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PMC:2674207 / 40821-41052 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
19436703-17277157-86274500 227-229 17277157 denotes 12
T58723 227-229 17277157 denotes 12

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13487 0-2 PRP denotes We
T13488 3-7 VB denotes have
T13489 8-12 RB denotes also
T13490 13-23 RB denotes previously
T13491 24-32 VB denotes reported
T13492 33-37 IN denotes that
T13493 38-44 NN denotes GATA-3
T13494 45-54 NN denotes knockdown
T13495 55-60 VB denotes using
T13496 61-66 NN denotes siRNA
T13497 67-74 VB denotes results
T13498 75-77 IN denotes in
T13499 78-89 NN denotes suppression
T13500 90-92 IN denotes of
T13501 93-117 JJ denotes anti-CD3/CD28–stimulated
T13502 118-127 NN denotes IL-4/IL-5
T13503 128-132 NN denotes mRNA
T13504 133-142 NN denotes induction
T13505 142-143 -COMMA- denotes ,
T13506 144-148 RB denotes thus
T13507 149-160 VB denotes implicating
T13508 161-163 DT denotes an
T13509 164-173 JJ denotes essential
T13510 174-178 NN denotes role
T13511 179-182 IN denotes for
T13512 183-189 NN denotes GATA-3
T13513 190-192 IN denotes in
T13514 193-196 DT denotes the
T13515 197-210 NN denotes transcription
T13516 211-213 IN denotes of
T13517 214-219 DT denotes these
T13518 220-225 NN denotes genes
T13519 226-227 -LRB- denotes [
T13520 227-229 CD denotes 12
T13521 229-230 -RRB- denotes ]
R11560 T13487 T13488 arg1Of We,have
R11561 T13487 T13491 arg1Of We,reported
R11562 T13491 T13488 arg2Of reported,have
R11563 T13491 T13489 arg1Of reported,also
R11564 T13491 T13490 arg1Of reported,previously
R11565 T13494 T13493 arg1Of knockdown,GATA-3
R11566 T13494 T13495 arg1Of knockdown,using
R11567 T13494 T13497 arg1Of knockdown,results
R11568 T13496 T13495 arg2Of siRNA,using
R11569 T13497 T13491 arg2Of results,reported
R11570 T13497 T13492 arg1Of results,that
R11571 T13497 T13498 arg1Of results,in
R11572 T13497 T13505 arg1Of results,","
R11573 T13497 T13507 modOf results,implicating
R11574 T13499 T13498 arg2Of suppression,in
R11575 T13499 T13500 arg1Of suppression,of
R11576 T13504 T13500 arg2Of induction,of
R11577 T13504 T13501 arg1Of induction,anti-CD3/CD28–stimulated
R11578 T13504 T13502 arg1Of induction,IL-4/IL-5
R11579 T13504 T13503 arg1Of induction,mRNA
R11580 T13507 T13506 arg1Of implicating,thus
R11581 T13507 T13519 arg1Of implicating,[
R11582 T13510 T13507 arg2Of role,implicating
R11583 T13510 T13508 arg1Of role,an
R11584 T13510 T13509 arg1Of role,essential
R11585 T13510 T13511 arg1Of role,for
R11586 T13510 T13513 arg1Of role,in
R11587 T13512 T13511 arg2Of GATA-3,for
R11588 T13515 T13513 arg2Of transcription,in
R11589 T13515 T13514 arg1Of transcription,the
R11590 T13515 T13516 arg1Of transcription,of
R11591 T13518 T13516 arg2Of genes,of
R11592 T13518 T13517 arg1Of genes,these
R11593 T13520 T13519 arg2Of 12,[
R11594 T13521 T13519 arg3Of ],[

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T14223 214-225 Anaphor denotes these genes
T14224 118-122 Antecedent denotes IL-4
T14225 123-127 Antecedent denotes IL-5
R12319 T14223 T14224 boundBy these genes,IL-4
R12320 T14223 T14225 boundBy these genes,IL-5

