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PMC:2674207 / 16084-16467 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
19436703-17277157-86274490 74-76 17277157 denotes 12
T57036 74-76 17277157 denotes 12

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5208 0-9 NN denotes Chromatin
T5209 10-29 NN denotes immunoprecipitation
T5210 30-31 -LRB- denotes (
T5211 31-33 NN denotes IP
T5212 33-34 -RRB- denotes )
T5213 35-38 VB denotes was
T5214 39-48 VB denotes performed
T5215 49-51 IN denotes as
T5216 52-62 RB denotes previously
T5217 63-72 VB denotes described
T5218 73-74 -LRB- denotes [
T5219 74-76 CD denotes 12
T5220 76-77 -RRB- denotes ]
T5221 78-80 IN denotes in
T5222 81-87 JJ denotes HuT-78
T5223 88-95 NN denotes T-cells
T5224 96-100 IN denotes with
T5225 101-102 CD denotes 2
T5226 103-105 NN denotes µg
T5227 106-108 IN denotes of
T5228 109-120 NN denotes anti-GATA-3
T5229 121-122 -LRB- denotes (
T5230 122-127 NNP denotes Santa
T5231 128-132 NNP denotes Cruz
T5232 133-146 NNP denotes Biotechnology
T5233 146-147 -RRB- denotes )
T5234 147-148 -COMMA- denotes ,
T5235 149-151 CC denotes or
T5236 152-160 JJ denotes isotypic
T5237 161-175 NN denotes immunoglobulin
T5238 176-177 NN denotes G
T5239 178-180 IN denotes as
T5240 181-182 DT denotes a
T5241 183-195 JJ denotes non-specific
T5242 196-203 NN denotes control
T5243 204-205 -LRB- denotes (
T5244 205-210 NNP denotes Santa
T5245 211-215 NNP denotes Cruz
T5246 216-229 NNP denotes Biotechnology
T5247 229-230 -RRB- denotes )
T5248 231-240 RB denotes overnight
T5249 241-243 IN denotes at
T5250 244-248 NNP denotes 4°C.
T5251 249-257 NNP denotes Promoter
T5252 258-267 NN denotes sequences
T5253 268-272 VB denotes were
T5254 273-281 VB denotes detected
T5255 282-286 IN denotes with
T5256 287-290 NN denotes PCR
T5257 291-298 NN denotes primers
T5258 299-302 IN denotes for
T5259 303-306 DT denotes the
T5260 307-311 NN denotes IL-5
T5261 312-320 NN denotes promoter
T5262 321-322 -LRB- denotes (
T5263 322-326 CD denotes −445
T5264 327-329 TO denotes to
T5265 330-332 CD denotes +4
T5266 332-333 -RRB- denotes )
T5267 333-334 -COLON- denotes :
T5268 335-342 JJ denotes forward
T5269 343-370 NN denotes 5′-TTAATCTAGCCACAGTCATAG-3′
T5270 371-374 CC denotes and
T5271 375-382 VB denotes reverse
T5272 382-383 -COLON- denotes :
R4484 T5209 T5208 arg1Of immunoprecipitation,Chromatin
R4485 T5209 T5210 arg1Of immunoprecipitation,(
R4486 T5209 T5213 arg1Of immunoprecipitation,was
