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PMC:2664230 / 446-644 JSONTXT

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bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T64 137-143 Regulation denotes alters
T65 144-149 Protein denotes TNF-α
T66 150-160 Gene_expression denotes production
T67 161-179 Positive_regulation denotes in the presence of
R33 T64 T67 themeOf alters,in the presence of
R34 T65 T66 themeOf TNF-α,production
R35 T66 T64 themeOf production,alters

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T511 7-10 NN denotes LPS
T512 11-22 NN denotes stimulation
T513 23-25 VB denotes is
T514 26-29 CD denotes one
T515 30-32 IN denotes of
T516 33-36 DT denotes the
T517 37-40 JJ denotes key
T518 41-46 NN denotes steps
T519 47-49 IN denotes in
T520 50-59 JJ denotes bacterial
T521 60-66 NN denotes sepsis
T522 67-70 CC denotes and
T523 71-83 NN denotes inflammation
T524 85-88 DT denotes The
T525 89-98 NN denotes mechanism
T526 99-101 IN denotes by
T527 102-107 WDT denotes which
T528 108-125 NN denotes phosphodiesterase
T529 126-136 NN denotes inhibition
T530 137-143 VB denotes alters
T531 144-149 NN denotes TNF-α
T532 150-160 NN denotes production
T533 161-163 IN denotes in
T534 164-167 DT denotes the
T535 168-176 NN denotes presence
T536 177-179 IN denotes of
T537 180-183 NN denotes LPS
T538 184-191 VB denotes remains
R405 T512 T511 arg1Of stimulation,LPS
R406 T514 T513 arg2Of one,is
R407 T514 T515 arg1Of one,of
R408 T518 T515 arg2Of steps,of
R409 T518 T516 arg1Of steps,the
R410 T518 T517 arg1Of steps,key
R411 T518 T519 arg1Of steps,in
R412 T521 T522 arg1Of sepsis,and
R413 T522 T519 arg2Of and,in
R414 T522 T520 arg1Of and,bacterial
R415 T523 T522 arg2Of inflammation,and
R416 T525 T524 arg1Of mechanism,The
R417 T525 T526 arg2Of mechanism,by
R418 T525 T527 arg1Of mechanism,which
R419 T525 T538 arg1Of mechanism,remains
R421 T529 T528 arg1Of inhibition,phosphodiesterase
R422 T529 T530 arg1Of inhibition,alters
R423 T530 T526 arg1Of alters,by
R424 T530 T533 arg1Of alters,in
R425 T532 T530 arg2Of production,alters
R426 T532 T531 arg1Of production,TNF-α
R427 T535 T533 arg2Of presence,in
R428 T535 T534 arg1Of presence,the
R429 T535 T536 arg1Of presence,of
R430 T537 T536 arg2Of LPS,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T192 7-10 NNP denotes LPS
T193 11-22 NN denotes stimulation
T194 23-25 VBZ denotes is
T195 26-29 CD denotes one
T196 30-32 IN denotes of
T197 33-36 DT denotes the
T198 37-40 JJ denotes key
T199 41-46 NNS denotes steps
T200 47-49 IN denotes in
T201 50-59 JJ denotes bacterial
T202 60-66 NN denotes sepsis
T203 67-70 CC denotes and
T204 71-83 NN denotes inflammation
T205 83-84 . denotes .
T206 85-88 DT denotes The
T207 89-98 NN denotes mechanism
T208 99-101 IN denotes by
T209 102-107 WDT denotes which
T210 108-125 NN denotes phosphodiesterase
T211 126-136 NN denotes inhibition
T212 137-143 VBZ denotes alters
T213 144-149 JJ denotes TNF-α
T214 150-160 NN denotes production
T215 161-163 IN denotes in
T216 164-167 DT denotes the
T217 168-176 NN denotes presence
T218 177-179 IN denotes of
T219 180-183 NNP denotes LPS
T220 184-191 VBZ denotes remains
R90 T192 T193 compound LPS,stimulation
R92 T194 T194 ROOT is,is
R93 T195 T194 attr one,is
R94 T196 T195 prep of,one
R95 T197 T199 det the,steps
R96 T198 T199 amod key,steps
R97 T199 T196 pobj steps,of
R98 T200 T199 prep in,steps
R99 T201 T202 amod bacterial,sepsis
R103 T205 T194 punct .,is
R104 T206 T207 det The,mechanism
R105 T207 T220 nsubj mechanism,remains
R106 T208 T212 prep by,alters
R107 T209 T208 pobj which,by
R108 T210 T211 amod phosphodiesterase,inhibition
R109 T211 T212 nsubj inhibition,alters
R110 T212 T207 relcl alters,mechanism
R111 T213 T214 amod TNF-α,production
R112 T214 T212 dobj production,alters
R113 T215 T212 prep in,alters
R114 T216 T217 det the,presence
R115 T217 T215 pobj presence,in
R116 T218 T217 prep of,presence
R117 T219 T218 pobj LPS,of
R118 T220 T220 ROOT remains,remains
R100 T202 T200 pobj sepsis,in
R101 T203 T202 cc and,sepsis
R102 T204 T202 conj inflammation,sepsis

GO-BP

Id Subject Object Predicate Lexical cue
T828 144-160 http://purl.obolibrary.org/obo/GO_0032680 denotes TNF-α production
T839 108-125 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase
T856 71-83 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation

GO-MF

Id Subject Object Predicate Lexical cue
T866 108-125 http://purl.obolibrary.org/obo/GO_0008081 denotes phosphodiesterase

events-check-again

Id Subject Object Predicate Lexical cue
T894 137-143 Regulation denotes alters
T895 144-149 Protein denotes TNF-α
T896 150-160 Gene_expression denotes production
T897 161-179 Positive_regulation denotes in the presence of
R654 T894 T897 themeOf alters,in the presence of
R655 T895 T896 themeOf TNF-α,production
R656 T896 T894 themeOf production,alters

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T929 11-22 Positive_regulation denotes stimulation
T930 144-149 Protein denotes TNF-α
T931 150-160 Gene_expression denotes production
T932 137-143 Regulation denotes alters
R677 T930 T931 themeOf TNF-α,production
R678 T931 T932 themeOf production,alters

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T764 144-147 P01375 denotes TNF
T765 144-149 P01375 denotes TNF-α

test2

Id Subject Object Predicate Lexical cue
T38 137-143 Regulation denotes alters
T39 144-149 Protein denotes TNF-α
T40 150-160 Gene_expression denotes production
R23 T39 T40 themeOf TNF-α,production
R24 T40 T38 themeOf production,alters