1Of | inability,of |
R4114 | T5383 | T5387 | modOf | inability,to |
R4115 | T5383 | T5390 | arg1Of | inability,might |
R4116 | T5383 | T5391 | arg1Of | inability,be |
R4117 | T5383 | T5393 | arg1Of | inability,to |
R4118 | T5386 | T5384 | arg2Of | T cells,of |
R4119 | T5386 | T5385 | arg1Of | T cells,STAT4-deficient |
R4120 | T5388 | T5387 | arg1Of | produce,to |
R4121 | T5389 | T5388 | arg2Of | IL-10,produce |
R4122 | T5391 | T5380 | arg2Of | be,investigate |
R4123 | T5391 | T5381 | arg1Of | be,whether |
R4124 | T5391 | T5390 | arg2Of | be,might |
R4125 | T5391 | T5398 | arg1Of | be,"," |
R4126 | T5391 | T5399 | arg1Of | be,as |
R4127 | T5393 | T5391 | arg2Of | to,be |
R4128 | T5393 | T5392 | arg1Of | to,due |
R4129 | T5395 | T5393 | arg2Of | absence,to |
R4130 | T5395 | T5394 | arg1Of | absence,the |
R4131 | T5395 | T5396 | arg1Of | absence,of |
R4132 | T5397 | T5396 | arg2Of | IFN-γ,of |
R4133 | T5400 | T5399 | arg2Of | suggested,as |
R4134 | T5400 | T5401 | arg1Of | suggested,before |
R4135 | T5401 | T5402 | arg1Of | before,( |
R4136 | T5404 | T5402 | arg2Of | et al.,( |
R4137 | T5404 | T5403 | arg1Of | et al.,Shaw |
R4138 | T5404 | T5405 | arg1Of | et al.,"," |
R4139 | T5406 | T5405 | arg2Of | 2006,"," |
R4140 | T5407 | T5402 | arg3Of | ),( |
R4141 | T5409 | T5410 | arg1Of | we,differentiated |
R4142 | T5410 | T5401 | arg2Of | differentiated,before |
R4143 | T5410 | T5408 | arg1Of | differentiated,"," |
R4144 | T5410 | T5418 | arg1Of | differentiated,in |
R4145 | T5415 | T5411 | arg1Of | naive,DO11.10 |
R4146 | T5415 | T5412 | arg1Of | naive,or |
R4147 | T5415 | T5413 | arg1Of | naive,DO11.10 |
R4148 | T5415 | T5414 | arg1Of | naive,IFN-γ-deficient |
R4149 | T5417 | T5410 | arg2Of | T cells,differentiated |
R4150 | T5417 | T5415 | arg1Of | T cells,naive |
R4151 | T5417 | T5416 | arg1Of | T cells,CD4+ |
R4152 | T5420 | T5418 | arg2Of | presence,in |
R4153 | T5420 | T5419 | arg1Of | presence,the |
R4154 | T5420 | T5421 | arg1Of | presence,of |
R4155 | T5422 | T5423 | arg1Of | IL-12,and |
R4156 | T5423 | T5421 | arg2Of | and,of |
R4157 | T5425 | T5423 | arg2Of | doses,and |
R4158 | T5425 | T5424 | arg1Of | doses,increasing |
R4159 | T5425 | T5426 | arg1Of | doses,of |
R4160 | T5427 | T5426 | arg2Of | OVA,of |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6045 | 0-2 | TO | denotes | To |
T6046 | 3-14 | VB | denotes | investigate |
T6047 | 15-22 | IN | denotes | whether |
T6048 | 23-26 | DT | denotes | the |
T6049 | 27-36 | NN | denotes | inability |
T6050 | 37-39 | IN | denotes | of |
T6051 | 40-55 | JJ | denotes | STAT4-deficient |
T6052 | 56-57 | NNP | denotes | T |
T6053 | 58-63 | NNS | denotes | cells |
T6054 | 64-66 | TO | denotes | to |
T6055 | 67-74 | VB | denotes | produce |
T6056 | 75-80 | NN | denotes | IL-10 |
T6057 | 81-86 | MD | denotes | might |
T6058 | 87-89 | VB | denotes | be |
T6059 | 90-93 | JJ | denotes | due |
T6060 | 94-96 | TO | denotes | to |
T6061 | 97-100 | DT | denotes | the |
T6062 | 101-108 | NN | denotes | absence |
T6063 | 109-111 | IN | denotes | of |
T6064 | 112-117 | NNP | denotes | IFN-γ |
T6065 | 117-118 | , | denotes | , |
T6066 | 119-121 | IN | denotes | as |
T6067 | 122-131 | VBN | denotes | suggested |
T6068 | 132-138 | IN | denotes | before |
T6069 | 139-140 | -LRB- | denotes | ( |
T6070 | 140-144 | NNP | denotes | Shaw |
T6071 | 145-147 | FW | denotes | et |
T6072 | 148-151 | FW | denotes | al. |
T6073 | 151-152 | , | denotes | , |
T6074 | 153-157 | CD | denotes | 2006 |
T6075 | 157-158 | -RRB- | denotes | ) |
T6076 | 158-159 | , | denotes | , |
T6077 | 160-162 | PRP | denotes | we |
T6078 | 163-177 | VBD | denotes | differentiated |
T6079 | 178-182 | NNP | denotes | DO11 |
T6080 | 182-185 | CD | denotes | .10 |
