PMC:2664230 / 271-445
Annnotations
bionlp-st-ge-2016-reference
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T58 | 23-50 | Protein | denotes | tumor necrosis factor-alpha |
| T59 | 52-57 | Protein | denotes | TNF-α |
| T60 | 59-69 | Gene_expression | denotes | production |
| T61 | 152-162 | Gene_expression | denotes | production |
| T62 | 166-171 | Protein | denotes | TNF-α |
| R750 | T58 | T60 | themeOf | tumor necrosis factor-alpha,production |
| R753 | T62 | T61 | themeOf | TNF-α,production |
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T486 | 1-7 | NN | denotes | factor |
| T487 | 8-18 | NN | denotes | activation |
| T488 | 19-22 | CC | denotes | and |
| T489 | 23-28 | NN | denotes | tumor |
| T490 | 29-37 | NN | denotes | necrosis |
| T491 | 38-50 | NN | denotes | factor-alpha |
| T492 | 51-52 | -LRB- | denotes | ( |
| T493 | 52-57 | NN | denotes | TNF-α |
| T494 | 57-58 | -RRB- | denotes | ) |
| T495 | 59-69 | NN | denotes | production |
| T496 | 70-72 | IN | denotes | in |
| T497 | 73-91 | NN | denotes | lipopolysaccharide |
| T498 | 92-93 | -LRB- | denotes | ( |
| T499 | 93-96 | NN | denotes | LPS |
| T500 | 96-97 | -RRB- | denotes | ) |
| T501 | 97-108 | JJ | denotes | -stimulated |
| T502 | 109-114 | JJ | denotes | human |
| T503 | 115-126 | JJ | denotes | mononuclear |
| T504 | 127-132 | NN | denotes | cells |
| T505 | 135-147 | NN | denotes | INTRODUCTION |
| T506 | 148-151 | DT | denotes | The |
| T507 | 152-162 | NN | denotes | production |
| T508 | 163-165 | IN | denotes | of |
| T509 | 166-171 | NN | denotes | TNF-α |
| R380 | T487 | T486 | arg1Of | activation,factor |
| R381 | T487 | T488 | arg1Of | activation,and |
| R383 | T488 | T496 | arg1Of | and,in |
| R384 | T491 | T489 | arg1Of | factor-alpha,tumor |
| R385 | T491 | T490 | arg1Of | factor-alpha,necrosis |
| R386 | T491 | T492 | arg1Of | factor-alpha,( |
| R387 | T493 | T492 | arg2Of | TNF-α,( |
| R388 | T494 | T492 | arg3Of | ),( |
| R389 | T495 | T488 | arg2Of | production,and |
| R390 | T495 | T491 | arg1Of | production,factor-alpha |
| R391 | T499 | T498 | arg2Of | LPS,( |
| R392 | T500 | T498 | arg3Of | ),( |
| R393 | T501 | T497 | arg1Of | -stimulated,lipopolysaccharide |
| R394 | T501 | T498 | arg1Of | -stimulated,( |
| R395 | T504 | T496 | arg2Of | cells,in |
| R396 | T504 | T501 | arg1Of | cells,-stimulated |
| R397 | T504 | T502 | arg1Of | cells,human |
| R398 | T504 | T503 | arg1Of | cells,mononuclear |
| R399 | T507 | T506 | arg1Of | production,The |
| R400 | T507 | T508 | arg1Of | production,of |
| R403 | T509 | T508 | arg2Of | TNF-α,of |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T165 | 1-7 | NN | denotes | factor |
| T166 | 8-18 | NN | denotes | activation |
| T167 | 19-22 | CC | denotes | and |
| T168 | 23-28 | NN | denotes | tumor |
| T169 | 29-37 | NN | denotes | necrosis |
| T170 | 38-50 | NN | denotes | factor-alpha |
| T171 | 51-52 | -LRB- | denotes | ( |
| T172 | 52-57 | NNP | denotes | TNF-α |
| T173 | 57-58 | -RRB- | denotes | ) |
| T174 | 59-69 | NN | denotes | production |
| T175 | 70-72 | IN | denotes | in |
| T176 | 73-91 | NN | denotes | lipopolysaccharide |
| T177 | 92-93 | -LRB- | denotes | ( |
| T178 | 93-96 | NNP | denotes | LPS |
| T179 | 96-97 | -RRB- | denotes | ) |
| T180 | 97-98 | : | denotes | - |
| T181 | 98-108 | VBN | denotes | stimulated |
| T182 | 109-114 | JJ | denotes | human |
| T183 | 115-126 | NN | denotes | mononuclear |
| T184 | 127-132 | NNS | denotes | cells |
| T185 | 132-133 | . | denotes | . |
| T186 | 135-147 | NNP | denotes | INTRODUCTION |
| T187 | 148-151 | DT | denotes | The |
| T188 | 152-162 | NN | denotes | production |
| T189 | 163-165 | IN | denotes | of |
| T190 | 166-171 | NNP | denotes | TNF-α |
| R80 | T182 | T184 | amod | human,cells |
| R81 | T183 | T184 | compound | mononuclear,cells |
| R82 | T184 | T181 | dobj | cells,stimulated |
| R85 | T187 | T188 | det | The,production |