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14449 0-2 PRP denotes We
T14450 3-7 VBP denotes have
T14451 8-12 RB denotes also
T14452 13-23 RB denotes previously
T14453 24-32 VBN denotes reported
T14454 33-37 IN denotes that
T14455 38-44 JJ denotes GATA-3
T14456 45-54 NN denotes knockdown
T14457 55-60 VBG denotes using
T14458 61-66 NNP denotes siRNA
T14459 67-74 NNS denotes results
T14460 75-77 IN denotes in
T14461 78-89 NN denotes suppression
T14462 90-92 IN denotes of
T14463 93-101 JJ denotes anti-CD3
T14464 101-102 NN denotes /
T14465 102-106 CD denotes CD28
T14466 107-117 VBD denotes stimulated
T14467 118-122 NN denotes IL-4
T14468 122-123 NN denotes /
T14469 123-127 NN denotes IL-5
T14470 128-132 NNP denotes mRNA
T14471 133-142 NN denotes induction
T14472 142-143 , denotes ,
T14473 144-148 RB denotes thus
T14474 149-160 VBG denotes implicating
T14475 161-163 DT denotes an
T14476 164-173 JJ denotes essential
T14477 174-178 NN denotes role
T14478 179-182 IN denotes for
T14479 183-189 NNP denotes GATA-3
T14480 190-192 IN denotes in
T14481 193-196 DT denotes the
T14482 197-210 NN denotes transcription
T14483 211-213 IN denotes of
T14484 214-219 DT denotes these
T14485 220-225 NNS denotes genes
T14486 226-227 NNP denotes [
T14487 227-229 CD denotes 12
T14488 229-230 NNP denotes ]
T14489 230-231 . denotes .
R12461 T14449 T14453 nsubj We,reported
R12462 T14450 T14453 aux have,reported
R12463 T14451 T14453 advmod also,reported
R12464 T14452 T14453 advmod previously,reported
R12465 T14453 T14453 ROOT reported,reported
R12466 T14454 T14466 mark that,stimulated
R12467 T14455 T14456 amod GATA-3,knockdown
R12468 T14456 T14466 nsubj knockdown,stimulated
R12469 T14457 T14456 acl using,knockdown
R12470 T14458 T14459 compound siRNA,results
R12471 T14459 T14457 dobj results,using
R12472 T14460 T14459 prep in,results
R12473 T14461 T14460 pobj suppression,in
R12474 T14462 T14461 prep of,suppression
R12475 T14463 T14464 compound anti-CD3,/
R12476 T14464 T14465 compound /,CD28
R12477 T14465 T14462 pobj CD28,of
R12478 T14466 T14453 ccomp stimulated,reported
R12479 T14467 T14469 compound IL-4,IL-5
R12480 T14468 T14469 compound /,IL-5
R12481 T14469 T14470 compound IL-5,mRNA
R12482 T14470 T14471 compound mRNA,induction
R12483 T14471 T14466 dobj induction,stimulated
R12484 T14472 T14466 punct ",",stimulated
R12485 T14473 T14474 advmod thus,implicating
R12486 T14474 T14466 prep implicating,stimulated
R12487 T14475 T14477 det an,role
R12488 T14476 T14477 amod essential,role
R12489 T14477 T14474 dobj role,implicating
R12490 T14478 T14477 prep for,role
R12491 T14479 T14478 pobj GATA-3,for
R12492 T14480 T14477 prep in,role
R12493 T14481 T14482 det the,transcription
R12494 T14482 T14480 pobj transcription,in
R12495 T14483 T14482 prep of,transcription
R12496 T14484 T14485 det these,genes
R12497 T14485 T14483 pobj genes,of
R12498 T14486 T14488 nmod [,]
R12499 T14487 T14488 nummod 12,]
R12500 T14488 T14482 appos ],transcription
R12501 T14489 T14453 punct .,reported

GO-BP

Id Subject Object Predicate Lexical cue
T15239 197-210 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T15303 118-122 http://purl.obolibrary.org/obo/GO_0005136 denotes IL-4
T15307 123-127 http://purl.obolibrary.org/obo/GO_0005137 denotes IL-5

sentences

Id Subject Object Predicate Lexical cue
T13327 0-231 Sentence denotes We have also previously reported that GATA-3 knockdown using siRNA results in suppression of anti-CD3/CD28–stimulated IL-4/IL-5 mRNA induction, thus implicating an essential role for GATA-3 in the transcription of these genes [12].
T266 0-231 Sentence denotes We have also previously reported that GATA-3 knockdown using siRNA results in suppression of anti-CD3/CD28–stimulated IL-4/IL-5 mRNA induction, thus implicating an essential role for GATA-3 in the transcription of these genes [12].

