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PMC:2674207 / 15272-15441 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4874 0-5 JJ denotes Whole
T4875 6-10 NN denotes cell
T4876 11-18 NN denotes lysates
T4877 19-23 VB denotes were
T4878 24-32 VB denotes prepared
T4879 33-35 IN denotes in
T4880 36-41 NN denotes NP-40
T4881 42-47 NN denotes lysis
T4882 48-54 NN denotes buffer
T4883 55-56 -LRB- denotes (
T4884 56-59 CD denotes 0.5
T4885 59-60 NN denotes %
T4886 61-68 NN denotes Nonidet
T4887 69-73 NN denotes P-40
T4888 73-74 -COMMA- denotes ,
T4889 75-77 CD denotes 20
T4890 78-80 NN denotes mM
T4891 81-89 NN denotes Tris-HCl
T4892 90-91 -LRB- denotes [
T4893 91-93 NN denotes pH
T4894 94-97 CD denotes 7.5
T4895 97-98 -RRB- denotes ]
T4896 98-99 -COMMA- denotes ,
T4897 100-103 CD denotes 150
T4898 104-106 NN denotes mM
T4899 107-111 NN denotes NaCl
T4900 111-112 -RRB- denotes )
T4901 113-115 IN denotes in
T4902 116-119 DT denotes the
T4903 120-128 NN denotes presence
T4904 129-131 IN denotes of
T4905 132-140 JJ denotes complete
T4906 141-149 NN denotes protease
T4907 150-158 NN denotes cocktail
T4908 159-168 NN denotes inhibitor
R4187 T4876 T4874 arg1Of lysates,Whole
R4188 T4876 T4875 arg1Of lysates,cell
R4189 T4876 T4877 arg1Of lysates,were
R4190 T4876 T4878 arg2Of lysates,prepared
R4191 T4878 T4877 arg2Of prepared,were
R4192 T4878 T4879 arg1Of prepared,in
R4193 T4882 T4879 arg2Of buffer,in
R4194 T4882 T4880 arg1Of buffer,NP-40
R4195 T4882 T4881 arg1Of buffer,lysis
R4196 T4882 T4883 arg1Of buffer,(
R4197 T4882 T4901 arg1Of buffer,in
R4198 T4884 T4885 arg1Of 0.5,%
R4199 T4887 T4884 arg1Of P-40,0.5
R4200 T4887 T4886 arg1Of P-40,Nonidet
R4201 T4887 T4888 arg1Of P-40,","
R4202 T4888 T4896 arg1Of ",",","
R4203 T4889 T4890 arg1Of 20,mM
R4204 T4891 T4888 arg2Of Tris-HCl,","
R4205 T4891 T4889 arg1Of Tris-HCl,20
R4206 T4891 T4892 arg1Of Tris-HCl,[
R4207 T4893 T4892 arg2Of pH,[
R4208 T4893 T4894 arg1Of pH,7.5
R4209 T4895 T4892 arg3Of ],[
R4210 T4896 T4883 arg2Of ",",(
R4211 T4897 T4898 arg1Of 150,mM
R4212 T4899 T4896 arg2Of NaCl,","
R4213 T4899 T4897 arg1Of NaCl,150
R4214 T4900 T4883 arg3Of ),(
R4215 T4903 T4901 arg2Of presence,in
R4216 T4903 T4902 arg1Of presence,the
R4217 T4903 T4904 arg1Of presence,of
R4218 T4908 T4904 arg2Of inhibitor,of
R4219 T4908 T4905 arg1Of inhibitor,complete
R4220 T4908 T4906 arg1Of inhibitor,protease
R4221 T4908 T4907 arg1Of inhibitor,cocktail

