PMC:2674207 / 466-658 JSONTXT

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    pmc-enju-pas

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    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T426","span":{"begin":61,"end":74},"obj":"Anaphor"},{"id":"T427","span":{"begin":75,"end":93},"obj":"Antecedent"},{"id":"T428","span":{"begin":95,"end":99},"obj":"Antecedent"},{"id":"T429","span":{"begin":105,"end":110},"obj":"Antecedent"}],"relations":[{"id":"R768","pred":"boundBy","subj":"T426","obj":"T427"},{"id":"R777","pred":"boundBy","subj":"T426","obj":"T428"},{"id":"R778","pred":"boundBy","subj":"T426","obj":"T429"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T477","span":{"begin":29,"end":31},"obj":"IN"},{"id":"T478","span":{"begin":32,"end":42},"obj":"VBG"},{"id":"T479","span":{"begin":43,"end":46},"obj":"DT"},{"id":"T480","span":{"begin":47,"end":57},"obj":"NN"},{"id":"T481","span":{"begin":58,"end":60},"obj":"IN"},{"id":"T482","span":{"begin":61,"end":64},"obj":"DT"},{"id":"T483","span":{"begin":65,"end":74},"obj":"NNS"},{"id":"T484","span":{"begin":75,"end":86},"obj":"VBP"},{"id":"T485","span":{"begin":87,"end":88},"obj":"-LRB-"},{"id":"T486","span":{"begin":88,"end":90},"obj":"NNP"},{"id":"T487","span":{"begin":90,"end":91},"obj":"-RRB-"},{"id":"T488","span":{"begin":91,"end":93},"obj":"CD"},{"id":"T489","span":{"begin":93,"end":94},"obj":","},{"id":"T490","span":{"begin":95,"end":99},"obj":"NN"},{"id":"T491","span":{"begin":99,"end":100},"obj":","},{"id":"T492","span":{"begin":101,"end":104},"obj":"CC"},{"id":"T493","span":{"begin":105,"end":110},"obj":"NN"},{"id":"T494","span":{"begin":111,"end":115},"obj":"IN"},{"id":"T495","span":{"begin":116,"end":117},"obj":"NNP"},{"id":"T496","span":{"begin":118,"end":126},"obj":"JJ"},{"id":"T497","span":{"begin":127,"end":128},"obj":"-LRB-"},{"id":"T498","span":{"begin":128,"end":131},"obj":"JJ"},{"id":"T499","span":{"begin":131,"end":132},"obj":"-RRB-"},{"id":"T500","span":{"begin":133,"end":138},"obj":"NNS"},{"id":"T501","span":{"begin":139,"end":142},"obj":"CC"},{"id":"T502","span":{"begin":143,"end":152},"obj":"RB"},{"id":"T503","span":{"begin":153,"end":155},"obj":"VBZ"},{"id":"T504","span":{"begin":156,"end":157},"obj":"DT"},{"id":"T505","span":{"begin":158,"end":161},"obj":"JJ"},{"id":"T506","span":{"begin":162,"end":170},"obj":"NN"},{"id":"T507","span":{"begin":171,"end":173},"obj":"IN"},{"id":"T508","span":{"begin":174,"end":182},"obj":"JJ"},{"id":"T509","span":{"begin":183,"end":191},"obj":"NNS"},{"id":"T510","span":{"begin":191,"end":192},"obj":"."},{"id":"T472","span":{"begin":0,"end":6},"obj":"NNP"},{"id":"T473","span":{"begin":7,"end":12},"obj":"VBZ"},{"id":"T474","span":{"begin":13,"end":14},"obj":"DT"},{"id":"T475","span":{"begin":15,"end":23},"obj":"JJ"},{"id":"T476","span":{"begin":24,"end":28},"obj":"NN"}],"relations":[{"id":"R374","pred":"nmod","subj":"T484","obj":"T488"},{"id":"R375","pred":"prep","subj":"T477","obj":"T476"},{"id":"R376","pred":"pcomp","subj":"T478","obj":"T477"},{"id":"R377","pred":"det","subj":"T479","obj":"T480"},{"id":"R378","pred":"dobj","subj":"T480","obj":"T478"},{"id":"R379","pred":"punct","subj":"T485","obj":"T484"},{"id":"R380","pred":"prep","subj":"T481","obj":"T480"},{"id":"R381","pred":"det","subj":"T482","obj":"T483"},{"id":"R382","pred":"pobj","subj":"T483","obj":"T481"},{"id":"R383","pred":"appos","subj":"T486","obj":"T484"},{"id":"R384","pred":"punct","subj":"T487","obj":"T484"},{"id":"R385","pred":"npadvmod","subj":"T488","obj":"T473"},{"id":"R386","pred":"punct","subj":"T489","obj":"T488"},{"id":"R387","pred":"conj","subj":"T490","obj":"T488"},{"id":"R797","pred":"nsubj","subj":"T472","obj":"T473"},{"id":"R798","pred":"ROOT","subj":"T473","obj":"T473"},{"id":"R799","pred":"det","subj":"T474","obj":"T476"},{"id":"R800","pred":"amod","subj":"T475","obj":"T476"},{"id":"R801","pred":"dobj","subj":"T476","obj":"T473"},{"id":"R388","pred":"punct","subj":"T491","obj":"T490"},{"id":"R389","pred":"cc","subj":"T492","obj":"T490"},{"id":"R390","pred":"conj","subj":"T493","obj":"T490"},{"id":"R391","pred":"prep","subj":"T494","obj":"T490"},{"id":"R392","pred":"compound","subj":"T495","obj":"T496"},{"id":"R393","pred":"pobj","subj":"T496","obj":"T494"},{"id":"R394","pred":"punct","subj":"T497","obj":"T496"},{"id":"R395","pred":"appos","subj":"T498","obj":"T496"},{"id":"R396","pred":"punct","subj":"T499","obj":"T496"},{"id":"R397","pred":"pobj","subj":"T500","obj":"T494"},{"id":"R399","pred":"cc","subj":"T501","obj":"T473"},{"id":"R402","pred":"advmod","subj":"T502","obj":"T503"},{"id":"R406","pred":"conj","subj":"T503","obj":"T473"},{"id":"R407","pred":"det","subj":"T504","obj":"T506"},{"id":"R408","pred":"amod","subj":"T505","obj":"T506"},{"id":"R409","pred":"attr","subj":"T506","obj":"T503"},{"id":"R410","pred":"prep","subj":"T507","obj":"T506"},{"id":"R411","pred":"amod","subj":"T508","obj":"T509"},{"id":"R412","pred":"pobj","subj":"T509","obj":"T507"},{"id":"R413","pred":"punct","subj":"T510","obj":"T473"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T770","span":{"begin":88,"end":93},"obj":"http://purl.obolibrary.org/obo/GO_0005136"},{"id":"T771","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/GO_0005137"},{"id":"T772","span":{"begin":105,"end":110},"obj":"http://purl.obolibrary.org/obo/GO_0005144"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T778","span":{"begin":133,"end":138},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    sentences

