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PMC:2664230 / 8243-8503 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3251 151-164 Positive_regulation denotes up-regulation
T3252 169-184 Negative_regulation denotes down-regulation
T3253 188-193 Protein denotes TNF-α
T3254 194-204 Gene_expression denotes production
R2597 T3253 T3254 themeOf TNF-α,production
R2598 T3254 T3251 themeOf production,up-regulation
R2599 T3254 T3252 themeOf production,down-regulation

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3825 0-3 NN denotes LPS
T3826 4-6 IN denotes at
T3827 7-8 DT denotes a
T3828 9-22 NN denotes concentration
T3829 23-25 IN denotes of
T3830 26-27 CD denotes 1
T3831 28-33 NN denotes μg/mL
T3832 34-37 CC denotes and
T3833 38-41 NN denotes PTX
T3834 42-44 IN denotes at
T3835 45-46 DT denotes a
T3836 47-60 NN denotes concentration
T3837 61-63 IN denotes of
T3838 64-66 CD denotes 20
T3839 67-69 NN denotes mM
T3840 70-74 VB denotes were
T3841 75-78 DT denotes the
T3842 79-86 JJ denotes minimum
T3843 87-101 NN denotes concentrations
T3844 102-111 JJ denotes necessary
T3845 112-114 TO denotes to
T3846 115-122 VB denotes produce
T3847 123-124 DT denotes a
T3848 125-137 JJ denotes reproducible
T3849 138-141 CC denotes and
T3850 142-150 JJ denotes reliable
T3851 151-164 NN denotes up-regulation
T3852 165-168 CC denotes and
T3853 169-184 NN denotes down-regulation
T3854 185-187 IN denotes in
T3855 188-193 NN denotes TNF-α
T3856 194-204 NN denotes production
T3857 204-205 -COMMA- denotes ,
T3858 206-218 RB denotes respectively
T3859 218-219 -COMMA- denotes ,
T3860 220-222 IN denotes in
T3861 223-235 JJ denotes quantitative
T3862 236-242 NN denotes assays
T3863 243-244 -LRB- denotes (
T3864 244-248 NN denotes data
T3865 249-252 RB denotes not
T3866 253-258 VB denotes shown
T3867 258-259 -RRB- denotes )
R3163 T3825 T3826 arg1Of LPS,at
R3164 T3825 T3834 arg1Of LPS,at
R3165 T3825 T3840 arg1Of LPS,were
R3166 T3828 T3826 arg2Of concentration,at
R3167 T3828 T3827 arg1Of concentration,a
R3168 T3828 T3829 arg1Of concentration,of
R3169 T3831 T3832 arg1Of μg/mL,and
R3170 T3832 T3829 arg2Of and,of
R3171 T3832 T3830 arg1Of and,1
R3172 T3833 T3832 arg2Of PTX,and
R3173 T3836 T3834 arg2Of concentration,at
R3174 T3836 T3835 arg1Of concentration,a
R3175 T3836 T3837 arg1Of concentration,of
R3176 T3839 T3837 arg2Of mM,of
R3177 T3839 T3838 arg1Of mM,20
R3178 T3843 T3840 arg2Of concentrations,were
R3179 T3843 T3841 arg1Of concentrations,the
R3180 T3843 T3842 arg1Of concentrations,minimum
R3181 T3843 T3844 arg1Of concentrations,necessary
R3182 T3846 T3844 arg2Of produce,necessary
R3183 T3846 T3845 arg1Of produce,to
R3184 T3846 T3857 arg1Of produce,","
R3185 T3846 T3858 arg1Of produce,respectively
R3186 T3846 T3859 arg1Of produce,","
R3187 T3846 T3860 arg1Of produce,in
R3188 T3848 T3849 arg1Of reproducible,and
R3189 T3850 T3849 arg2Of reliable,and
R3190 T3851 T3852 arg1Of up-regulation,and
R3191 T3852 T3846 arg2Of and,produce
R3192 T3852 T3847 arg1Of and,a
R3193 T3852 T3848 arg1Of and,reproducible
R3194 T3852 T3850 arg1Of and,reliable
R3195 T3852 T3854 arg1Of and,in
R3196 T3853 T3852 arg2Of down-regulation,and
R3197 T3856 T3854 arg2Of production,in
R3198 T3856 T3855 arg1Of production,TNF-α
R3199 T3862 T3860 arg2Of assays,in
R3200 T3862 T3861 arg1Of assays,quantitative
