PMC:2725788 / 20711-21549 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/2725788","sourcedb":"PMC","sourceid":"2725788","source_url":"http://www.ncbi.nlm.nih.gov/pmc/2725788","text":"Figure 1 Alignment of HERV-W LTR U3 promoter. ERVWE1[5′LTR] and ERVWE1[3′LTR] U3 region allelic forms were previously determined on DNA amplified from 24 individuals (e.g. -132A. individual 132, allele A), i.e. 48 sequences.45 HW_12[solo LTR] and HW_4[5′LTR] allelic forms derive from the annotated genome sequence (-A, reference allele; -B, alternative allele; SNP ID, rs6489086). Proportion of each allelic form is given in hooks (e.g. [3], 3 of the 48 sequences hold this allelic form; [nd], not determined). CAAT box, TATA box and transcription binding sites are indicated. Effective transcription factor binding sites are underlined; putative transcription factor binding sites are marked by interrupted lines. CpG sites are indicated by gray background, their position in the U3 region is given relative to ERVWE1 5′LTR sequence.\n\n","tracks":[{"project":"2_test","denotations":[{"id":"19561344-14757826-25963815","span":{"begin":225,"end":227},"obj":"14757826"}],"attributes":[{"subj":"19561344-14757826-25963815","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"2_test","color":"#9fec93","default":true}]}]}}