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PMC:2674207 / 20336-20606 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6870 0-3 NN denotes DNA
T6871 4-7 VB denotes was
T6872 8-17 VB denotes recovered
T6873 18-20 IN denotes by
T6874 21-27 NN denotes phenol
T6875 28-38 NN denotes extraction
T6876 39-42 CC denotes and
T6877 43-50 NN denotes ethanol
T6878 51-64 NN denotes precipitation
T6879 64-65 -COMMA- denotes ,
T6880 66-69 CC denotes and
T6881 70-74 CC denotes both
T6882 75-78 DT denotes the
T6883 79-90 JJ denotes blunt-ended
T6884 91-97 NN denotes GATA-3
T6885 98-106 NN denotes fragment
T6886 107-110 CC denotes and
T6887 111-114 DT denotes the
T6888 115-118 NN denotes GFP
T6889 119-125 NN denotes vector
T6890 126-130 VB denotes were
T6891 131-143 RB denotes subsequently
T6892 144-152 VB denotes digested
T6893 153-157 IN denotes with
T6894 158-163 NN denotes EcoRI
T6895 164-170 IN denotes before
T6896 171-174 DT denotes the
T6897 175-192 JJ denotes 5′-EcoRI/3′–blunt
T6898 193-196 NN denotes end
T6899 197-203 NN denotes GATA-3
T6900 204-212 NN denotes fragment
T6901 213-216 VB denotes was
T6902 217-225 VB denotes inserted
T6903 226-230 IN denotes into
T6904 231-234 DT denotes the
T6905 235-252 NN denotes 5′-EcoRI/3′–blunt
T6906 253-258 VB denotes ended
T6907 259-262 NN denotes GFP
T6908 263-269 NN denotes vector
R5900 T6872 T6871 arg2Of recovered,was
R5901 T6875 T6874 arg1Of extraction,phenol
R5902 T6875 T6876 arg1Of extraction,and
R5903 T6876 T6872 arg1Of and,recovered
R5904 T6876 T6873 arg2Of and,by
R5905 T6878 T6876 arg2Of precipitation,and
R5906 T6878 T6877 arg1Of precipitation,ethanol
R5907 T6880 T6879 arg1Of and,","
R5908 T6885 T6882 arg1Of fragment,the
R5909 T6885 T6883 arg1Of fragment,blunt-ended
R5910 T6885 T6884 arg1Of fragment,GATA-3
R5911 T6885 T6886 arg1Of fragment,and
R5912 T6886 T6881 arg1Of and,both
R5913 T6886 T6890 arg1Of and,were
R5914 T6886 T6892 arg2Of and,digested
R5915 T6889 T6886 arg2Of vector,and
R5916 T6889 T6887 arg1Of vector,the
R5917 T6889 T6888 arg1Of vector,GFP
R5918 T6892 T6880 arg2Of digested,and
R5919 T6892 T6890 arg2Of digested,were
R5920 T6892 T6891 arg1Of digested,subsequently
R5921 T6892 T6893 arg1Of digested,with
R5922 T6892 T6895 arg1Of digested,before
R5923 T6894 T6893 arg2Of EcoRI,with
R5924 T6900 T6896 arg1Of fragment,the
R5925 T6900 T6897 arg1Of fragment,5′-EcoRI/3′–blunt
R5926 T6900 T6898 arg1Of fragment,end
R5927 T6900 T6899 arg1Of fragment,GATA-3
R5928 T6900 T6901 arg1Of fragment,was
R5929 T6900 T6902 arg2Of fragment,inserted
R5930 T6902 T6895 arg2Of inserted,before
R5931 T6902 T6901 arg2Of inserted,was
R5932 T6902 T6903 arg1Of inserted,into
R5933 T6906 T6905 arg1Of ended,5′-EcoRI/3′–blunt
R5934 T6908 T6903 arg2Of vector,into
R5935 T6908 T6904 arg1Of vector,the
R5936 T6908 T6906 arg1Of vector,ended
R5937 T6908 T6907 arg1Of vector,GFP