T6081 | 186-188 | CC | denotes | or |
T6082 | 189-193 | CD | denotes | DO11 |
T6083 | 193-196 | CD | denotes | .10 |
T6084 | 197-212 | JJ | denotes | IFN-γ-deficient |
T6085 | 213-218 | JJ | denotes | naive |
T6086 | 219-222 | NNP | denotes | CD4 |
T6087 | 222-223 | CD | denotes | + |
T6088 | 224-225 | NNP | denotes | T |
T6089 | 226-231 | NNS | denotes | cells |
T6090 | 232-234 | IN | denotes | in |
T6091 | 235-238 | DT | denotes | the |
T6092 | 239-247 | NN | denotes | presence |
T6093 | 248-250 | IN | denotes | of |
T6094 | 251-256 | NN | denotes | IL-12 |
T6095 | 257-260 | CC | denotes | and |
T6096 | 261-271 | VBG | denotes | increasing |
T6097 | 272-277 | NNS | denotes | doses |
T6098 | 278-280 | IN | denotes | of |
T6099 | 281-284 | NNP | denotes | OVA |
T6100 | 284-285 | . | denotes | . |
R4703 | T6045 | T6046 | aux | To,investigate |
R4704 | T6046 | T6078 | advcl | investigate,differentiated |
R4705 | T6047 | T6058 | mark | whether,be |
R4706 | T6048 | T6049 | det | the,inability |
R4707 | T6049 | T6058 | nsubj | inability,be |
R4708 | T6050 | T6049 | prep | of,inability |
R4709 | T6051 | T6052 | compound | STAT4-deficient,T |
R4710 | T6052 | T6053 | compound | T,cells |
R4711 | T6053 | T6050 | pobj | cells,of |
R4712 | T6054 | T6055 | aux | to,produce |
R4713 | T6055 | T6049 | acl | produce,inability |
R4714 | T6056 | T6055 | dobj | IL-10,produce |
R4715 | T6057 | T6058 | aux | might,be |
R4716 | T6058 | T6046 | ccomp | be,investigate |
R4717 | T6059 | T6058 | acomp | due,be |
R4718 | T6060 | T6059 | pcomp | to,due |
R4719 | T6061 | T6062 | det | the,absence |
R4720 | T6062 | T6060 | pobj | absence,to |
R4721 | T6063 | T6062 | prep | of,absence |
R4722 | T6064 | T6063 | pobj | IFN-γ,of |
R4723 | T6065 | T6058 | punct | ",",be |
R4724 | T6066 | T6067 | mark | as,suggested |
R4725 | T6067 | T6058 | advcl | suggested,be |
R4726 | T6068 | T6067 | advmod | before,suggested |
R4727 | T6069 | T6072 | punct | (,al. |
R4728 | T6070 | T6072 | compound | Shaw,al. |
R4729 | T6071 | T6072 | nmod | et,al. |
R4730 | T6072 | T6046 | prep | al.,investigate |
R4731 | T6073 | T6072 | punct | ",",al. |
R4732 | T6074 | T6072 | npadvmod | 2006,al. |
R4733 | T6075 | T6072 | punct | ),al. |
R4734 | T6076 | T6078 | punct | ",",differentiated |
R4735 | T6077 | T6078 | nsubj | we,differentiated |
R4736 | T6078 | T6078 | ROOT | differentiated,differentiated |
R4737 | T6079 | T6078 | dobj | DO11,differentiated |
R4738 | T6080 | T6089 | nummod | .10,cells |
R4739 | T6081 | T6080 | cc | or,.10 |
R4740 | T6082 | T6089 | nummod | DO11,cells |
R4741 | T6083 | T6084 | nummod | .10,IFN-γ-deficient |
R4742 | T6084 | T6085 | npadvmod | IFN-γ-deficient,naive |
R4743 | T6085 | T6089 | amod | naive,cells |
R4744 | T6086 | T6089 | compound | CD4,cells |
R4745 | T6087 | T6089 | nummod | +,cells |
R4746 | T6088 | T6089 | compound | T,cells |
R4747 | T6089 | T6078 | conj | cells,differentiated |
R4748 | T6090 | T6089 | prep | in,cells |
R4749 | T6091 | T6092 | det | the,presence |
R4750 | T6092 | T6090 | pobj | presence,in |
R4751 | T6093 | T6092 | prep | of,presence |
R4752 | T6094 | T6093 | pobj | IL-12,of |
R4753 | T6095 | T6089 | cc | and,cells |
R4754 | T6096 | T6097 | amod | increasing,doses |
R4755 | T6097 | T6089 | conj | doses,cells |
R4756 | T6098 | T6097 | prep | of,doses |
R4757 | T6099 | T6098 | pobj | OVA,of |
R4758 | T6100 | T6078 | punct | .,differentiated |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6355 | 75-80 | http://purl.obolibrary.org/obo/GO_0005141 | denotes | IL-10 |
T6378 | 251-256 | http://purl.obolibrary.org/obo/GO_0005143 | denotes | IL-12 |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6396 | 58-63 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