R3201 T3862 T3863 arg1Of assays,(
R3202 T3864 T3863 arg2Of data,(
R3203 T3864 T3866 arg2Of data,shown
R3204 T3866 T3865 arg1Of shown,not
R3205 T3867 T3863 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3531 0-3 NNP denotes LPS
T3532 4-6 IN denotes at
T3533 7-8 DT denotes a
T3534 9-22 NN denotes concentration
T3535 23-25 IN denotes of
T3536 26-27 CD denotes 1
T3537 28-30 NN denotes μg
T3538 30-31 NN denotes /
T3539 31-33 NNP denotes mL
T3540 34-37 CC denotes and
T3541 38-41 NNP denotes PTX
T3542 42-44 IN denotes at
T3543 45-46 DT denotes a
T3544 47-60 NN denotes concentration
T3545 61-63 IN denotes of
T3546 64-66 CD denotes 20
T3547 67-69 NN denotes mM
T3548 70-74 VBD denotes were
T3549 75-78 DT denotes the
T3550 79-86 JJ denotes minimum
T3551 87-101 NNS denotes concentrations
T3552 102-111 JJ denotes necessary
T3553 112-114 TO denotes to
T3554 115-122 VB denotes produce
T3555 123-124 DT denotes a
T3556 125-137 JJ denotes reproducible
T3557 138-141 CC denotes and
T3558 142-150 JJ denotes reliable
T3559 151-164 NN denotes up-regulation
T3560 165-168 CC denotes and
T3561 169-184 NN denotes down-regulation
T3562 185-187 IN denotes in
T3563 188-193 JJ denotes TNF-α
T3564 194-204 NN denotes production
T3565 204-205 , denotes ,
T3566 206-218 RB denotes respectively
T3567 218-219 , denotes ,
T3568 220-222 IN denotes in
T3569 223-235 JJ denotes quantitative
T3570 236-242 NNS denotes assays
T3571 243-244 -LRB- denotes (
T3572 244-248 NNS denotes data
T3573 249-252 RB denotes not
T3574 253-258 VBN denotes shown
T3575 258-259 -RRB- denotes )
T3576 259-260 . denotes .
R2864 T3531 T3548 nsubj LPS,were
R2865 T3532 T3531 prep at,LPS
R2866 T3533 T3534 det a,concentration
R2867 T3534 T3532 pobj concentration,at
R2868 T3535 T3534 prep of,concentration
R2869 T3536 T3537 nummod 1,μg
R2870 T3537 T3539 compound μg,mL
R2871 T3538 T3539 compound /,mL
R2872 T3539 T3535 pobj mL,of
R2873 T3540 T3539 cc and,mL
R2874 T3541 T3539 conj PTX,mL
R2875 T3542 T3534 prep at,concentration
R2876 T3543 T3544 det a,concentration
R2877 T3544 T3542 pobj concentration,at
R2878 T3545 T3544 prep of,concentration
R2879 T3546 T3547 nummod 20,mM
R2880 T3547 T3545 pobj mM,of
R2881 T3548 T3548 ROOT were,were
R2882 T3549 T3551 det the,concentrations
R2883 T3550 T3551 amod minimum,concentrations
R2884 T3551 T3548 attr concentrations,were
R2885 T3552 T3551 amod necessary,concentrations
R2886 T3553 T3554 aux to,produce
R2887 T3554 T3552 xcomp produce,necessary
R2888 T3555 T3559 det a,up-regulation
R2889 T3556 T3559 amod reproducible,up-regulation
R2890 T3557 T3556 cc and,reproducible
R2891 T3558 T3556 conj reliable,reproducible
R2892 T3559 T3554 dobj up-regulation,produce
R2893 T3560 T3559 cc and,up-regulation
R2894 T3561 T3559 conj down-regulation,up-regulation
R2895 T3562 T3559 prep in,up-regulation
R2896 T3563 T3564 compound TNF-α,production
R2897 T3564 T3562 pobj production,in
R2898 T3565 T3559 punct ",",up-regulation
R2899 T3566 T3554 advmod respectively,produce
R2900 T3567 T3554 punct ",",produce
R2901 T3568 T3554 prep in,produce
R2902 T3569 T3570 amod quantitative,assays
R2903 T3570 T3568 pobj assays,in
R2904 T3571 T3574 punct (,shown
R2905 T3572 T3574 nsubjpass data,shown
R2906 T3573 T3574 neg not,shown
R2907 T3574 T3548 parataxis shown,were
R2908 T3575 T3574 punct ),shown
R2909 T3576 T3548 punct .,were