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7039 0-3 NNP denotes DNA
T7040 4-7 VBD denotes was
T7041 8-17 VBN denotes recovered
T7042 18-20 IN denotes by
T7043 21-27 NN denotes phenol
T7044 28-38 NN denotes extraction
T7045 39-42 CC denotes and
T7046 43-50 NN denotes ethanol
T7047 51-64 NN denotes precipitation
T7048 64-65 , denotes ,
T7049 66-69 CC denotes and
T7050 70-74 DT denotes both
T7051 75-78 DT denotes the
T7052 79-90 JJ denotes blunt-ended
T7053 91-97 JJ denotes GATA-3
T7054 98-106 NN denotes fragment
T7055 107-110 CC denotes and
T7056 111-114 DT denotes the
T7057 115-118 NNP denotes GFP
T7058 119-125 NN denotes vector
T7059 126-130 VBD denotes were
T7060 131-143 RB denotes subsequently
T7061 144-152 VBN denotes digested
T7062 153-157 IN denotes with
T7063 158-163 NNP denotes EcoRI
T7064 164-170 IN denotes before
T7065 171-174 DT denotes the
T7066 175-176 CD denotes 5
T7067 176-177 SYM denotes ′
T7068 177-178 : denotes -
T7069 178-185 JJ denotes EcoRI/3
T7070 185-186 NN denotes ′
T7071 187-192 JJ denotes blunt
T7072 193-196 NN denotes end
T7073 197-203 NN denotes GATA-3
T7074 204-212 NN denotes fragment
T7075 213-216 VBD denotes was
T7076 217-225 VBN denotes inserted
T7077 226-230 IN denotes into
T7078 231-234 DT denotes the
T7079 235-236 CD denotes 5
T7080 236-237 SYM denotes ′
T7081 237-238 : denotes -
T7082 238-245 JJ denotes EcoRI/3
T7083 245-246 NN denotes ′
T7084 247-252 JJ denotes blunt
T7085 253-258 VBN denotes ended
T7086 259-262 NNP denotes GFP
T7087 263-269 NN denotes vector
T7088 269-270 . denotes .
R6061 T7040 T7041 auxpass was,recovered
R6063 T7042 T7041 agent by,recovered
R6064 T7043 T7044 compound phenol,extraction
R6065 T7044 T7042 pobj extraction,by
R6066 T7045 T7044 cc and,extraction
R6067 T7046 T7047 compound ethanol,precipitation
R6068 T7047 T7044 conj precipitation,extraction
R6069 T7048 T7041 punct ",",recovered
R6071 T7050 T7054 preconj both,fragment
R6072 T7051 T7054 det the,fragment
R6073 T7052 T7054 amod blunt-ended,fragment
R6074 T7053 T7054 compound GATA-3,fragment
R6075 T7054 T7061 nsubjpass fragment,digested
R6076 T7055 T7054 cc and,fragment
R6077 T7056 T7058 det the,vector
R6078 T7057 T7058 compound GFP,vector
R6079 T7058 T7054 conj vector,fragment
R6080 T7059 T7061 auxpass were,digested
R6081 T7060 T7061 advmod subsequently,digested
R6083 T7062 T7061 prep with,digested
R6084 T7063 T7062 pobj EcoRI,with
R6085 T7064 T7061 prep before,digested
R6086 T7065 T7070 det the,′
R6087 T7066 T7070 nummod 5,′
R6088 T7067 T7069 punct ′,EcoRI/3
R6089 T7068 T7069 punct -,EcoRI/3
R6090 T7069 T7070 compound EcoRI/3,′
R6091 T7070 T7064 pobj ′,before
R6092 T7071 T7074 amod blunt,fragment
R6093 T7072 T7074 compound end,fragment
R6094 T7073 T7074 compound GATA-3,fragment
R6095 T7074 T7076 nsubjpass fragment,inserted
R6096 T7075 T7076 auxpass was,inserted
R6098 T7077 T7076 prep into,inserted
R6099 T7078 T7083 det the,′
R6100 T7079 T7082 nummod 5,EcoRI/3
R6101 T7080 T7082 punct ′,EcoRI/3
R6102 T7081 T7082 punct -,EcoRI/3
R6103 T7082 T7083 compound EcoRI/3,′
R6104 T7083 T7077 pobj ′,into
R6105 T7084 T7085 nsubj blunt,ended
R6106 T7085 T7076 advcl ended,inserted
R6107 T7086 T7087 compound GFP,vector
R6108 T7087 T7085 dobj vector,ended
R6109 T7088 T7085 punct .,ended

sentences

Id Subject Object Predicate Lexical cue
T145 0-270 Sentence denotes DNA was recovered by phenol extraction and ethanol precipitation, and both the blunt-ended GATA-3 fragment and the GFP vector were subsequently digested with EcoRI before the 5′-EcoRI/3′–blunt end GATA-3 fragment was inserted into the 5′-EcoRI/3′–blunt ended GFP vector.

events-check-again

Id Subject Object Predicate Lexical cue
T7163 91-97 Protein denotes GATA-3
T7164 115-118 Protein denotes GFP
T7165 158-163 Protein denotes EcoRI
T7166 197-203 Protein denotes GATA-3
T7167 259-262 Protein denotes GFP

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7153 158-163 Protein denotes EcoRI
T7154 197-212 Protein denotes GATA-3 fragment

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6769 91-97 Protein denotes GATA-3
T6770 115-118 Protein denotes GFP
T6771 158-163 Protein denotes EcoRI
T6772 197-203 Protein denotes GATA-3
T6773 259-262 Protein denotes GFP

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6933 91-97 P23771 denotes GATA-3
T6934 115-118 Q9U6Y4 denotes GFP
T6935 197-203 P23771 denotes GATA-3
T6936 259-262 Q9U6Y4 denotes GFP

test2

Id Subject Object Predicate Lexical cue
T6756 91-97 Protein denotes GATA-3
T6757 115-118 Protein denotes GFP
T6758 158-163 Protein denotes EcoRI
T6759 197-203 Protein denotes GATA-3
T6760 259-262 Protein denotes GFP
R5812 T6756 T6758 themeOf GATA-3,EcoRI
R5813 T6757 T6758 themeOf GFP,EcoRI
R5814 T6759 T6758 themeOf GATA-3,EcoRI