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PMC:2674207 / 9135-9425 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
19436703-15350979-86274465 80-82 15350979 denotes 15
19436703-17277157-86274466 286-288 17277157 denotes 12
T15669 80-82 15350979 denotes 15
T56526 286-288 17277157 denotes 12

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1663 0-3 DT denotes The
T1664 4-12 NN denotes affinity
T1665 13-15 IN denotes of
T1666 16-19 DT denotes the
T1667 20-34 JJ denotes importin-α–NLS
T1668 35-46 NN denotes interaction
T1669 47-49 VB denotes is
T1670 50-59 VB denotes regulated
T1671 60-62 IN denotes by
T1672 63-78 NN denotes phosphorylation
T1673 79-80 -LRB- denotes [
T1674 80-82 CD denotes 15
T1675 82-83 -RRB- denotes ]
T1676 83-84 -COMMA- denotes ,
T1677 85-88 CC denotes and
T1678 89-91 PRP denotes we
T1679 92-96 VB denotes have
T1680 97-102 VB denotes shown
T1681 103-107 IN denotes that
T1682 108-111 NN denotes p38
T1683 112-129 JJ denotes mitogen-activated
T1684 130-137 NN denotes protein
T1685 138-144 NN denotes kinase
T1686 145-146 -LRB- denotes (
T1687 146-150 NN denotes MAPK
T1688 150-151 -RRB- denotes )
T1689 152-157 VB denotes plays
T1690 158-159 DT denotes a
T1691 160-168 JJ denotes critical
T1692 169-173 NN denotes role
T1693 174-176 IN denotes in
T1694 177-192 VB denotes phosphorylating
T1695 193-199 NN denotes GATA-3
T1696 200-202 TO denotes to
T1697 203-210 VB denotes enhance
T1698 211-214 PRP-DOLLAR- denotes its
T1699 215-226 NN denotes interaction
T1700 227-231 IN denotes with
T1701 232-242 JJ denotes importin-α
T1702 243-246 CC denotes and
T1703 247-257 JJ denotes subsequent
T1704 258-267 NN denotes transport
T1705 268-272 IN denotes into
T1706 273-276 DT denotes the
T1707 277-284 NN denotes nucleus
T1708 285-286 -LRB- denotes [
T1709 286-288 CD denotes 12
T1710 288-289 -RRB- denotes ]
R1395 T1664 T1663 arg1Of affinity,The
R1396 T1664 T1665 arg1Of affinity,of
R1397 T1664 T1669 arg1Of affinity,is
R1398 T1664 T1670 arg2Of affinity,regulated
R1399 T1668 T1665 arg2Of interaction,of
R1400 T1668 T1666 arg1Of interaction,the
R1401 T1668 T1667 arg1Of interaction,importin-α–NLS
R1402 T1670 T1669 arg2Of regulated,is
R1403 T1670 T1677 arg1Of regulated,and
R1404 T1672 T1670 arg1Of phosphorylation,regulated
R1405 T1672 T1671 arg2Of phosphorylation,by
R1406 T1672 T1673 arg1Of phosphorylation,[
R1407 T1674 T1673 arg2Of 15,[
R1408 T1675 T1673 arg3Of ],[
R1409 T1677 T1676 arg1Of and,","
R1410 T1678 T1679 arg1Of we,have
R1411 T1678 T1680 arg1Of we,shown
R1412 T1680 T1677 arg2Of shown,and
R1413 T1680 T1679 arg2Of shown,have
R1414 T1685 T1682 arg1Of kinase,p38
R1415 T1685 T1683 arg1Of kinase,mitogen-activated
R1416 T1685 T1684 arg1Of kinase,protein
R1417 T1685 T1686 arg1Of kinase,(
R1418 T1685 T1689 arg1Of kinase,plays
R1419 T1687 T1686 arg2Of MAPK,(
R1420 T1688 T1686 arg3Of ),(
R1421 T1689 T1680 arg2Of plays,shown
R1422 T1689 T1681 arg1Of plays,that
R1423 T1689 T1693 arg1Of plays,in
R1424 T1689 T1708 arg1Of plays,[
R1425 T1692 T1689 arg2Of role,plays
R1426 T1692 T1690 arg1Of role,a
R1427 T1692 T1691 arg1Of role,critical
R1428 T1694 T1693 arg2Of phosphorylating,in
R1429 T1694 T1696 modOf phosphorylating,to
R1430 T1695 T1694 arg2Of GATA-3,phosphorylating
R1431 T1697 T1696 arg1Of enhance,to
R1432 T1699 T1697 arg2Of interaction,enhance
R1433 T1699 T1698 arg1Of interaction,its
R1434 T1699 T1700 arg1Of interaction,with
R1435 T1699 T1705 arg1Of interaction,into
R1436 T1701 T1702 arg1Of importin-α,and
R1437 T1703 T1702 arg2Of subsequent,and
R1438 T1704 T1700 arg2Of transport,with
R1439 T1704 T1701 arg1Of transport,importin-α
R1440 T1704 T1703 arg1Of transport,subsequent
R1441 T1707 T1705 arg2Of nucleus,into
R1442 T1707 T1706 arg1Of nucleus,the
R1443 T1709 T1708 arg2Of 12,[
R1444 T1710 T1708 arg3Of ],[