GO-BP

Id Subject Object Predicate Lexical cue
T3885 174-204 http://purl.obolibrary.org/obo/GO_0032680 denotes regulation in TNF-α production
T3887 188-204 http://purl.obolibrary.org/obo/GO_0032640 denotes TNF-α production
T3888 154-164 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T3889 174-184 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T3890 174-193 http://purl.obolibrary.org/obo/GO_0042534 denotes regulation in TNF-α
T3891 174-193 http://purl.obolibrary.org/obo/GO_1904467 denotes regulation in TNF-α
T3892 174-204 http://purl.obolibrary.org/obo/GO_0032720 denotes regulation in TNF-α production
T3893 174-204 http://purl.obolibrary.org/obo/GO_0032760 denotes regulation in TNF-α production

sentences

Id Subject Object Predicate Lexical cue
T3266 0-260 Sentence denotes LPS at a concentration of 1 μg/mL and PTX at a concentration of 20 mM were the minimum concentrations necessary to produce a reproducible and reliable up-regulation and down-regulation in TNF-α production, respectively, in quantitative assays (data not shown).
T63 0-260 Sentence denotes LPS at a concentration of 1 μg/mL and PTX at a concentration of 20 mM were the minimum concentrations necessary to produce a reproducible and reliable up-regulation and down-regulation in TNF-α production, respectively, in quantitative assays (data not shown).

events-check-again

Id Subject Object Predicate Lexical cue
T3944 151-164 Positive_regulation denotes up-regulation
T3945 169-184 Negative_regulation denotes down-regulation
T3946 188-193 Protein denotes TNF-α
T3947 194-204 Gene_expression denotes production
R3236 T3946 T3947 themeOf TNF-α,production
R3237 T3947 T3944 themeOf production,up-regulation
R3238 T3947 T3945 themeOf production,down-regulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T3913 38-41 Protein denotes PTX
T3914 188-193 Protein denotes TNF-α
T3915 194-204 Gene_expression denotes production
T3916 151-164 Positive_regulation denotes up-regulation
T3917 169-184 Negative_regulation denotes down-regulation
T3918 169-184 Negative_regulation denotes down-regulation
T3919 151-164 Positive_regulation denotes up-regulation
T3920 151-164 Positive_regulation denotes up-regulation
R3214 T3914 T3915 themeOf TNF-α,production
R3215 T3915 T3916 themeOf production,up-regulation
R3216 T3915 T3918 themeOf production,down-regulation
R3217 T3916 T3917 themeOf up-regulation,down-regulation
R3218 T3917 T3919 themeOf down-regulation,up-regulation
R3219 T3918 T3920 themeOf down-regulation,up-regulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3870 188-191 P01375 denotes TNF
T3871 188-193 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T3240 151-164 Positive_regulation denotes up-regulation
T3241 169-184 Negative_regulation denotes down-regulation
T3242 188-193 Protein denotes TNF-α
T3243 194-204 Gene_expression denotes production
R2592 T3242 T3243 themeOf TNF-α,production
R2593 T3243 T3241 themeOf production,down-regulation
R2594 T3243 T3240 themeOf production,up-regulation