events-check-again

Id Subject Object Predicate Lexical cue Negation
T15818 38-44 Protein denotes GATA-3
T15819 45-54 Gene_expression denotes knockdown true
T15820 78-89 Negative_regulation denotes suppression
T15821 78-89 Negative_regulation denotes suppression
T15822 107-117 Positive_regulation denotes stimulated
T15823 107-117 Positive_regulation denotes stimulated
T15824 118-122 Protein denotes IL-4
T15825 123-127 Protein denotes IL-5
T15826 133-142 Transcription denotes induction
T15827 133-142 Transcription denotes induction
T15828 174-178 Regulation denotes role
T15829 174-178 Regulation denotes role
T15830 183-189 Protein denotes GATA-3
T15831 197-210 Transcription denotes transcription
T15832 197-210 Transcription denotes transcription
R13594 T15818 T15819 themeOf GATA-3,knockdown
R13596 T15819 T15820 causeOf knockdown,suppression
R13597 T15819 T15821 causeOf knockdown,suppression
R13598 T15822 T15821 themeOf stimulated,suppression
R13600 T15823 T15820 themeOf stimulated,suppression
R13601 T15824 T15826 themeOf IL-4,induction
R13602 T15824 T15832 themeOf IL-4,transcription
R13603 T15825 T15827 themeOf IL-5,induction
R13604 T15825 T15831 themeOf IL-5,transcription
R13606 T15826 T15823 themeOf induction,stimulated
R13607 T15827 T15822 themeOf induction,stimulated
R13609 T15830 T15829 causeOf GATA-3,role
R13610 T15830 T15828 causeOf GATA-3,role
R13611 T15831 T15828 themeOf transcription,role
R13612 T15832 T15829 themeOf transcription,role

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T15683 38-44 Protein denotes GATA-3
T15684 98-101 Protein denotes CD3
T15685 102-106 Protein denotes CD28
T15686 118-132 Protein denotes IL-4/IL-5 mRNA
T15687 183-189 Protein denotes GATA-3
T15688 45-54 Negative_regulation denotes knockdown
T15689 197-210 Transcription denotes transcription
R13545 T15683 T15688 themeOf GATA-3,knockdown
R13546 T15687 T15689 themeOf GATA-3,transcription

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T13195 38-44 Protein denotes GATA-3
T13196 45-54 Gene_expression denotes knockdown true
T13197 78-89 Negative_regulation denotes suppression
T13198 78-89 Negative_regulation denotes suppression
T13199 107-117 Positive_regulation denotes stimulated
T13200 107-117 Positive_regulation denotes stimulated
T13201 118-122 Protein denotes IL-4
T13202 123-127 Protein denotes IL-5
T13203 133-142 Transcription denotes induction
T13204 133-142 Transcription denotes induction
T13205 174-178 Regulation denotes role
T13206 174-178 Regulation denotes role
T13207 183-189 Protein denotes GATA-3
T13208 197-210 Transcription denotes transcription
T13209 197-210 Transcription denotes transcription
R11318 T13195 T13196 themeOf GATA-3,knockdown
R11319 T13196 T13197 causeOf knockdown,suppression
R11320 T13196 T13198 causeOf knockdown,suppression
R11321 T13199 T13198 themeOf stimulated,suppression
R11322 T13200 T13197 themeOf stimulated,suppression
R11323 T13201 T13203 themeOf IL-4,induction
R11324 T13201 T13209 themeOf IL-4,transcription
R11325 T13202 T13204 themeOf IL-5,induction
R11326 T13202 T13208 themeOf IL-5,transcription
R11327 T13203 T13200 themeOf induction,stimulated
R11328 T13204 T13199 themeOf induction,stimulated
R11329 T13207 T13206 causeOf GATA-3,role
R11330 T13207 T13205 causeOf GATA-3,role
R11331 T13208 T13205 themeOf transcription,role
R11332 T13209 T13206 themeOf transcription,role

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T14243 38-44 P23771 denotes GATA-3
T14244 98-101 P04234 denotes CD3
T14245 98-101 P09693 denotes CD3
T14246 98-101 P20963 denotes CD3
T14247 98-101 P07766 denotes CD3
T14248 102-106 P10747 denotes CD28
T14249 118-122 P05112 denotes IL-4
T14250 123-127 P05113 denotes IL-5
T14251 183-189 P23771 denotes GATA-3

test2

Id Subject Object Predicate Lexical cue Speculation
T13039 38-44 Protein denotes GATA-3
T13040 45-54 Negative_regulation denotes knockdown
T13041 78-89 Negative_regulation denotes suppression
T13042 107-117 Positive_regulation denotes stimulated true
T13043 118-122 Protein denotes IL-4
T13044 123-127 Protein denotes IL-5
T13045 128-132 Transcription denotes mRNA
T13046 133-142 Positive_regulation denotes induction
T13047 174-178 Regulation denotes role
T13048 183-189 Protein denotes GATA-3
R11202 T13039 T13040 themeOf GATA-3,knockdown
R11203 T13040 T13041 causeOf knockdown,suppression
R11204 T13043 T13046 themeOf IL-4,induction
R11205 T13046 T13042 themeOf induction,stimulated
R11206 T13048 T13047 causeOf GATA-3,role