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T2218 211-214 Anaphor denotes its
T2219 193-199 Antecedent denotes GATA-3
R1963 T2218 T2219 boundBy its,GATA-3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2634 0-3 DT denotes The
T2635 4-12 NN denotes affinity
T2636 13-15 IN denotes of
T2637 16-19 DT denotes the
T2638 20-30 JJ denotes importin-α
T2639 31-34 NNP denotes NLS
T2640 35-46 NN denotes interaction
T2641 47-49 VBZ denotes is
T2642 50-59 VBN denotes regulated
T2643 60-62 IN denotes by
T2644 63-78 NN denotes phosphorylation
T2645 79-80 NNP denotes [
T2646 80-82 CD denotes 15
T2647 82-83 NNP denotes ]
T2648 83-84 , denotes ,
T2649 85-88 CC denotes and
T2650 89-91 PRP denotes we
T2651 92-96 VBP denotes have
T2652 97-102 VBN denotes shown
T2653 103-107 IN denotes that
T2654 108-111 CD denotes p38
T2655 112-129 JJ denotes mitogen-activated
T2656 130-137 NN denotes protein
T2657 138-144 NN denotes kinase
T2658 145-146 -LRB- denotes (
T2659 146-150 NNP denotes MAPK
T2660 150-151 -RRB- denotes )
T2661 152-157 VBZ denotes plays
T2662 158-159 DT denotes a
T2663 160-168 JJ denotes critical
T2664 169-173 NN denotes role
T2665 174-176 IN denotes in
T2666 177-192 VBG denotes phosphorylating
T2667 193-199 NN denotes GATA-3
T2668 200-202 TO denotes to
T2669 203-210 VB denotes enhance
T2670 211-214 PRP$ denotes its
T2671 215-226 NN denotes interaction
T2672 227-231 IN denotes with
T2673 232-242 JJ denotes importin-α
T2674 243-246 CC denotes and
T2675 247-257 JJ denotes subsequent
T2676 258-267 NN denotes transport
T2677 268-272 IN denotes into
T2678 273-276 DT denotes the
T2679 277-284 NN denotes nucleus
T2680 285-286 NNP denotes [
T2681 286-288 CD denotes 12
T2682 288-289 NNP denotes ]
T2683 289-290 . denotes .
R2292 T2634 T2635 det The,affinity
R2293 T2635 T2642 nsubjpass affinity,regulated
R2295 T2636 T2635 prep of,affinity
R2296 T2637 T2638 det the,importin-α
R2297 T2638 T2636 pobj importin-α,of
R2299 T2639 T2640 compound NLS,interaction
R2300 T2640 T2642 nsubjpass interaction,regulated
R2301 T2641 T2642 auxpass is,regulated
R2303 T2642 T2642 ROOT regulated,regulated
R2304 T2643 T2642 agent by,regulated
R2305 T2644 T2645 compound phosphorylation,[
R2307 T2645 T2647 nmod [,]
R2308 T2646 T2647 nummod 15,]
R2309 T2647 T2643 pobj ],by
R2311 T2648 T2642 punct ",",regulated
R2312 T2649 T2642 cc and,regulated
R2315 T2650 T2652 nsubj we,shown
R2317 T2651 T2652 aux have,shown
R2318 T2652 T2642 conj shown,regulated
R2319 T2653 T2661 mark that,plays
R2321 T2654 T2657 nummod p38,kinase
R2322 T2655 T2657 amod mitogen-activated,kinase
R2323 T2656 T2657 compound protein,kinase
R2325 T2657 T2661 nsubj kinase,plays
R2326 T2658 T2659 punct (,MAPK
R2328 T2659 T2657 appos MAPK,kinase
R2329 T2660 T2657 punct ),kinase
R2331 T2661 T2652 ccomp plays,shown
R2332 T2662 T2664 det a,role
R2333 T2663 T2664 amod critical,role
R2335 T2664 T2661 dobj role,plays
R2336 T2665 T2664 prep in,role
R2358 T2680 T2682 nmod [,]
R2359 T2681 T2682 nummod 12,]
R2360 T2682 T2679 appos ],nucleus
R2362 T2683 T2652 punct .,shown
R2339 T2666 T2665 pcomp phosphorylating,in
R2340 T2667 T2666 dobj GATA-3,phosphorylating
R2342 T2668 T2669 aux to,enhance
R2343 T2669 T2661 advcl enhance,plays
R2344 T2670 T2671 poss its,interaction
R2346 T2671 T2669 dobj interaction,enhance
R2347 T2672 T2671 prep with,interaction
R2348 T2673 T2676 amod importin-α,transport
R2349 T2674 T2673 cc and,importin-α
R2351 T2675 T2673 conj subsequent,importin-α
R2352 T2676 T2672 pobj transport,with
R2354 T2677 T2669 prep into,enhance
R2355 T2678 T2679 det the,nucleus
R2356 T2679 T2677 pobj nucleus,into