R4487 T5209 T5214 arg2Of immunoprecipitation,performed
R4488 T5211 T5210 arg2Of IP,(
R4489 T5212 T5210 arg3Of ),(
R4490 T5214 T5213 arg2Of performed,was
R4491 T5214 T5215 arg1Of performed,as
R4492 T5214 T5239 arg1Of performed,as
R4493 T5214 T5248 arg1Of performed,overnight
R4494 T5217 T5216 arg1Of described,previously
R4495 T5219 T5215 arg2Of 12,as
R4496 T5219 T5217 arg1Of 12,described
R4497 T5219 T5218 arg2Of 12,[
R4498 T5219 T5221 arg1Of 12,in
R4499 T5219 T5224 arg1Of 12,with
R4500 T5220 T5218 arg3Of ],[
R4501 T5223 T5221 arg2Of T-cells,in
R4502 T5223 T5222 arg1Of T-cells,HuT-78
R4503 T5226 T5224 arg2Of µg,with
R4504 T5226 T5225 arg1Of µg,2
R4505 T5226 T5227 arg1Of µg,of
R4506 T5228 T5229 arg1Of anti-GATA-3,(
R4507 T5228 T5235 arg1Of anti-GATA-3,or
R4508 T5232 T5229 arg2Of Biotechnology,(
R4509 T5232 T5230 arg1Of Biotechnology,Santa
R4510 T5232 T5231 arg1Of Biotechnology,Cruz
R4511 T5233 T5229 arg3Of ),(
R4512 T5235 T5227 arg2Of or,of
R4513 T5235 T5234 arg1Of or,","
R4514 T5238 T5235 arg2Of G,or
R4515 T5238 T5236 arg1Of G,isotypic
R4516 T5238 T5237 arg1Of G,immunoglobulin
R4517 T5242 T5239 arg2Of control,as
R4518 T5242 T5240 arg1Of control,a
R4519 T5242 T5241 arg1Of control,non-specific
R4520 T5242 T5243 arg1Of control,(
R4521 T5246 T5243 arg2Of Biotechnology,(
R4522 T5246 T5244 arg1Of Biotechnology,Santa
R4523 T5246 T5245 arg1Of Biotechnology,Cruz
R4524 T5247 T5243 arg3Of ),(
R4525 T5251 T5250 arg1Of Promoter,4°C.
R4526 T5252 T5251 arg1Of sequences,Promoter
R4527 T5252 T5253 arg1Of sequences,were
R4528 T5252 T5254 arg2Of sequences,detected
R4529 T5252 T5271 arg1Of sequences,reverse
R4530 T5254 T5253 arg2Of detected,were
R4531 T5254 T5255 arg1Of detected,with
R4532 T5254 T5270 arg1Of detected,and
R4533 T5257 T5255 arg2Of primers,with
R4534 T5257 T5256 arg1Of primers,PCR
R4535 T5257 T5258 arg1Of primers,for
R4536 T5261 T5259 arg1Of promoter,the
R4537 T5261 T5260 arg1Of promoter,IL-5
R4538 T5261 T5262 arg1Of promoter,(
R4539 T5261 T5267 arg1Of promoter,:
R4540 T5265 T5262 arg2Of +4,(
R4541 T5265 T5263 arg1Of +4,−445
R4542 T5265 T5264 arg1Of +4,to
R4543 T5266 T5262 arg3Of ),(
R4544 T5269 T5258 arg2Of 5′-TTAATCTAGCCACAGTCATAG-3′,for
R4545 T5269 T5261 arg1Of 5′-TTAATCTAGCCACAGTCATAG-3′,promoter
R4546 T5269 T5268 arg1Of 5′-TTAATCTAGCCACAGTCATAG-3′,forward
R4547 T5270 T5213 modOf and,was
R4548 T5270 T5249 arg1Of and,at
R4549 T5270 T5272 arg1Of and,:
R4550 T5271 T5270 arg2Of reverse,and