| R87 | T189 | T188 | prep | of,production |
| R88 | T190 | T189 | pobj | TNF-α,of |
| R63 | T165 | T166 | compound | factor,activation |
| R65 | T167 | T166 | cc | and,activation |
| R66 | T168 | T169 | compound | tumor,necrosis |
| R67 | T169 | T170 | compound | necrosis,factor-alpha |
| R68 | T170 | T166 | conj | factor-alpha,activation |
| R69 | T171 | T172 | punct | (,TNF-α |
| R70 | T172 | T170 | appos | TNF-α,factor-alpha |
| R71 | T173 | T170 | punct | ),factor-alpha |
| R72 | T174 | T166 | conj | production,activation |
| R73 | T175 | T174 | prep | in,production |
| R74 | T176 | T175 | pobj | lipopolysaccharide,in |
| R75 | T177 | T178 | punct | (,LPS |
| R76 | T178 | T176 | appos | LPS,lipopolysaccharide |
| R77 | T179 | T176 | punct | ),lipopolysaccharide |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T826 | 52-69 | http://purl.obolibrary.org/obo/GO_0032680 | denotes | TNF-α) production |
| T827 | 152-171 | http://purl.obolibrary.org/obo/GO_0032680 | denotes | production of TNF-α |
| T834 | 52-69 | http://purl.obolibrary.org/obo/GO_0032640 | denotes | TNF-α) production |
| T835 | 152-171 | http://purl.obolibrary.org/obo/GO_0032640 | denotes | production of TNF-α |
| T836 | 152-169 | http://purl.obolibrary.org/obo/GO_0032640 | denotes | production of TNF |
| T852 | 29-37 | http://purl.obolibrary.org/obo/GO_0001906 | denotes | necrosis |
| T853 | 29-37 | http://purl.obolibrary.org/obo/GO_0008219 | denotes | necrosis |
| T854 | 29-37 | http://purl.obolibrary.org/obo/GO_0019835 | denotes | necrosis |
| T855 | 29-37 | http://purl.obolibrary.org/obo/GO_0070265 | denotes | necrosis |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T881 | 127-132 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T114 | 135-147 | Sentence | denotes | INTRODUCTION |
| T6 | 135-147 | Sentence | denotes | INTRODUCTION |
events-check-again
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T888 | 23-50 | Protein | denotes | tumor necrosis factor-alpha |
| T889 | 52-57 | Protein | denotes | TNF-α |
| T890 | 59-69 | Gene_expression | denotes | production |
| T891 | 152-162 | Gene_expression | denotes | production |
| T892 | 166-171 | Protein | denotes | TNF-α |
| R650 | T888 | T890 | themeOf | tumor necrosis factor-alpha,production |
| R653 | T892 | T891 | themeOf | TNF-α,production |
bionlp-st-ge-2016-reference-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T919 | 23-50 | Protein | denotes | tumor necrosis factor-alpha |
| T920 | 52-57 | Protein | denotes | TNF-α |
| T921 | 59-69 | Gene_expression | denotes | production |
| T922 | 59-69 | Gene_expression | denotes | production |
| T923 | 8-18 | Positive_regulation | denotes | activation |
| T924 | 8-18 | Positive_regulation | denotes | activation |
| T927 | 166-171 | Protein | denotes | TNF-α |
| T928 | 152-162 | Gene_expression | denotes | production |
| R669 | T919 | T921 | themeOf | tumor necrosis factor-alpha,production |
| R670 | T920 | T922 | themeOf | TNF-α,production |
| R671 | T921 | T923 | themeOf | production,activation |
| R672 | T922 | T924 | themeOf | production,activation |
| R675 | T927 | T928 | themeOf | TNF-α,production |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T759 | 23-44 | P01375 | denotes | tumor necrosis factor |
| T760 | 52-55 | P01375 | denotes | TNF |
| T761 | 52-57 | P01375 | denotes | TNF-α |
| T762 | 166-169 | P01375 | denotes | TNF |
| T763 | 166-171 | P01375 | denotes | TNF-α |
test2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T32 | 23-50 | Protein | denotes | tumor necrosis factor-alpha |
| T33 | 52-57 | Protein | denotes | TNF-α |
| T34 | 59-69 | Gene_expression | denotes | production |
| T35 | 152-162 | Gene_expression | denotes | production |
| T36 | 166-171 | Protein | denotes | TNF-α |
| R20 | T32 | T34 | themeOf | tumor necrosis factor-alpha,production |
| R22 | T36 | T35 | themeOf | TNF-α,production |