GO-BP

Id Subject Object Predicate Lexical cue
T3241 258-267 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T3243 258-284 http://purl.obolibrary.org/obo/GO_0051169 denotes transport into the nucleus
T3251 63-78 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T3253 108-111 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T3254 146-150 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T3255 120-144 http://purl.obolibrary.org/obo/GO_0034199 denotes activated protein kinase
T3256 120-144 http://purl.obolibrary.org/obo/GO_0032147 denotes activated protein kinase
T3257 120-144 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinase
T3258 120-144 http://purl.obolibrary.org/obo/GO_0032111 denotes activated protein kinase

GO-MF

Id Subject Object Predicate Lexical cue
T3281 108-111 http://purl.obolibrary.org/obo/GO_0004707 denotes p38
T3282 146-150 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK
T3283 120-144 http://purl.obolibrary.org/obo/GO_0030295 denotes activated protein kinase

GO-CC

Id Subject Object Predicate Lexical cue
T3320 277-284 http://purl.obolibrary.org/obo/GO_0005634 denotes nucleus

sentences

Id Subject Object Predicate Lexical cue
T1306 0-290 Sentence denotes The affinity of the importin-α–NLS interaction is regulated by phosphorylation [15], and we have shown that p38 mitogen-activated protein kinase (MAPK) plays a critical role in phosphorylating GATA-3 to enhance its interaction with importin-α and subsequent transport into the nucleus [12].
T63 0-290 Sentence denotes The affinity of the importin-α–NLS interaction is regulated by phosphorylation [15], and we have shown that p38 mitogen-activated protein kinase (MAPK) plays a critical role in phosphorylating GATA-3 to enhance its interaction with importin-α and subsequent transport into the nucleus [12].

events-check-again

Id Subject Object Predicate Lexical cue
T3594 169-173 Regulation denotes role
T3595 177-192 Phosphorylation denotes phosphorylating
T3596 193-199 Protein denotes GATA-3
T3597 203-210 Positive_regulation denotes enhance
T3598 215-226 Binding denotes interaction
R3079 T3595 T3594 themeOf phosphorylating,role
R3080 T3595 T3597 causeOf phosphorylating,enhance
R3081 T3596 T3595 themeOf GATA-3,phosphorylating
R3082 T3596 T3598 themeOf GATA-3,interaction
R3084 T3598 T3597 themeOf interaction,enhance

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1219 169-173 Regulation denotes role
T1220 177-192 Phosphorylation denotes phosphorylating
T1221 193-199 Protein denotes GATA-3
T1222 203-210 Positive_regulation denotes enhance
T1223 215-226 Binding denotes interaction
R981 T1220 T1219 themeOf phosphorylating,role
R982 T1220 T1222 causeOf phosphorylating,enhance
R983 T1221 T1220 themeOf GATA-3,phosphorylating
R984 T1221 T1223 themeOf GATA-3,interaction
R985 T1223 T1222 themeOf interaction,enhance

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T2249 108-111 Q16539 denotes p38
T2250 108-111 P53778 denotes p38
T2251 108-111 Q15759 denotes p38
T2252 108-111 O15264 denotes p38
T2253 112-144 P28482 denotes mitogen-activated protein kinase
T2254 112-144 P27361 denotes mitogen-activated protein kinase
T2255 193-199 P23771 denotes GATA-3

test2

Id Subject Object Predicate Lexical cue
T1112 50-59 Regulation denotes regulated
T1113 63-78 Phosphorylation denotes phosphorylation
T1114 169-173 Regulation denotes role
T1115 177-192 Phosphorylation denotes phosphorylating
T1116 193-199 Protein denotes GATA-3
T1117 203-210 Positive_regulation denotes enhance
T1118 215-226 Binding denotes interaction
R910 T1115 T1114 themeOf phosphorylating,role
R911 T1116 T1115 themeOf GATA-3,phosphorylating
R912 T1116 T1117 causeOf GATA-3,enhance
R913 T1116 T1118 themeOf GATA-3,interaction
R914 T1118 T1117 themeOf interaction,enhance