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5320 0-9 NNP denotes Chromatin
T5321 10-29 NN denotes immunoprecipitation
T5322 30-31 -LRB- denotes (
T5323 31-33 NNP denotes IP
T5324 33-34 -RRB- denotes )
T5325 35-38 VBD denotes was
T5326 39-48 VBN denotes performed
T5327 49-51 IN denotes as
T5328 52-62 RB denotes previously
T5329 63-72 VBN denotes described
T5330 73-74 NNP denotes [
T5331 74-76 CD denotes 12
T5332 76-77 NNP denotes ]
T5333 78-80 IN denotes in
T5334 81-87 NNP denotes HuT-78
T5335 88-95 NNS denotes T-cells
T5336 96-100 IN denotes with
T5337 101-102 CD denotes 2
T5338 103-105 NN denotes µg
T5339 106-108 IN denotes of
T5340 109-120 JJ denotes anti-GATA-3
T5341 121-122 -LRB- denotes (
T5342 122-127 NNP denotes Santa
T5343 128-132 NNP denotes Cruz
T5344 133-146 NNP denotes Biotechnology
T5345 146-147 -RRB- denotes )
T5346 147-148 , denotes ,
T5347 149-151 CC denotes or
T5348 152-160 JJ denotes isotypic
T5349 161-175 NN denotes immunoglobulin
T5350 176-177 NNP denotes G
T5351 178-180 IN denotes as
T5352 181-182 DT denotes a
T5353 183-195 JJ denotes non-specific
T5354 196-203 NN denotes control
T5355 204-205 -LRB- denotes (
T5356 205-210 NNP denotes Santa
T5357 211-215 NNP denotes Cruz
T5358 216-229 NNP denotes Biotechnology
T5359 229-230 -RRB- denotes )
T5360 231-240 RB denotes overnight
T5361 241-243 IN denotes at
T5362 244-245 CD denotes 4
T5363 245-246 CD denotes °
T5364 246-248 NNP denotes C.
T5365 249-257 NNP denotes Promoter
T5366 258-267 NNS denotes sequences
T5367 268-272 VBD denotes were
T5368 273-281 VBN denotes detected
T5369 282-286 IN denotes with
T5370 287-290 NNP denotes PCR
T5371 291-298 NNS denotes primers
T5372 299-302 IN denotes for
T5373 303-306 DT denotes the
T5374 307-311 NN denotes IL-5
T5375 312-320 NN denotes promoter
T5376 321-322 -LRB- denotes (
T5377 322-323 FW denotes −
T5378 323-326 CD denotes 445
T5379 327-329 TO denotes to
T5380 330-332 CD denotes +4
T5381 332-333 -RRB- denotes )
T5382 333-334 : denotes :
T5383 335-342 RB denotes forward
T5384 343-344 CD denotes 5
T5385 344-345 SYM denotes ′
T5386 345-346 : denotes -
T5387 346-369 NN denotes TTAATCTAGCCACAGTCATAG-3
T5388 369-370 NN denotes ′
T5389 371-374 CC denotes and
T5390 375-382 NN denotes reverse
T5391 382-383 : denotes :
R4595 T5320 T5321 compound Chromatin,immunoprecipitation
R4596 T5321 T5326 nsubjpass immunoprecipitation,performed
R4597 T5322 T5323 punct (,IP
R4598 T5323 T5321 appos IP,immunoprecipitation
R4599 T5324 T5321 punct ),immunoprecipitation
R4600 T5325 T5326 auxpass was,performed
R4601 T5326 T5326 ROOT performed,performed
R4602 T5327 T5329 mark as,described
R4603 T5328 T5329 advmod previously,described
R4604 T5329 T5326 advcl described,performed
R4605 T5330 T5332 nmod [,]
R4606 T5331 T5332 nummod 12,]
R4607 T5332 T5329 dobj ],described
R4608 T5333 T5329 prep in,described
R4609 T5334 T5335 compound HuT-78,T-cells
R4610 T5335 T5333 pobj T-cells,in
R4611 T5336 T5335 prep with,T-cells
R4612 T5337 T5338 nummod 2,µg
R4613 T5338 T5336 pobj µg,with
R4614 T5339 T5338 prep of,µg
R4615 T5340 T5339 pobj anti-GATA-3,of
R4616 T5341 T5344 punct (,Biotechnology
R4617 T5342 T5344 compound Santa,Biotechnology
R4618 T5343 T5344 compound Cruz,Biotechnology
R4619 T5344 T5340 appos Biotechnology,anti-GATA-3
R4620 T5345 T5344 punct ),Biotechnology
R4621 T5346 T5344 punct ",",Biotechnology
R4622 T5347 T5344 cc or,Biotechnology
R4623 T5348 T5350 amod isotypic,G
R4624 T5349 T5350 compound immunoglobulin,G
R4625 T5350 T5344 conj G,Biotechnology
R4626 T5351 T5338 prep as,µg
R4627 T5352 T5354 det a,control
R4628 T5353 T5354 amod non-specific,control
R4629 T5354 T5351 pobj control,as
R4630 T5355 T5358 punct (,Biotechnology
R4631 T5356 T5357 compound Santa,Cruz
R4632 T5357 T5358 compound Cruz,Biotechnology
R4633 T5358 T5354 appos Biotechnology,control
R4634 T5359 T5354 punct ),control
R4635 T5360 T5329 advmod overnight,described
R4636 T5361 T5329 prep at,described
R4637 T5362 T5363 nummod 4,°
R4638 T5363 T5366 nummod °,sequences
R4639 T5364 T5365 compound C.,Promoter
R4640 T5365 T5366 compound Promoter,sequences
R4641 T5366 T5368 nsubjpass sequences,detected
R4642 T5367 T5368 auxpass were,detected
R4643 T5368 T5326 conj detected,performed
R4644 T5369 T5368 prep with,detected
R4645 T5370 T5371 compound PCR,primers
R4646 T5371 T5369 pobj primers,with
R4647 T5372 T5371 prep for,primers
R4648 T5373 T5375 det the,promoter
R4649 T5374 T5375 compound IL-5,promoter
R4650 T5375 T5372 pobj promoter,for
R4651 T5376 T5375 punct (,promoter
R4652 T5377 T5388 advmod −,′
R4653 T5378 T5388 meta 445,′
R4654 T5379 T5378 prep to,445
R4655 T5380 T5379 pobj +4,to
R4656 T5381 T5378 punct ),445
R4657 T5382 T5388 punct :,′
R4658 T5383 T5388 advmod forward,′
R4659 T5384 T5388 nummod 5,′
R4660 T5385 T5387 punct ′,TTAATCTAGCCACAGTCATAG-3
R4661 T5386 T5387 punct -,TTAATCTAGCCACAGTCATAG-3
R4662 T5387 T5388 compound TTAATCTAGCCACAGTCATAG-3,′
R4663 T5388 T5375 appos ′,promoter
R4664 T5389 T5388 cc and,′
R4665 T5390 T5388 conj reverse,′
R4666 T5391 T5388 punct :,′