T6397 | 226-231 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T5030 | 0-285 | Sentence | denotes | To investigate whether the inability of STAT4-deficient T cells to produce IL-10 might be due to the absence of IFN-γ, as suggested before (Shaw et al., 2006), we differentiated DO11.10 or DO11.10 IFN-γ-deficient naive CD4+ T cells in the presence of IL-12 and increasing doses of OVA. |
T57 | 0-285 | Sentence | denotes | To investigate whether the inability of STAT4-deficient T cells to produce IL-10 might be due to the absence of IFN-γ, as suggested before (Shaw et al., 2006), we differentiated DO11.10 or DO11.10 IFN-γ-deficient naive CD4+ T cells in the presence of IL-12 and increasing doses of OVA. |
events-check-again
Id | Subject | Object | Predicate | Lexical cue | Speculation |
---|---|---|---|---|---|
T6750 | 27-36 | Negative_regulation | denotes | inability | |
T6751 | 40-45 | Protein | denotes | STAT4 | |
T6752 | 46-55 | Negative_regulation | denotes | deficient | |
T6753 | 67-74 | Gene_expression | denotes | produce | |
T6754 | 75-80 | Protein | denotes | IL-10 | |
T6755 | 90-93 | Positive_regulation | denotes | due | true |
T6756 | 101-108 | Negative_regulation | denotes | absence | |
T6757 | 112-117 | Protein | denotes | IFN-γ | |
T6758 | 197-202 | Protein | denotes | IFN-γ | |
T6759 | 203-212 | Negative_regulation | denotes | deficient | |
T6760 | 219-222 | Protein | denotes | CD4 | |
T6761 | 251-256 | Protein | denotes | IL-12 | |
T6762 | 281-284 | Protein | denotes | OVA | |
R5151 | T6750 | T6755 | themeOf | inability,due | |
R5152 | T6751 | T6752 | themeOf | STAT4,deficient | |
R5153 | T6752 | T6750 | causeOf | deficient,inability | |
R5154 | T6753 | T6750 | themeOf | produce,inability | |
R5156 | T6754 | T6753 | themeOf | IL-10,produce | |
R5157 | T6756 | T6755 | causeOf | absence,due | |
R5158 | T6757 | T6756 | themeOf | IFN-γ,absence | |
R5159 | T6758 | T6759 | themeOf | IFN-γ,deficient |
bionlp-st-ge-2016-reference-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T6865 | 40-45 | Protein | denotes | STAT4 |
T6866 | 75-80 | Protein | denotes | IL-10 |
T6867 | 112-117 | Protein | denotes | IFN-γ |
T6868 | 189-202 | Protein | denotes | DO11.10 IFN-γ |
T6869 | 219-223 | Protein | denotes | CD4+ |
T6870 | 46-55 | Negative_regulation | denotes | deficient |
T6871 | 67-74 | Gene_expression | denotes | produce |
T6872 | 101-108 | Negative_regulation | denotes | absence |
T6873 | 203-212 | Negative_regulation | denotes | deficient |
T6874 | 27-36 | Negative_regulation | denotes | inability |
R5233 | T6865 | T6870 | themeOf | STAT4,deficient |
R5234 | T6866 | T6871 | themeOf | IL-10,produce |
R5235 | T6867 | T6872 | themeOf | IFN-γ,absence |
R5236 | T6868 | T6873 | themeOf | DO11.10 IFN-γ,deficient |
R5237 | T6871 | T6874 | themeOf | produce,inability |
test2
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4835 | 40-45 | Protein | denotes | STAT4 |
T4836 | 46-55 | Negative_regulation | denotes | deficient |
T4837 | 67-74 | Gene_expression | denotes | produce |
T4838 | 75-80 | Protein | denotes | IL-10 |
T4839 | 90-93 | Positive_regulation | denotes | due |
T4840 | 101-108 | Negative_regulation | denotes | absence |
T4841 | 112-117 | Protein | denotes | IFN-γ |
T4842 | 197-202 | Protein | denotes | IFN-γ |
T4843 | 203-212 | Negative_regulation | denotes | deficient |
T4844 | 219-222 | Protein | denotes | CD4 |
T4845 | 251-256 | Protein | denotes | IL-12 |
T4846 | 281-284 | Protein | denotes | OVA |
R3652 | T4835 | T4836 | themeOf | STAT4,deficient |
R3653 | T4837 | T4839 | themeOf | produce,due |
R3654 | T4838 | T4837 | themeOf | IL-10,produce |
R3655 | T4840 | T4839 | causeOf | absence,due |
R3656 | T4841 | T4840 | themeOf | IFN-γ,absence |
R3657 | T4842 | T4843 | themeOf | IFN-γ,deficient |