    {"project":"sentences","denotations":[{"id":"T137","span":{"begin":0,"end":192},"obj":"Sentence"},{"id":"T7","span":{"begin":0,"end":192},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T879","span":{"begin":0,"end":6},"obj":"Protein"},{"id":"T880","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T881","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T882","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T883","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T884","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T885","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T886","span":{"begin":75,"end":93},"obj":"Protein"},{"id":"T887","span":{"begin":95,"end":99},"obj":"Protein"},{"id":"T888","span":{"begin":105,"end":110},"obj":"Protein"}],"relations":[{"id":"R684","pred":"themeOf","subj":"T884","obj":"T882"},{"id":"R686","pred":"themeOf","subj":"T885","obj":"T881"},{"id":"R688","pred":"themeOf","subj":"T886","obj":"T884"},{"id":"R689","pred":"themeOf","subj":"T887","obj":"T883"},{"id":"R690","pred":"themeOf","subj":"T888","obj":"T885"},{"id":"R760","pred":"causeOf","subj":"T879","obj":"T882"},{"id":"R762","pred":"causeOf","subj":"T879","obj":"T880"},{"id":"R763","pred":"causeOf","subj":"T879","obj":"T881"},{"id":"R766","pred":"themeOf","subj":"T883","obj":"T880"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T923","span":{"begin":0,"end":6},"obj":"Protein"},{"id":"T924","span":{"begin":75,"end":99},"obj":"Protein"},{"id":"T925","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T926","span":{"begin":32,"end":42},"obj":"Regulation"}],"relations":[{"id":"R739","pred":"causeOf","subj":"T923","obj":"T926"},{"id":"R740","pred":"themeOf","subj":"T924","obj":"T925"},{"id":"R742","pred":"themeOf","subj":"T925","obj":"T926"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T96","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T97","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T98","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T99","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T100","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T101","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T102","span":{"begin":75,"end":93},"obj":"Protein"},{"id":"T103","span":{"begin":95,"end":99},"obj":"Protein"},{"id":"T104","span":{"begin":105,"end":110},"obj":"Protein"},{"id":"T95","span":{"begin":0,"end":6},"obj":"Protein"}],"relations":[{"id":"R71","pred":"themeOf","subj":"T99","obj":"T96"},{"id":"R72","pred":"themeOf","subj":"T100","obj":"T98"},{"id":"R74","pred":"themeOf","subj":"T102","obj":"T100"},{"id":"R774","pred":"causeOf","subj":"T95","obj":"T98"},{"id":"R775","pred":"causeOf","subj":"T95","obj":"T96"},{"id":"R73","pred":"themeOf","subj":"T101","obj":"T97"},{"id":"R75","pred":"themeOf","subj":"T103","obj":"T99"},{"id":"R76","pred":"themeOf","subj":"T104","obj":"T101"},{"id":"R776","pred":"causeOf","subj":"T95","obj":"T97"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T431","span":{"begin":0,"end":6},"obj":"P23771"},{"id":"T432","span":{"begin":95,"end":99},"obj":"P05113"},{"id":"T433","span":{"begin":105,"end":110},"obj":"P35225"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}

    test2

    {"project":"test2","denotations":[{"id":"T52","span":{"begin":0,"end":6},"obj":"Protein"},{"id":"T53","span":{"begin":24,"end":28},"obj":"Regulation"},{"id":"T54","span":{"begin":32,"end":42},"obj":"Regulation"},{"id":"T55","span":{"begin":47,"end":57},"obj":"Gene_expression"},{"id":"T56","span":{"begin":75,"end":93},"obj":"Protein"},{"id":"T57","span":{"begin":95,"end":99},"obj":"Protein"},{"id":"T58","span":{"begin":105,"end":110},"obj":"Protein"}],"relations":[{"id":"R42","pred":"causeOf","subj":"T52","obj":"T54"},{"id":"R43","pred":"causeOf","subj":"T52","obj":"T53"},{"id":"R44","pred":"themeOf","subj":"T55","obj":"T54"},{"id":"R45","pred":"themeOf","subj":"T56","obj":"T55"},{"id":"R46","pred":"themeOf","subj":"T57","obj":"T55"},{"id":"R47","pred":"themeOf","subj":"T58","obj":"T55"}],"text":"GATA-3 plays a critical role in regulating the expression of the cytokines interleukin (IL)-4, IL-5, and IL-13 from T helper-2 (Th2) cells and therefore is a key mediator of allergic diseases."}