GO-MF

Id Subject Object Predicate Lexical cue
T5452 161-175 http://purl.obolibrary.org/obo/GO_0003823 denotes immunoglobulin
T5453 307-311 http://purl.obolibrary.org/obo/GO_0005137 denotes IL-5

GO-CC

Id Subject Object Predicate Lexical cue
T5455 0-9 http://purl.obolibrary.org/obo/GO_0000785 denotes Chromatin
T5456 90-95 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5203 0-383 Sentence denotes Chromatin immunoprecipitation (IP) was performed as previously described [12] in HuT-78 T-cells with 2 µg of anti-GATA-3 (Santa Cruz Biotechnology), or isotypic immunoglobulin G as a non-specific control (Santa Cruz Biotechnology) overnight at 4°C. Promoter sequences were detected with PCR primers for the IL-5 promoter (−445 to +4): forward 5′-TTAATCTAGCCACAGTCATAG-3′ and reverse:
T110 0-248 Sentence denotes Chromatin immunoprecipitation (IP) was performed as previously described [12] in HuT-78 T-cells with 2 µg of anti-GATA-3 (Santa Cruz Biotechnology), or isotypic immunoglobulin G as a non-specific control (Santa Cruz Biotechnology) overnight at 4°C.
T111 249-383 Sentence denotes Promoter sequences were detected with PCR primers for the IL-5 promoter (−445 to +4): forward 5′-TTAATCTAGCCACAGTCATAG-3′ and reverse:

events-check-again

Id Subject Object Predicate Lexical cue
T5459 307-311 Protein denotes IL-5

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5462 0-9 Protein denotes Chromatin
T5463 161-177 Protein denotes immunoglobulin G
T5464 307-320 Protein denotes IL-5 promoter

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T5201 307-311 Protein denotes IL-5

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5316 114-120 P23771 denotes GATA-3
T5317 307-311 P05113 denotes IL-5

test2

Id Subject Object Predicate Lexical cue
T5200 307-311 Protein denotes IL-5