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5035 0-5 JJ denotes Whole
T5036 6-10 NN denotes cell
T5037 11-18 NNS denotes lysates
T5038 19-23 VBD denotes were
T5039 24-32 VBN denotes prepared
T5040 33-35 IN denotes in
T5041 36-41 NN denotes NP-40
T5042 42-47 NN denotes lysis
T5043 48-54 NN denotes buffer
T5044 55-56 -LRB- denotes (
T5045 56-59 CD denotes 0.5
T5046 59-60 NN denotes %
T5047 61-68 NNP denotes Nonidet
T5048 69-73 NNP denotes P-40
T5049 73-74 , denotes ,
T5050 75-77 CD denotes 20
T5051 78-80 NNP denotes mM
T5052 81-89 NNP denotes Tris-HCl
T5053 90-91 NNP denotes [
T5054 91-93 NNP denotes pH
T5055 94-97 CD denotes 7.5
T5056 97-98 NNP denotes ]
T5057 98-99 , denotes ,
T5058 100-103 CD denotes 150
T5059 104-106 NNP denotes mM
T5060 107-111 NNP denotes NaCl
T5061 111-112 -RRB- denotes )
T5062 113-115 IN denotes in
T5063 116-119 DT denotes the
T5064 120-128 NN denotes presence
T5065 129-131 IN denotes of
T5066 132-140 JJ denotes complete
T5067 141-149 NN denotes protease
T5068 150-158 NN denotes cocktail
T5069 159-168 NN denotes inhibitor
T5070 168-169 . denotes .
R4344 T5035 T5037 amod Whole,lysates
R4345 T5036 T5037 compound cell,lysates
R4346 T5037 T5039 nsubjpass lysates,prepared
R4347 T5038 T5039 auxpass were,prepared
R4348 T5039 T5039 ROOT prepared,prepared
R4349 T5040 T5039 prep in,prepared
R4350 T5041 T5043 compound NP-40,buffer
R4351 T5042 T5043 compound lysis,buffer
R4352 T5043 T5040 pobj buffer,in
R4353 T5044 T5048 punct (,P-40
R4354 T5045 T5046 nummod 0.5,%
R4355 T5046 T5048 compound %,P-40
R4356 T5047 T5048 compound Nonidet,P-40
R4357 T5048 T5043 appos P-40,buffer
R4358 T5049 T5048 punct ",",P-40
R4359 T5050 T5054 nummod 20,pH
R4360 T5051 T5054 compound mM,pH
R4361 T5052 T5054 compound Tris-HCl,pH
R4362 T5053 T5054 compound [,pH
R4363 T5054 T5048 appos pH,P-40
R4364 T5055 T5056 nummod 7.5,]
R4365 T5056 T5056 ROOT ],]
R4366 T5057 T5056 punct ",",]
R4367 T5058 T5060 nummod 150,NaCl
R4368 T5059 T5060 compound mM,NaCl
R4369 T5060 T5056 appos NaCl,]
R4370 T5061 T5056 punct ),]
R4371 T5062 T5056 prep in,]
R4372 T5063 T5064 det the,presence
R4373 T5064 T5062 pobj presence,in
R4374 T5065 T5064 prep of,presence
R4375 T5066 T5069 amod complete,inhibitor
R4376 T5067 T5069 compound protease,inhibitor
R4377 T5068 T5069 compound cocktail,inhibitor
R4378 T5069 T5065 pobj inhibitor,of
R4379 T5070 T5039 punct .,prepared

GO-BP

Id Subject Object Predicate Lexical cue
T5179 42-47 http://purl.obolibrary.org/obo/GO_0019835 denotes lysis

GO-CC

Id Subject Object Predicate Lexical cue
T5183 6-10 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T4848 0-169 Sentence denotes Whole cell lysates were prepared in NP-40 lysis buffer (0.5% Nonidet P-40, 20 mM Tris-HCl [pH 7.5], 150 mM NaCl) in the presence of complete protease cocktail inhibitor.
T104 0-169 Sentence denotes Whole cell lysates were prepared in NP-40 lysis buffer (0.5% Nonidet P-40, 20 mM Tris-HCl [pH 7.5], 150 mM NaCl) in the presence of complete protease cocktail inhibitor.

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5189 132-149 Protein denotes complete protease
T5190 159-168 Negative_regulation denotes inhibitor
R4481 T5189 T5190 themeOf complete protease,inhibitor

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5004 91-93 P0A7Z4 denotes pH